Ss1.1-Utr1-UTR010008A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGCTGGATCGGCCTTTTGAAGATTTCATTGACAGGGAGACCACACCCCGGATGCCAT GGCGGGACGTCGGGGTGGTAGTCCATGGTCCACCTGCCAGGGACCTTGCCCGGCACTTTA TCCAGCGCTGGAATTTCACCAAGACTACAAAGGCCAAGTACAAGACACCCATGTACCCCT ACCTGCTGCCCAAGTCTATCAGCACCGCAAACCAGCTCCCCTTCGTGCTGCCGGGAGGGC AGTGCGCCACCGTGCAGGTCTTGCGGTCGGTGGACCGCTGGTCAGCGGGGACTTTGGAGG CCTCTATCCTCAATGGCTACCTGCACACCATCAGGGAGAGCCAGCACTTCCTCTACATTG AGAATCAGTTCTTCATTAGCTGCTCAGATGGGCGGACGGTTCTGAACAAGGTGGGCGATG AGATTGTGGACCGAATCCTAAAGGCGCACAAGCAGGGGCAGTGCTTCCGCGTCTACGTGC TTTTGCCCCTGCTCCCAGGGTTTGAGGGCGACATCTCCACAGGTGGTGGTAACTCCATCC AGGCCATTCTGCACTTTACCTACAGGACCCTGTGTCGTGGGGAGTATTCAGTCCTTCATC GCCTCAAAGCAGCTATGGGGACAGCATGGCGAGACTATATTTCCATCTGTGGGCTTCGCA CACATGGAGAGCTGGGCGGGCACCCAGTCTCAGAGCTCATCTATATCCACAGCAAGATGC TCATTGCGGATGACCGGAGAGTCATCATTGGCTCAGCAAACATCAATGACCGGAGCTTGC TGGGGAAGAGAGACAGTGAGCTGGCCGTGCTGATCGAGGACACGGAGATGGAGCCATCTC TCATGGACGGAGCGGAATATCAGGCGGGCAGGTTTGCCTTGAGTTTGCGGAAGCACTGCT TCAGCGCGATTCTGGGGGCAGATGCCCGACCGGACCTGGATCTCCGAGACCCTGTCTGTG ATGACTTCTTCCAGCTGTGGCAAGACATAGCCGAGAGCAATGCCAATATCTATGAGCAGA TCTTCCGCTGCCTGCCATCCAACGCCACACGCTCCCTGCGGGCGCTCCGGGAGTACGTGG CCGTGGAGCCCCTGGCCACGGTCAGCCCTCCCTTGGCCCGGTCTGAACTCACCCAGGTCC AGGGCCACCTGGTCCACTTCCCGCTCAAGTTCTTGGAGGAGGAGTCTCTGCTGCCCCCCC GGGGGAGCAAGGAGGGCATGATCCCTTTAGAAGTGTGGACATAGCCACGGCTCTGGCCTG GGAGAAGCCACCAGTCCCTGGGCTCCATGGCATCTGGCTCCCTGCCCCCTGCCCCTCAGG ACCGAGGGCAGTGCTTTTGAGACCTGGGGGAGGCAGGTCCCTGGGGGGGACTAGAGATGT CGCAGAGGACCCTTTTCGAGAGGCAGCCAAAGAGGAGACTCCCACCCCCCGGGCTGGGGA GGCAGAAGAGGGTCCCGGAGAAGTTCACTCTCCTCGATGGATGCCCAGTTCGAACCACTG CTGCAAAGGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGCTGGATCGGCCTTTTGAAGATTTCATTGACAGGGAGACCACACCCCGGATGCCAT GGCGGGACGTCGGGGTGGTAGTCCATGGTCCACCTGCCAGGGACCTTGCCCGGCACTTTA TCCAGCGCTGGAATTTCACCAAGACTACAAAGGCCAAGTACAAGACACCCATGTACCCCT ACCTGCTGCCCAAGTCTATCAGCACCGCAAACCAGCTCCCCTTCGTGCTGCCGGGAGGGC AGTGCGCCACCGTGCAGGTCTTGCGGTCGGTGGACCGCTGGTCAGCGGGGACTTTGGAGG CCTCTATCCTCAATGGCTACCTGCACACCATCAGGGAGAGCCAGCACTTCCTCTACATTG AGAATCAGTTCTTCATTAGCTGCTCAGATGGGCGGACGGTTCTGAACAAGGTGGGCGATG AGATTGTGGACCGAATCCTAAAGGCGCACAAGCAGGGGCAGTGCTTCCGCGTCTACGTGC TTTTGCCCCTGCTCCCAGGGTTTGAGGGCGACATCTCCACAGGTGGTGGTAACTCCATCC AGGCCATTCTGCACTTTACCTACAGGACCCTGTGTCGTGGGGAGTATTCAGTCCTTCATC GCCTCAAAGCAGCTATGGGGACAGCATGGCGAGACTATATTTCCATCTGTGGGCTTCGCA CACATGGAGAGCTGGGCGGGCACCCAGTCTCAGAGCTCATCTATATCCACAGCAAGATGC TCATTGCGGATGACCGGAGAGTCATCATTGGCTCAGCAAACATCAATGACCGGAGCTTGC TGGGGAAGAGAGACAGTGAGCTGGCCGTGCTGATCGAGGACACGGAGATGGAGCCATCTC TCATGGACGGAGCGGAATATCAGGCGGGCAGGTTTGCCTTGAGTTTGCGGAAGCACTGCT TCAGCGCGATTCTGGGGGCAGATGCCCGACCGGACCTGGATCTCCGAGACCCTGTCTGTG ATGACTTCTTCCAGCTGTGGCAAGACATAGCCGAGAGCAATGCCAATATCTATGAGCAGA TCTTCCGCTGCCTGCCATCCAACGCCACACGCTCCCTGCGGGCGCTCCGGGAGTACGTGG CCGTGGAGCCCCTGGCCACGGTCAGCCCTCCCTTGGCCCGGTCTGAACTCACCCAGGTCC AGGGCCACCTGGTCCACTTCCCGCTCAAGTTCTTGGAGGAGGAGTCTCTGCTGCCCCCCC GGGGGAGCAAGGAGGGCATGATCCCTTTAGAAGTGTGGACATAGCCACGGCTCTGGCCTG GGAGAAGCCACCAGTCCCTGGGCTCCATGGCATCTGGCTCCCTGCCCCCTGCCCCTCAGG ACCGAGGGCAGTGCTTTTGAGACCTGGGGGAGGCAGGTCCCTGGGGGGGACTAGAGATGT CGCAGAGGACCCTTTTCGAGAGGCAGCCAAAGAGGAGACTCCCACCCCCCGGGCTGGGGA GGCAGAAGAGGGTCCCGGAGAAGTTCACTCTCCTCGATGGATGCCCAGTTCGAACCACTG CTGCAAAGGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 785-1512, + strand, RNAz p=0.997538 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 785-1512, + strand, RNAz p=0.997538 |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 23-143, gnl|bosTau2|chr19 (14739858-14739978) | |
| 23-143, gnl|canFam2|chr5 (34755589-34755449) | |
| 23-143, gnl|danRer3|chr5 (38197393-38197521) | |
| 23-143, gnl|dasNov1|scaffold_154285 (1314-1454) | |
| 23-143, gnl|echTel1|scaffold_305153 (4255-4115) | |
| 23-143, gnl|fr1|chrUn (49562556-49562429) | |
| 23-143, gnl|hg17|chr17 (4667192-4667332) | |
| 23-143, gnl|Hg17|chr17 (4667196-4667316) | |
| 23-143, gnl|loxAfr1|scaffold_9798 (1167-1307) | |
| 23-143, gnl|mm7|chr11 (70635614-70635752) | |
| 23-143, gnl|Mm7|chr11 (70635616-70635736) | |
| 23-143, gnl|monDom2|scaffold_66 (3563558-3563423) | |
| 23-143, gnl|oryCun1|scaffold_184997 (14214-14361) | |
| 23-143, gnl|panTro1|chr19 (4970443-4970583) | |
| 23-143, gnl|rheMac2|chr16 (4606262-4606402) | |
| 23-143, gnl|rn3|chr10 (57447467-57447606) | |
| 23-143, gnl|tetNig1|chr7 (5068043-5067916) | |
| 23-143, gnl|xenTro1|scaffold_499 (232275-232135) | |
| 253-362, gnl|bosTau2|chr19 (14740302-14740411) | |
| 253-362, gnl|canFam2|chr5 (34755159-34755037) | |
| 253-362, gnl|danRer3|chr5 (38197820-38197933) | |
| 253-362, gnl|dasNov1|scaffold_154285 (1771-1894) | |
| 253-362, gnl|fr1|chrUn (49560319-49560203) | |
| 253-362, gnl|hg17|chr17 (4668255-4668376) | |
| 253-362, gnl|Hg17|chr17 (4668259-4668367) | |
| 253-362, gnl|loxAfr1|scaffold_9798 (1630-1753) | |
