Ss1.1-Utr1-UTR010008F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCGGGAGGATCTCCATCGAGATGCACGGGACCCTGGAGGACCAGCTCAGCCACCTGCG GCAGTACGAGAAGAGCATTGTCAACTACAAGCCCAAGATCGACCAGCTGGAGGGCGACCA CCAGCTCATCCAGGAGGCGCTCATCTTCGACAACAAGCACACCAACTACACCATGGAGCA CATCCGTGTGGGCTGGGAGCAGCTCCTCACCACCATCGCCAGGACCATCAATGAGGTGGA GAACCAGATCCTGACCAGGGATGCCAAGGGCATCAGCCAGGAGCAGATGAACGAGTTCCG GGCCTCCTTCAACCACTTTGACCGGGATCACTCCGGCACGCTGGGTCCCGAGGAGTTCAA AGCCTGCCTCATCAGCTTGGGTTATGATATTGGCAACGACCCCCAGGGAGAGGCGGAATT TGCCCGCATCATGAGCATTGTGGACCCCAACCGCCTGGGGGTAGTGACGTTCCAGGCCTT CATCGATTTCATGTCCCGCGAGACGGCCGACACGGATACAGCAGATCAAGTCATGGCTTC CTTCAAGATCCTGGCTGGGGACAAGAATTACATCACGGTGGACGAGCTGCGCCGTGAGCT GCCGCCTGACCAGGCCGAGTACTGCATTGCGCGAATGGCCCCGTACACCGGCCCCGACGC CGTGCCCGGTGCTCTGGACTACATGTCCTTCTCCACAGCGCTGTACGGCGAGAGTGACCT CTAAGCCGCCCTGCCTGGTCCGCGACCTCGCCCCCATCCGCCCGTGCGAGCCCCGCCCTC CGCCTCTGCTGCCCCCGCCCCTCCGCCCCTTCCAGCCCGGGTTTGGTTTCTGCGCTCCGC CTCCAAAGGGGCGAGCTGGGACCCACGGGGCATCAAGCCTCCCTGCCCGTGAAGTGACAG TTTACAAAATTATTTTCTGCAAAAAAGAAAGTTACGTTAAAAAAAGTAAAAAACCAAAAA AACCACATATTTTATTATAGAAAAAAGTATTTTTTTCTCCACCAGACTTAAATGGAAAAG AGGAAAAATTAACTATTTGCACCGAAATGTTTTGTTTTGTTGTGACAGGAAAATAACCAA GCACAATGTTATATCCATCCTTTTTATCGATTTTTTTTTTTTTTTCTATCTGTACCATCT GCTGTATTCATTTCTCCAATCTCATGTCCATCTTGGTGTGGGAGTGGGGGTGGGGGTAGG GGATAATCTTGTCAAAAGGCACATTGGTGCATGTGTGTTTGCTAGCTCACTTGTCCATGA AAATATTTTATGATATTAAAGAAAATCTTTTGAAATGGCTGTTTTTTAAGGAAGAGAATT TCTGTGGCTTGTCTTCTCGTTTTTAAGTCCAGAGGTGTAATTAGCCTCTTTATCAGTGCA CATTTTTTTAAAAAAAGTATCGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCGGGAGGATCTCCATCGAGATGCACGGGACCCTGGAGGACCAGCTCAGCCACCTGCG GCAGTACGAGAAGAGCATTGTCAACTACAAGCCCAAGATCGACCAGCTGGAGGGCGACCA CCAGCTCATCCAGGAGGCGCTCATCTTCGACAACAAGCACACCAACTACACCATGGAGCA CATCCGTGTGGGCTGGGAGCAGCTCCTCACCACCATCGCCAGGACCATCAATGAGGTGGA GAACCAGATCCTGACCAGGGATGCCAAGGGCATCAGCCAGGAGCAGATGAACGAGTTCCG GGCCTCCTTCAACCACTTTGACCGGGATCACTCCGGCACGCTGGGTCCCGAGGAGTTCAA AGCCTGCCTCATCAGCTTGGGTTATGATATTGGCAACGACCCCCAGGGAGAGGCGGAATT TGCCCGCATCATGAGCATTGTGGACCCCAACCGCCTGGGGGTAGTGACGTTCCAGGCCTT CATCGATTTCATGTCCCGCGAGACGGCCGACACGGATACAGCAGATCAAGTCATGGCTTC CTTCAAGATCCTGGCTGGGGACAAGAATTACATCACGGTGGACGAGCTGCGCCGTGAGCT GCCGCCTGACCAGGCCGAGTACTGCATTGCGCGAATGGCCCCGTACACCGGCCCCGACGC CGTGCCCGGTGCTCTGGACTACATGTCCTTCTCCACAGCGCTGTACGGCGAGAGTGACCT CTAAGCCGCCCTGCCTGGTCCGCGACCTCGCCCCCATCCGCCCGTGCGAGCCCCGCCCTC CGCCTCTGCTGCCCCCGCCCCTCCGCCCCTTCCAGCCCGGGTTTGGTTTCTGCGCTCCGC CTCCAAAGGGGCGAGCTGGGACCCACGGGGCATCAAGCCTCCCTGCCCGTGAAGTGACAG TTTACAAAATTATTTTCTGCAAAAAAGAAAGTTACGTTAAAAAAAGTAAAAAACCAAAAA AACCACATATTTTATTATAGAAAAAAGTATTTTTTTCTCCACCAGACTTAAATGGAAAAG AGGAAAAATTAACTATTTGCACCGAAATGTTTTGTTTTGTTGTGACAGGAAAATAACCAA GCACAATGTTATATCCATCCTTTTTATCGATTTTTTTTTTTTTTTCTATCTGTACCATCT GCTGTATTCATTTCTCCAATCTCATGTCCATCTTGGTGTGGGAGTGGGGGTGGGGGTAGG GGATAATCTTGTCAAAAGGCACATTGGTGCATGTGTGTTTGCTAGCTCACTTGTCCATGA AAATATTTTATGATATTAAAGAAAATCTTTTGAAATGGCTGTTTTTTAAGGAAGAGAATT TCTGTGGCTTGTCTTCTCGTTTTTAAGTCCAGAGGTGTAATTAGCCTCTTTATCAGTGCA CATTTTTTTAAAAAAAGTATCGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-178, gnl|bosTau2|chr10 (55165234-55165057) | |
