Non-Coding RNA Search

Ss1.1-Utr1-UTR010007E03.5

Sequence:


               
               TGGCGGCGACGGCCCCCAGTGCAGGGGTCTCTGCGCCTGAGGCGGCGGCTTCCACGGAAG
CCCCTCTGCAGTACAGCCTTCTTCTGCAGCACCTGGTGGGTGACAAGCGTCAGCCCCGGG
TCCTGGAGCCTGGGACCCTGGGCGGGATCCCGAGTCCCGCCAAGAGTGAGGAGCAGAAGA
TGATCGAGAGGGCGATGGAAAGCTGCGCCTTCAAGGCGGCGCTGGCCTGCGTGGGAGGAT
TTGTCTTGGGAGGTGCATTTGGGGTGTTCACTGCCGGCATCGATACCAATGTGGGCTTTG
ACCCGAAGGATCCTTACCGAACGCCGACGGCAAAAGAAGTTCTTAAAGACATGGGGCAGA
GAGGAATGTCCTATGCCAAAAACTTCGCCATTGTGGGCGCCATGTTTTCTTGCACTGAGT
GTTTGGTCGAATCTTACCGGGGAAAATCAGACTGGAAGAACAGTGTCATTAGTGGCTGCA
TCACTGGAGGAGCCATTGGTTTCAGAGCTGGCTTAAAGGCTGGGGTCATTGGTTGTGGAG
GTTTTGCTGCTTTCTCGGCTGCAATTGATTATTACCTACGGTGAGAGCATTTGCCTGCGG
GGAAGGACGATGCCAGCCCAGGATCAGAGCTGTTCTGAGGAGGGCACTTTCTGCCCCACT
CTGGGACCCTTGCTTCAGAAACTGAAGACACTCTTTTCCCTCGTAGAGTTGGTGTCGTGA
CAGAGCTGCCTGGCTGCGATCTGCCACCAGCCTGAGCAGCCAGCTCTCTGCTCCTGGACT
CCAGCCAGGCTGGGGGAGGGGGTGCCATGCCAGCTTCTTTCCCGCAGATCAGGAGTCAGC
GTGCCAACTGGTAGGGATTGAGTCCCACAAAGGTCCAGCCCTGACCATGCCTGGCCCTCT
GGTGCTGTGGGAACGGAGGGGATAGTGTGTACCTGCGAGGCTCTTCTACCTTGGAACTTC
CTGCCATCGTCCGTCTGCCACAGCAGGGCGGGGCAGAGCAAGTGTATGCCACCTGACCAG
TTATGTCCTTTTGTTTAGTGTTCCACTGTCCTTGTTTTAAAATATATCTGTTTATATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGGCGACGGCCCCCAGTGCAGGGGTCTCTGCGCCTGAGGCGGCGGCTTCCACGGAAG
CCCCTCTGCAGTACAGCCTTCTTCTGCAGCACCTGGTGGGTGACAAGCGTCAGCCCCGGG
TCCTGGAGCCTGGGACCCTGGGCGGGATCCCGAGTCCCGCCAAGAGTGAGGAGCAGAAGA
TGATCGAGAGGGCGATGGAAAGCTGCGCCTTCAAGGCGGCGCTGGCCTGCGTGGGAGGAT
TTGTCTTGGGAGGTGCATTTGGGGTGTTCACTGCCGGCATCGATACCAATGTGGGCTTTG
ACCCGAAGGATCCTTACCGAACGCCGACGGCAAAAGAAGTTCTTAAAGACATGGGGCAGA
GAGGAATGTCCTATGCCAAAAACTTCGCCATTGTGGGCGCCATGTTTTCTTGCACTGAGT
GTTTGGTCGAATCTTACCGGGGAAAATCAGACTGGAAGAACAGTGTCATTAGTGGCTGCA
TCACTGGAGGAGCCATTGGTTTCAGAGCTGGCTTAAAGGCTGGGGTCATTGGTTGTGGAG
GTTTTGCTGCTTTCTCGGCTGCAATTGATTATTACCTACGGTGAGAGCATTTGCCTGCGG
GGAAGGACGATGCCAGCCCAGGATCAGAGCTGTTCTGAGGAGGGCACTTTCTGCCCCACT
CTGGGACCCTTGCTTCAGAAACTGAAGACACTCTTTTCCCTCGTAGAGTTGGTGTCGTGA
CAGAGCTGCCTGGCTGCGATCTGCCACCAGCCTGAGCAGCCAGCTCTCTGCTCCTGGACT
CCAGCCAGGCTGGGGGAGGGGGTGCCATGCCAGCTTCTTTCCCGCAGATCAGGAGTCAGC
GTGCCAACTGGTAGGGATTGAGTCCCACAAAGGTCCAGCCCTGACCATGCCTGGCCCTCT
GGTGCTGTGGGAACGGAGGGGATAGTGTGTACCTGCGAGGCTCTTCTACCTTGGAACTTC
CTGCCATCGTCCGTCTGCCACAGCAGGGCGGGGCAGAGCAAGTGTATGCCACCTGACCAG
TTATGTCCTTTTGTTTAGTGTTCCACTGTCCTTGTTTTAAAATATATCTGTTTATATTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5BIN4_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BIN4_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-199, + strand, RNAz p=0.923721
               

               
               616-734, + strand, RNAz p=0.770203

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, + strand, RNAz p=0.923721
               

               
               616-734, + strand, RNAz p=0.770203

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_013337, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_013337, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-238, gnl|bosTau2|chr19 (16311007-16310770)
               

               
               1-238, gnl|canFam2|chr9 (48155059-48154789)
               

               
               1-238, gnl|danRer3|chr5 (68323531-68323792)
               

               
               1-238, gnl|dasNov1|scaffold_3288 (33174-32886)
               

               
               1-238, gnl|echTel1|scaffold_310506 (111486-111769)
               

               
               1-238, gnl|fr1|chrUn (293319549-293319824)
               

               
               1-238, gnl|galGal2|chr19 (5919003-5918755)
               

               
               1-238, gnl|hg17|chr17 (847116-847388)
               

               
               1-238, gnl|Hg17|chr17 (847134-847371)
               

               
               1-238, gnl|loxAfr1|scaffold_101361 (8690-8962)
               

               
               1-238, gnl|mm7|chr11 (76488762-76489035)
               

               
               1-238, gnl|Mm7|chr11 (76488780-76489017)
               

               
               1-238, gnl|monDom2|scaffold_86 (1486182-1485910)
               

               
               1-238, gnl|oryCun1|scaffold_186026 (1303-1579)
               

               
               1-238, gnl|panTro1|chr19 (976204-976477)
               

               
               1-238, gnl|rn3|chr10 (67783649-67783382)
               

               
               1-238, gnl|tetNig1|chr7 (2223477-2223710)
               

               
               1-238, gnl|xenTro1|scaffold_50 (1168086-1167792)
               


               
               496-881, gnl|bosTau2|chr19 (16306011-16305623)
               

               
               496-881, gnl|Hg17|chr17 (850991-851381)
               

               
               496-881, gnl|Mm7|chr11 (76495609-76495999)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-238, gnl|bosTau2|chr19 (16311007-16310770)
               

               
               1-238, gnl|canFam2|chr9 (48155059-48154789)
               

               
               1-238, gnl|danRer3|chr5 (68323531-68323792)
               

               
               1-238, gnl|dasNov1|scaffold_3288 (33174-32886)
               

               
               1-238, gnl|echTel1|scaffold_310506 (111486-111769)
               

               
               1-238, gnl|fr1|chrUn (293319549-293319824)
               

               
               1-238, gnl|galGal2|chr19 (5919003-5918755)
               

               
               1-238, gnl|hg17|chr17 (847116-847388)
               

               
               1-238, gnl|Hg17|chr17 (847134-847371)
               

               
               1-238, gnl|loxAfr1|scaffold_101361 (8690-8962)
               

               
               1-238, gnl|mm7|chr11 (76488762-76489035)
               

               
               1-238, gnl|Mm7|chr11 (76488780-76489017)
               

               
               1-238, gnl|monDom2|scaffold_86 (1486182-1485910)
               

               
               1-238, gnl|oryCun1|scaffold_186026 (1303-1579)
               

               
               1-238, gnl|panTro1|chr19 (976204-976477)
               

               
               1-238, gnl|rn3|chr10 (67783649-67783382)
               

               
               1-238, gnl|tetNig1|chr7 (2223477-2223710)
               

               
               1-238, gnl|xenTro1|scaffold_50 (1168086-1167792)
               


               
               496-881, gnl|bosTau2|chr19 (16306011-16305623)
               

               
               496-881, gnl|Hg17|chr17 (850991-851381)
               

               
               496-881, gnl|Mm7|chr11 (76495609-76495999)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               eep (0.367692)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.367692)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)

	40-199, + strand, RNAz p=0.923721
	616-734, + strand, RNAz p=0.770203

	1-238, gnl\|bosTau2\|chr19 (16311007-16310770)
	1-238, gnl\|canFam2\|chr9 (48155059-48154789)
	1-238, gnl\|danRer3\|chr5 (68323531-68323792)
	1-238, gnl\|dasNov1\|scaffold_3288 (33174-32886)
	1-238, gnl\|echTel1\|scaffold_310506 (111486-111769)
	1-238, gnl\|fr1\|chrUn (293319549-293319824)
	1-238, gnl\|galGal2\|chr19 (5919003-5918755)
	1-238, gnl\|hg17\|chr17 (847116-847388)
	1-238, gnl\|Hg17\|chr17 (847134-847371)
	1-238, gnl\|loxAfr1\|scaffold_101361 (8690-8962)
	1-238, gnl\|mm7\|chr11 (76488762-76489035)
	1-238, gnl\|Mm7\|chr11 (76488780-76489017)
	1-238, gnl\|monDom2\|scaffold_86 (1486182-1485910)
	1-238, gnl\|oryCun1\|scaffold_186026 (1303-1579)
	1-238, gnl\|panTro1\|chr19 (976204-976477)
	1-238, gnl\|rn3\|chr10 (67783649-67783382)
	1-238, gnl\|tetNig1\|chr7 (2223477-2223710)
	1-238, gnl\|xenTro1\|scaffold_50 (1168086-1167792)

	496-881, gnl\|bosTau2\|chr19 (16306011-16305623)
	496-881, gnl\|Hg17\|chr17 (850991-851381)
	496-881, gnl\|Mm7\|chr11 (76495609-76495999)

	eep (0.367692)
	tes (0.207814)
	hea (0.204499)
	ldo (0.194005)
	fbs (0.175346)
	fhi (0.169578)
	eli (0.151814)
	liv (0.146284)
	hlv (0.139256)
	ssp (0.13552)
	ute (0.132784)