Non-Coding RNA Search

Ss1.1-Utr1-UTR010008E04.5

Sequence:


               
               GAGCCCGGAACCAGTCCAGGGCCTGCTCCAGGTACCGCCGGTCGGCCACCACGCCCTTCC
ACACGTTGGGCATCACGTGCACGTAGTCCCCCCGGCGCACGTGCACCCCCACGTAGGTAC
TCGGTCGGCTCCCGTTCACCCGCAGACCCCGCAGGAAATCCTGGGCCTCCTCGCGCACGT
GGTTATGCAGGGTGAACTCCCGGAGGATCTCGGTGCGCAGGTGGTGGTAGAAGGTCCAGG
AGCAGGGGTAGCCCGTGAGGCGCACGTACTCCCCCGGGATGTGGCGGTACCGCTCCTCCA
TCCAGTCGTTCAGGTGGTAGTTCTGCCAGGGGATCCTGCGGGCCGTGCTGGCGTGCAGGA
CCGGGAGGGTGATCCTGAAGATGGGGGCCAGCGTGCTGTGCATCTCGGGCGGGATGAAGG
CCGGCCGCCCGTTCATCCTGGCCAGCGCGTACAGGGTGGCGTACTCCCCCATCTGGTTCC
CCAGGCGGCCTTTGGCGTTGATGGTGAACATGCCCCCGGGGGGCAGGTGTCCAGGGACCA
GGACCAAGTGGCCTGGGGAGGCCCAGGGGTTGGGCACTAGAGCCAGGCGCTGGCGGCAGT
GGAAGATGATGGATATGGTGGAAGTGACGAAAAGGAAGAAGACGGTGGACAAGGAAGGGC
AGGTGGCCCAGAATGTCCTGGTGGGCATGGCTGGTTCTGGCTGGAAGGCAAAGTGGCGCT
GCTGGCAGCTCAGCAGGCTCCCTCCCCTCGGGTCGACTCCTCTCTCTGAATCTCTCGAAC
CTTCCAGCACCAAGGGCTGAAAACCCCGCCCAAGATCTACTCCAGGGGTAGGCGGGGTGG
CCAGGCTGCCCCAGCCAGGTGAGCCCAGAGCCCCTCCGTCTTCCTCCCTCCTCCCCCAGC
GCTGCAGGGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCCGGAACCAGTCCAGGGCCTGCTCCAGGTACCGCCGGTCGGCCACCACGCCCTTCC
ACACGTTGGGCATCACGTGCACGTAGTCCCCCCGGCGCACGTGCACCCCCACGTAGGTAC
TCGGTCGGCTCCCGTTCACCCGCAGACCCCGCAGGAAATCCTGGGCCTCCTCGCGCACGT
GGTTATGCAGGGTGAACTCCCGGAGGATCTCGGTGCGCAGGTGGTGGTAGAAGGTCCAGG
AGCAGGGGTAGCCCGTGAGGCGCACGTACTCCCCCGGGATGTGGCGGTACCGCTCCTCCA
TCCAGTCGTTCAGGTGGTAGTTCTGCCAGGGGATCCTGCGGGCCGTGCTGGCGTGCAGGA
CCGGGAGGGTGATCCTGAAGATGGGGGCCAGCGTGCTGTGCATCTCGGGCGGGATGAAGG
CCGGCCGCCCGTTCATCCTGGCCAGCGCGTACAGGGTGGCGTACTCCCCCATCTGGTTCC
CCAGGCGGCCTTTGGCGTTGATGGTGAACATGCCCCCGGGGGGCAGGTGTCCAGGGACCA
GGACCAAGTGGCCTGGGGAGGCCCAGGGGTTGGGCACTAGAGCCAGGCGCTGGCGGCAGT
GGAAGATGATGGATATGGTGGAAGTGACGAAAAGGAAGAAGACGGTGGACAAGGAAGGGC
AGGTGGCCCAGAATGTCCTGGTGGGCATGGCTGGTTCTGGCTGGAAGGCAAAGTGGCGCT
GCTGGCAGCTCAGCAGGCTCCCTCCCCTCGGGTCGACTCCTCTCTCTGAATCTCTCGAAC
CTTCCAGCACCAAGGGCTGAAAACCCCGCCCAAGATCTACTCCAGGGGTAGGCGGGGTGG
CCAGGCTGCCCCAGCCAGGTGAGCCCAGAGCCCCTCCGTCTTCCTCCCTCCTCCCCCAGC
GCTGCAGGGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9N268_SAISC

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9N268_SAISC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               360-479, - strand, RNAz p=0.767738
               

               
               560-679, - strand, RNAz p=0.91731
               

               
               730-822, - strand, RNAz p=0.582409

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-479, - strand, RNAz p=0.767738
               

               
               560-679, - strand, RNAz p=0.91731
               

               
               730-822, - strand, RNAz p=0.582409

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-684, gnl|bosTau2|chr18 (50510346-50511029)
               

               
               1-684, gnl|Hg17|chr19 (53875775-53875094)
               

               
               1-684, gnl|Mm7|chr7 (41855136-41855819)
               


               
               691-822, gnl|bosTau2|chr18 (49880925-49880793)
               

               
               691-822, gnl|canFam2|chr1 (110512899-110512427)
               

               
               691-822, gnl|hg17|chr19 (53890940-53891397)
               

               
               691-822, gnl|Hg17|chr19 (53891148-53891015)
               

               
               691-822, gnl|loxAfr1|scaffold_30521 (19009-18488)
               

               
               691-822, gnl|panTro1|chr20_random (24265835-24265382)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr18 (50510346-50511029)
               

               
               1-684, gnl|Hg17|chr19 (53875775-53875094)
               

               
               1-684, gnl|Mm7|chr7 (41855136-41855819)
               


               
               691-822, gnl|bosTau2|chr18 (49880925-49880793)
               

               
               691-822, gnl|canFam2|chr1 (110512899-110512427)
               

               
               691-822, gnl|hg17|chr19 (53890940-53891397)
               

               
               691-822, gnl|Hg17|chr19 (53891148-53891015)
               

               
               691-822, gnl|loxAfr1|scaffold_30521 (19009-18488)
               

               
               691-822, gnl|panTro1|chr20_random (24265835-24265382)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nmm (0.132802)

	360-479, - strand, RNAz p=0.767738
	560-679, - strand, RNAz p=0.91731
	730-822, - strand, RNAz p=0.582409

	1-684, gnl\|bosTau2\|chr18 (50510346-50511029)
	1-684, gnl\|Hg17\|chr19 (53875775-53875094)
	1-684, gnl\|Mm7\|chr7 (41855136-41855819)

	691-822, gnl\|bosTau2\|chr18 (49880925-49880793)
	691-822, gnl\|canFam2\|chr1 (110512899-110512427)
	691-822, gnl\|hg17\|chr19 (53890940-53891397)
	691-822, gnl\|Hg17\|chr19 (53891148-53891015)
	691-822, gnl\|loxAfr1\|scaffold_30521 (19009-18488)
	691-822, gnl\|panTro1\|chr20_random (24265835-24265382)