| 1-178, gnl|canFam2|chr8 (45756097-45756296) | |
| 1-178, gnl|danRer3|chr13 (38988085-38988270) | |
| 1-178, gnl|dasNov1|scaffold_89417 (5343-5550) | |
| 1-178, gnl|echTel1|scaffold_204200 (832-1022) | |
| 1-178, gnl|fr1|chrUn (2848909-2848720) | |
| 1-178, gnl|galGal2|chr5 (25196903-25196713) | |
| 1-178, gnl|hg17|chr14 (68417265-68417464) | |
| 1-178, gnl|Hg17|chr14 (68417457-68417280) | |
| 1-178, gnl|loxAfr1|scaffold_9916 (7107-7306) | |
| 1-178, gnl|mm7|chr12 (78135952-78136151) | |
| 1-178, gnl|Mm7|chr12 (78136144-78135967) | |
| 1-178, gnl|monDom2|scaffold_8 (84921881-84922089) | |
| 1-178, gnl|oryCun1|scaffold_187628 (3754-3556) | |
| 1-178, gnl|panTro1|chr15 (68083963-68084162) | |
| 1-178, gnl|rheMac2|chr7 (131990714-131990913) | |
| 1-178, gnl|rn3|chr6 (103197430-103197629) | |
| 1-178, gnl|tetNig1|chrUn_random (130118071-130118270) | |
| 1-178, gnl|xenTro1|scaffold_117 (662079-661886) | |
| 564-1179, gnl|bosTau2|chr10 (55159782-55159156) | |
| 564-1179, gnl|Hg17|chr14 (68411489-68410900) | |
| 564-1179, gnl|Mm7|chr12 (78131486-78130847) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-178, gnl|bosTau2|chr10 (55165234-55165057) | |
| 1-178, gnl|canFam2|chr8 (45756097-45756296) | |
| 1-178, gnl|danRer3|chr13 (38988085-38988270) | |
| 1-178, gnl|dasNov1|scaffold_89417 (5343-5550) | |
| 1-178, gnl|echTel1|scaffold_204200 (832-1022) | |
| 1-178, gnl|fr1|chrUn (2848909-2848720) | |
| 1-178, gnl|galGal2|chr5 (25196903-25196713) | |
| 1-178, gnl|hg17|chr14 (68417265-68417464) | |
| 1-178, gnl|Hg17|chr14 (68417457-68417280) | |
| 1-178, gnl|loxAfr1|scaffold_9916 (7107-7306) | |
| 1-178, gnl|mm7|chr12 (78135952-78136151) | |
| 1-178, gnl|Mm7|chr12 (78136144-78135967) | |
| 1-178, gnl|monDom2|scaffold_8 (84921881-84922089) | |
| 1-178, gnl|oryCun1|scaffold_187628 (3754-3556) | |
| 1-178, gnl|panTro1|chr15 (68083963-68084162) | |
| 1-178, gnl|rheMac2|chr7 (131990714-131990913) | |
| 1-178, gnl|rn3|chr6 (103197430-103197629) | |
| 1-178, gnl|tetNig1|chrUn_random (130118071-130118270) | |
| 1-178, gnl|xenTro1|scaffold_117 (662079-661886) | |
| 564-1179, gnl|bosTau2|chr10 (55159782-55159156) | |
| 564-1179, gnl|Hg17|chr14 (68411489-68410900) | |
| 564-1179, gnl|Mm7|chr12 (78131486-78130847) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| aor (1.36692) | |
| pla (0.401016) | |
| sag (0.36543) | |
| cly (0.361925) | |
| cst (0.280073) | |
| cga (0.279096) | |
| cov (0.264306) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cag (0.151194) | |
| fat (0.147427) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (1.36692) | |
| pla (0.401016) | |
| sag (0.36543) | |
| cly (0.361925) | |
| cst (0.280073) | |
| cga (0.279096) | |
| cov (0.264306) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cag (0.151194) | |
| fat (0.147427) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |