Ss1.1-Utr1-UTR010008C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGAAGAAAACTGGAAAAATCTGGGCAGGGAAATTCTTCAAGGCGTATTCAGCAAAAGA GAAAGAGAACATCCGGCAGGAGATCAGCATCATGAACTGCCTCCACCACCCCAAGCTGGT CCAGTGTGTGGACGCCTTCGAAGAGAAGGCCAACATCGTCATGGTCCTGGAGATCGTGTC CGGGGGCGAGCTGTTCGAGCGCATCATTGACGAGGACTTTGAGCTGACGGAGCGCGAGTG CATCAAGTACATGCGGCAGATCTCGGAGGGGGTGGAGTACATCCACAAGCAGGGCATCGT CCACCTGGACCTCAAGCCTGAGAACATCATGTGTGTCAACAAGACGGGCACCCGGATCAA GCTCATCGACTTCGGTCTGGCCCGGCGGCTGGAGAATGCGGGGTCTCTGAAGGTCCTCTT TGGCACCCCGGAGTTTGTGGCGCCTGAAGTGATCAACTATGAGCCCATTGGCTATGCCAC GGACATGTGGAGCATCGGGGTCATCTGCTACATCCTGGTCAGTGGACTGTCCCCCTTTAT GGGTGACAACGATAACGAGACCTTAGCCAACGTTACCTCAGCCACCTGGGACTTCGACGA TGAGGCCTTCGATGAGATCTCCGACGACGCCAAGGATTTCATCAGCAATTTACTGAAGAA AGATATGAAAAACCGCTTGGACTGCACCCAGTGCCTCCAGCACCCATGGCTAATGAAAGA TACCAAGAACATGGAGGCCAAGAAGCTCTCCAAGGACCGGATGAAAAAGTACATGGCAAG GAGGAAATGGCAGAAAACGGGCAATGCTGTGAGAGCCATTGGAAGACTGTCCTCTATGGC AATGATCTCAGGGCTCAGTGGCAGGAAATCCTCAACAGGGTCACCAACCAGCCCGCTGAA TGCAGAAAAATTAGAATCTGAAGAAGATGTCTCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGAAGAAAACTGGAAAAATCTGGGCAGGGAAATTCTTCAAGGCGTATTCAGCAAAAGA GAAAGAGAACATCCGGCAGGAGATCAGCATCATGAACTGCCTCCACCACCCCAAGCTGGT CCAGTGTGTGGACGCCTTCGAAGAGAAGGCCAACATCGTCATGGTCCTGGAGATCGTGTC CGGGGGCGAGCTGTTCGAGCGCATCATTGACGAGGACTTTGAGCTGACGGAGCGCGAGTG CATCAAGTACATGCGGCAGATCTCGGAGGGGGTGGAGTACATCCACAAGCAGGGCATCGT CCACCTGGACCTCAAGCCTGAGAACATCATGTGTGTCAACAAGACGGGCACCCGGATCAA GCTCATCGACTTCGGTCTGGCCCGGCGGCTGGAGAATGCGGGGTCTCTGAAGGTCCTCTT TGGCACCCCGGAGTTTGTGGCGCCTGAAGTGATCAACTATGAGCCCATTGGCTATGCCAC GGACATGTGGAGCATCGGGGTCATCTGCTACATCCTGGTCAGTGGACTGTCCCCCTTTAT GGGTGACAACGATAACGAGACCTTAGCCAACGTTACCTCAGCCACCTGGGACTTCGACGA TGAGGCCTTCGATGAGATCTCCGACGACGCCAAGGATTTCATCAGCAATTTACTGAAGAA AGATATGAAAAACCGCTTGGACTGCACCCAGTGCCTCCAGCACCCATGGCTAATGAAAGA TACCAAGAACATGGAGGCCAAGAAGCTCTCCAAGGACCGGATGAAAAAGTACATGGCAAG GAGGAAATGGCAGAAAACGGGCAATGCTGTGAGAGCCATTGGAAGACTGTCCTCTATGGC AATGATCTCAGGGCTCAGTGGCAGGAAATCCTCAACAGGGTCACCAACCAGCCCGCTGAA TGCAGAAAAATTAGAATCTGAAGAAGATGTCTCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 791-909, - strand, RNAz p=0.927204 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 791-909, - strand, RNAz p=0.927204 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 106-550, gnl|bosTau2|chr18 (14958801-14958351) | |
| 106-550, gnl|canFam2|chr5 (84591200-84591612) | |
| 106-550, gnl|danRer3|chr18 (20979689-20979277) | |
| 106-550, gnl|dasNov1|scaffold_3445 (88511-88925) | |
| 106-550, gnl|echTel1|scaffold_166784 (469-881) | |
| 106-550, gnl|fr1|chrUn (168727634-168728046) | |
| 106-550, gnl|galGal2|chr11 (937800-937388) | |
| 106-550, gnl|Hg17|chr16 (66500606-66501056) | |
| 106-550, gnl|hg17|chr5 (54688244-54688664) | |
| 106-550, gnl|loxAfr1|scaffold_972 (12163-12575) | |
| 106-550, gnl|mm7|chr8 (104512449-104512037) | |
| 106-550, gnl|Mm7|chr8 (104511997-104512447) | |
| 106-550, gnl|monDom2|scaffold_11 (60323672-60323262) | |
| 106-550, gnl|oryCun1|scaffold_174091 (52655-52243) | |
| 106-550, gnl|panTro1|chr4 (61521063-61520643) | |
| 106-550, gnl|rheMac2|chr6 (53013902-53014318) | |
| 106-550, gnl|rn3|chr19 (35757575-35757163) | |
| 106-550, gnl|tetNig1|chrUn_random (18326962-18327374) | |
| 106-550, gnl|xenTro1|scaffold_984 (352368-351956) | |
| 791-923, gnl|bosTau2|chr1 (41680237-41680369) | |
| 791-923, gnl|Hg17|chr3 (124821876-124821744) | |
| 791-923, gnl|Mm7|chr16 (34669839-34669971) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 106-550, gnl|bosTau2|chr18 (14958801-14958351) | |
| 106-550, gnl|canFam2|chr5 (84591200-84591612) | |
| 106-550, gnl|danRer3|chr18 (20979689-20979277) | |
| 106-550, gnl|dasNov1|scaffold_3445 (88511-88925) | |
| 106-550, gnl|echTel1|scaffold_166784 (469-881) | |
| 106-550, gnl|fr1|chrUn (168727634-168728046) | |
| 106-550, gnl|galGal2|chr11 (937800-937388) | |
| 106-550, gnl|Hg17|chr16 (66500606-66501056) | |
| 106-550, gnl|hg17|chr5 (54688244-54688664) | |
| 106-550, gnl|loxAfr1|scaffold_972 (12163-12575) | |
| 106-550, gnl|mm7|chr8 (104512449-104512037) | |
| 106-550, gnl|Mm7|chr8 (104511997-104512447) | |
| 106-550, gnl|monDom2|scaffold_11 (60323672-60323262) | |
| 106-550, gnl|oryCun1|scaffold_174091 (52655-52243) | |
| 106-550, gnl|panTro1|chr4 (61521063-61520643) | |
| 106-550, gnl|rheMac2|chr6 (53013902-53014318) | |
| 106-550, gnl|rn3|chr19 (35757575-35757163) | |
| 106-550, gnl|tetNig1|chrUn_random (18326962-18327374) | |
| 106-550, gnl|xenTro1|scaffold_984 (352368-351956) | |
| 791-923, gnl|bosTau2|chr1 (41680237-41680369) | |
| 791-923, gnl|Hg17|chr3 (124821876-124821744) | |
| 791-923, gnl|Mm7|chr16 (34669839-34669971) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nep (0.183925) | |
| cut (0.169924) | |
| cst (0.140036) | |
| ute (0.132784) | |
| bla (0.124347) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| cut (0.169924) | |
| cst (0.140036) | |
| ute (0.132784) | |
| bla (0.124347) |