Ss1.1-Utr1-UTR010007D08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGTGTGAGGGGTTGCTGGTGGTGGCGCAGTCTGAGTAGGCACTATGAGTTTGGCTGGG GGCCGGGCCCCCCGGAAGACCGCAGGGAACCGGCTTTCTGGTCTCCTGGAGGCAGAGGAG GAAGATGAGTTCTACCAGACGACTTATGGGGGTTTCACTGAGGAATCAGGAGATGATGAG TATCAAGGGGACCAGTCAGACACAGAGGATGAGGTGGACTCTGATTTTGACATCGACGAA GGAGATGAACCATCCAGTGATGGAGAAACAGAAGAGCCAAGAAGGAAGCGCCGAGTAGTC ACCAAAGCGTATAAGGAGCCTCTTAAGAGCTTGAGGCCTCGAAAGGTCAGCACCCCAGCT GGTAGCTCTCAGAAGACCCGAGAAGAGAAAGCATTGCTTCCACTAGAACTACAGGATGAT GGCTCTGACAGTCGGAAGTCCATGCGTCAGTCTACAGCTGAGCATACAAGACAGACATTC CTTCGAGTACAAGAGCGGCAGGGTCAGTCACGGCGGCGAAAGGGGCCCCACTGTGAGCGG CCACTGACCCAGGAGGAGCTGCTCAGGGAGGCTAAGATCACAGAAGAGCTCAACTTACGT TCACTGGAGACCTATGAGCGGCTCGAGGCTGACAAAAAGAAGCAGGTCCATAAGAAGCGC AAGTGCCCTGGGCCCATAATCACCTACCATTCGGTGACAGTGCCACTTGTTGGGGAACCA GGCCCTAAAGAAGAGAATGTCGATGTGGAGGGACTTGATCCCACTCCCACGGCTTCTGCA TTGACTCCCCGTCCTGGGACTGGACCCGTCGTCCCTCCTGCTCGCTGCTCACGTACCTTC ATCACTTTCAGTGATGATGCGACGTTCGAGGAATGGTTCCCCCAAGGGCGGCCCCCAAAG GTCCCTGTTCGGGAGGTCTGCCCGGTGACCCATCGCCCAGCCCTATACCGGGACCCTGTT ACAGACATACCCTACGCCACTGCTCGAGCCTTCAAGATCATCCGTGAGGCCTACAAGAAG TACATCACTGCCCACGGACTGCCGCCCACTGCCTCAGCCCTGGGTCCTGGCCCACCACCC CCCGAGCCCCTCCCTGGCTCTGGGCCTCGAGCCTTGCGCCAGAAAATCGTCATCAAATGA AGGGAGGTCGAGTCCTTAGAAAGCCCTTTCCTGCCCTAACTTGGGGCTCTTGATGCCTGT TTCCCCCCACCACTTCTTCCCCTTGTCATCACTGATCCTTGCCCAGCCCTTTAGTTTTTT TCCCCTAGTTCCTATTGGTTTCATGGGTTGTTTTTTTTTTTTTTAATCTAATAAAATAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGTGTGAGGGGTTGCTGGTGGTGGCGCAGTCTGAGTAGGCACTATGAGTTTGGCTGGG GGCCGGGCCCCCCGGAAGACCGCAGGGAACCGGCTTTCTGGTCTCCTGGAGGCAGAGGAG GAAGATGAGTTCTACCAGACGACTTATGGGGGTTTCACTGAGGAATCAGGAGATGATGAG TATCAAGGGGACCAGTCAGACACAGAGGATGAGGTGGACTCTGATTTTGACATCGACGAA GGAGATGAACCATCCAGTGATGGAGAAACAGAAGAGCCAAGAAGGAAGCGCCGAGTAGTC ACCAAAGCGTATAAGGAGCCTCTTAAGAGCTTGAGGCCTCGAAAGGTCAGCACCCCAGCT GGTAGCTCTCAGAAGACCCGAGAAGAGAAAGCATTGCTTCCACTAGAACTACAGGATGAT GGCTCTGACAGTCGGAAGTCCATGCGTCAGTCTACAGCTGAGCATACAAGACAGACATTC CTTCGAGTACAAGAGCGGCAGGGTCAGTCACGGCGGCGAAAGGGGCCCCACTGTGAGCGG CCACTGACCCAGGAGGAGCTGCTCAGGGAGGCTAAGATCACAGAAGAGCTCAACTTACGT TCACTGGAGACCTATGAGCGGCTCGAGGCTGACAAAAAGAAGCAGGTCCATAAGAAGCGC AAGTGCCCTGGGCCCATAATCACCTACCATTCGGTGACAGTGCCACTTGTTGGGGAACCA GGCCCTAAAGAAGAGAATGTCGATGTGGAGGGACTTGATCCCACTCCCACGGCTTCTGCA TTGACTCCCCGTCCTGGGACTGGACCCGTCGTCCCTCCTGCTCGCTGCTCACGTACCTTC ATCACTTTCAGTGATGATGCGACGTTCGAGGAATGGTTCCCCCAAGGGCGGCCCCCAAAG GTCCCTGTTCGGGAGGTCTGCCCGGTGACCCATCGCCCAGCCCTATACCGGGACCCTGTT ACAGACATACCCTACGCCACTGCTCGAGCCTTCAAGATCATCCGTGAGGCCTACAAGAAG TACATCACTGCCCACGGACTGCCGCCCACTGCCTCAGCCCTGGGTCCTGGCCCACCACCC CCCGAGCCCCTCCCTGGCTCTGGGCCTCGAGCCTTGCGCCAGAAAATCGTCATCAAATGA AGGGAGGTCGAGTCCTTAGAAAGCCCTTTCCTGCCCTAACTTGGGGCTCTTGATGCCTGT TTCCCCCCACCACTTCTTCCCCTTGTCATCACTGATCCTTGCCCAGCCCTTTAGTTTTTT TCCCCTAGTTCCTATTGGTTTCATGGGTTGTTTTTTTTTTTTTTAATCTAATAAAATAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 819-938, - strand, RNAz p=0.852653 | |
| 1019-1138, - strand, RNAz p=0.576627 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 819-938, - strand, RNAz p=0.852653 | |