| 253-362, gnl|mm7|chr11 (70636145-70636266) | |
| 253-362, gnl|Mm7|chr11 (70636149-70636257) | |
| 253-362, gnl|monDom2|scaffold_66 (3563149-3563035) | |
| 253-362, gnl|panTro1|chr19 (4983528-4983649) | |
| 253-362, gnl|rheMac2|chr16 (4607043-4607164) | |
| 253-362, gnl|rn3|chr10 (57447931-57448052) | |
| 253-362, gnl|tetNig1|chr7 (5066242-5066130) | |
| 253-362, gnl|xenTro1|scaffold_499 (230273-230138) | |
| 453-566, gnl|bosTau2|chr19 (14740829-14740942) | |
| 453-566, gnl|canFam2|chr34 (38958304-38958186) | |
| 453-566, gnl|danRer3|chr5 (38198853-38198970) | |
| 453-566, gnl|echTel1|scaffold_305153 (3047-2929) | |
| 453-566, gnl|fr1|chrUn (49559802-49559683) | |
| 453-566, gnl|hg17|chr17 (4668754-4668874) | |
| 453-566, gnl|Hg17|chr17 (4668756-4668869) | |
| 453-566, gnl|mm7|chr11 (70636624-70636744) | |
| 453-566, gnl|Mm7|chr11 (70636626-70636739) | |
| 453-566, gnl|monDom2|scaffold_66 (3562675-3562557) | |
| 453-566, gnl|panTro1|chr19 (4984027-4984147) | |
| 453-566, gnl|rheMac2|chr16 (4607554-4607674) | |
| 453-566, gnl|rn3|chr10 (57448427-57448547) | |
| 453-566, gnl|tetNig1|chr7 (5065661-5065542) | |
| 453-566, gnl|xenTro1|scaffold_499 (228691-228542) | |
| 750-904, gnl|bosTau2|chr19 (14741797-14741952) | |
| 750-904, gnl|canFam2|chr34 (38936589-38936425) | |
| 750-904, gnl|danRer3|chr5 (38203056-38203226) | |
| 750-904, gnl|dasNov1|scaffold_40940 (8846-8689) | |
| 750-904, gnl|echTel1|scaffold_295393 (14863-15028) | |
| 750-904, gnl|fr1|chrUn (49558787-49558611) | |
| 750-904, gnl|hg17|chr17 (4669670-4669855) | |
| 750-904, gnl|Hg17|chr17 (4669689-4669843) | |
| 750-904, gnl|loxAfr1|scaffold_36324 (4630-4473) | |
| 750-904, gnl|mm7|chr11 (70637466-70637645) | |
| 750-904, gnl|Mm7|chr11 (70637481-70637635) | |
| 750-904, gnl|monDom2|scaffold_66 (3560722-3560549) | |
| 750-904, gnl|oryCun1|scaffold_101159 (2922-3114) | |
| 750-904, gnl|panTro1|chr19 (4984942-4985127) | |
| 750-904, gnl|rheMac2|chr16 (4608478-4608663) | |
| 750-904, gnl|rn3|chr10 (57449265-57449444) | |
| 750-904, gnl|tetNig1|chr7 (5064528-5064352) | |
| 750-904, gnl|xenTro1|scaffold_499 (226601-226441) | |
| 1289-1512, gnl|bosTau2|chr19 (14742684-14742905) | |
| 1289-1512, gnl|canFam2|chr5 (34752715-34752574) | |
| 1289-1512, gnl|dasNov1|scaffold_154285 (4394-4532) | |
| 1289-1512, gnl|echTel1|scaffold_305153 (621-477) | |