| 1019-1138, - strand, RNAz p=0.576627 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 158-319, gnl|bosTau2|chr3 (16377304-16377465) | |
| 158-319, gnl|Hg17|chr1 (147971504-147971343) | |
| 158-319, gnl|Mm7|chr3 (94992169-94992329) | |
| 431-607, gnl|bosTau2|chr3 (16378141-16378317) | |
| 431-607, gnl|canFam2|chr17 (63326041-63326274) | |
| 431-607, gnl|danRer3|chrNA (175279338-175279537) | |
| 431-607, gnl|dasNov1|scaffold_77723 (10679-10453) | |
| 431-607, gnl|echTel1|scaffold_323347 (38578-38809) | |
| 431-607, gnl|fr1|chrUn (290887496-290887707) | |
| 431-607, gnl|galGal2|chrUn (96972113-96972311) | |
| 431-607, gnl|hg17|chr1 (147969845-147970075) | |
| 431-607, gnl|Hg17|chr1 (147970042-147969866) | |
| 431-607, gnl|loxAfr1|scaffold_5758 (80471-80240) | |
| 431-607, gnl|mm7|chr3 (94993276-94993050) | |
| 431-607, gnl|Mm7|chr3 (94993080-94993256) | |
| 431-607, gnl|monDom2|scaffold_44 (4385019-4385236) | |
| 431-607, gnl|oryCun1|scaffold_34801 (971-742) | |
| 431-607, gnl|panTro1|chr1 (129706459-129706689) | |
| 431-607, gnl|rheMac2|chr1 (129610877-129611107) | |
| 431-607, gnl|rn3|chr2 (189982186-189981961) | |
| 431-607, gnl|tetNig1|chr21 (1749574-1749798) | |
| 431-607, gnl|xenTro1|scaffold_96 (1430765-1430576) | |
| 752-1320, gnl|bosTau2|chr3 (16393673-16394245) | |
| 752-1320, gnl|Hg17|chr1 (147962581-147962019) | |
| 752-1320, gnl|Mm7|chr3 (94996327-94996875) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-319, gnl|bosTau2|chr3 (16377304-16377465) | |
| 158-319, gnl|Hg17|chr1 (147971504-147971343) | |
| 158-319, gnl|Mm7|chr3 (94992169-94992329) | |
| 431-607, gnl|bosTau2|chr3 (16378141-16378317) | |
| 431-607, gnl|canFam2|chr17 (63326041-63326274) | |
| 431-607, gnl|danRer3|chrNA (175279338-175279537) | |
| 431-607, gnl|dasNov1|scaffold_77723 (10679-10453) | |
| 431-607, gnl|echTel1|scaffold_323347 (38578-38809) | |
| 431-607, gnl|fr1|chrUn (290887496-290887707) | |
| 431-607, gnl|galGal2|chrUn (96972113-96972311) | |
| 431-607, gnl|hg17|chr1 (147969845-147970075) | |
| 431-607, gnl|Hg17|chr1 (147970042-147969866) | |
| 431-607, gnl|loxAfr1|scaffold_5758 (80471-80240) | |
| 431-607, gnl|mm7|chr3 (94993276-94993050) | |
| 431-607, gnl|Mm7|chr3 (94993080-94993256) | |
| 431-607, gnl|monDom2|scaffold_44 (4385019-4385236) | |
| 431-607, gnl|oryCun1|scaffold_34801 (971-742) | |
| 431-607, gnl|panTro1|chr1 (129706459-129706689) | |
| 431-607, gnl|rheMac2|chr1 (129610877-129611107) | |
| 431-607, gnl|rn3|chr2 (189982186-189981961) | |
| 431-607, gnl|tetNig1|chr21 (1749574-1749798) | |
| 431-607, gnl|xenTro1|scaffold_96 (1430765-1430576) | |
| 752-1320, gnl|bosTau2|chr3 (16393673-16394245) | |
| 752-1320, gnl|Hg17|chr1 (147962581-147962019) | |
| 752-1320, gnl|Mm7|chr3 (94996327-94996875) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| ebs (0.354904) | |
| fty (0.351679) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.354904) | |
| fty (0.351679) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) | |
| ecc (0.115035) |