| 1289-1512, gnl|hg17|chr17 (4673230-4673367) | |
| 1289-1512, gnl|loxAfr1|scaffold_9798 (4409-4547) | |
| 1289-1512, gnl|mm7|chr11 (70639240-70639376) | |
| 1289-1512, gnl|monDom2|scaffold_66 (3559854-3559669) | |
| 1289-1512, gnl|oryCun1|scaffold_192382 (3706-3840) | |
| 1289-1512, gnl|panTro1|chr19 (4988579-4988715) | |
| 1289-1512, gnl|rheMac2|chr16 (4612400-4612541) | |
| 1289-1512, gnl|rn3|chr10 (57451371-57451507) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 23-143, gnl|bosTau2|chr19 (14739858-14739978) | |
| 23-143, gnl|canFam2|chr5 (34755589-34755449) | |
| 23-143, gnl|danRer3|chr5 (38197393-38197521) | |
| 23-143, gnl|dasNov1|scaffold_154285 (1314-1454) | |
| 23-143, gnl|echTel1|scaffold_305153 (4255-4115) | |
| 23-143, gnl|fr1|chrUn (49562556-49562429) | |
| 23-143, gnl|hg17|chr17 (4667192-4667332) | |
| 23-143, gnl|Hg17|chr17 (4667196-4667316) | |
| 23-143, gnl|loxAfr1|scaffold_9798 (1167-1307) | |
| 23-143, gnl|mm7|chr11 (70635614-70635752) | |
| 23-143, gnl|Mm7|chr11 (70635616-70635736) | |
| 23-143, gnl|monDom2|scaffold_66 (3563558-3563423) | |
| 23-143, gnl|oryCun1|scaffold_184997 (14214-14361) | |
| 23-143, gnl|panTro1|chr19 (4970443-4970583) | |
| 23-143, gnl|rheMac2|chr16 (4606262-4606402) | |
| 23-143, gnl|rn3|chr10 (57447467-57447606) | |
| 23-143, gnl|tetNig1|chr7 (5068043-5067916) | |
| 23-143, gnl|xenTro1|scaffold_499 (232275-232135) | |
| 253-362, gnl|bosTau2|chr19 (14740302-14740411) | |
| 253-362, gnl|canFam2|chr5 (34755159-34755037) | |
| 253-362, gnl|danRer3|chr5 (38197820-38197933) | |
| 253-362, gnl|dasNov1|scaffold_154285 (1771-1894) | |
| 253-362, gnl|fr1|chrUn (49560319-49560203) | |
| 253-362, gnl|hg17|chr17 (4668255-4668376) | |
| 253-362, gnl|Hg17|chr17 (4668259-4668367) | |
| 253-362, gnl|loxAfr1|scaffold_9798 (1630-1753) | |
| 253-362, gnl|mm7|chr11 (70636145-70636266) | |
| 253-362, gnl|Mm7|chr11 (70636149-70636257) | |
| 253-362, gnl|monDom2|scaffold_66 (3563149-3563035) | |
| 253-362, gnl|panTro1|chr19 (4983528-4983649) | |
| 253-362, gnl|rheMac2|chr16 (4607043-4607164) | |
| 253-362, gnl|rn3|chr10 (57447931-57448052) | |
| 253-362, gnl|tetNig1|chr7 (5066242-5066130) | |
| 253-362, gnl|xenTro1|scaffold_499 (230273-230138) | |
| 453-566, gnl|bosTau2|chr19 (14740829-14740942) | |
| 453-566, gnl|canFam2|chr34 (38958304-38958186) | |
| 453-566, gnl|danRer3|chr5 (38198853-38198970) | |
| 453-566, gnl|echTel1|scaffold_305153 (3047-2929) | |
| 453-566, gnl|fr1|chrUn (49559802-49559683) | |
| 453-566, gnl|hg17|chr17 (4668754-4668874) | |
| 453-566, gnl|Hg17|chr17 (4668756-4668869) | |
| 453-566, gnl|mm7|chr11 (70636624-70636744) | |
| 453-566, gnl|Mm7|chr11 (70636626-70636739) | |
| 453-566, gnl|monDom2|scaffold_66 (3562675-3562557) | |
| 453-566, gnl|panTro1|chr19 (4984027-4984147) | |
| 453-566, gnl|rheMac2|chr16 (4607554-4607674) | |
| 453-566, gnl|rn3|chr10 (57448427-57448547) | |
| 453-566, gnl|tetNig1|chr7 (5065661-5065542) | |
| 453-566, gnl|xenTro1|scaffold_499 (228691-228542) | |
| 750-904, gnl|bosTau2|chr19 (14741797-14741952) | |
| 750-904, gnl|canFam2|chr34 (38936589-38936425) | |
| 750-904, gnl|danRer3|chr5 (38203056-38203226) | |
| 750-904, gnl|dasNov1|scaffold_40940 (8846-8689) | |
| 750-904, gnl|echTel1|scaffold_295393 (14863-15028) | |
| 750-904, gnl|fr1|chrUn (49558787-49558611) | |
| 750-904, gnl|hg17|chr17 (4669670-4669855) | |
| 750-904, gnl|Hg17|chr17 (4669689-4669843) | |
| 750-904, gnl|loxAfr1|scaffold_36324 (4630-4473) | |
| 750-904, gnl|mm7|chr11 (70637466-70637645) | |
| 750-904, gnl|Mm7|chr11 (70637481-70637635) | |
| 750-904, gnl|monDom2|scaffold_66 (3560722-3560549) | |
| 750-904, gnl|oryCun1|scaffold_101159 (2922-3114) | |
| 750-904, gnl|panTro1|chr19 (4984942-4985127) | |
| 750-904, gnl|rheMac2|chr16 (4608478-4608663) | |
| 750-904, gnl|rn3|chr10 (57449265-57449444) | |
| 750-904, gnl|tetNig1|chr7 (5064528-5064352) | |
| 750-904, gnl|xenTro1|scaffold_499 (226601-226441) | |
| 1289-1512, gnl|bosTau2|chr19 (14742684-14742905) | |
| 1289-1512, gnl|canFam2|chr5 (34752715-34752574) | |
| 1289-1512, gnl|dasNov1|scaffold_154285 (4394-4532) | |
| 1289-1512, gnl|echTel1|scaffold_305153 (621-477) | |
| 1289-1512, gnl|hg17|chr17 (4673230-4673367) | |
| 1289-1512, gnl|loxAfr1|scaffold_9798 (4409-4547) | |
| 1289-1512, gnl|mm7|chr11 (70639240-70639376) | |
| 1289-1512, gnl|monDom2|scaffold_66 (3559854-3559669) | |
| 1289-1512, gnl|oryCun1|scaffold_192382 (3706-3840) | |
| 1289-1512, gnl|panTro1|chr19 (4988579-4988715) | |
| 1289-1512, gnl|rheMac2|chr16 (4612400-4612541) | |
| 1289-1512, gnl|rn3|chr10 (57451371-57451507) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nep (0.36785) | |
| ese (0.126502) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| ese (0.126502) | |
| eep (0.122564) | |
| jca (0.11396) |