Non-Coding RNA Search

Ss1.1-Utr1-UTR010009C01.5

Sequence:


               
               ACCCCCCGCCCCACAGCCATGGCTGCCGCCGCTGCCGCCGGCCCTGGGGCGTCCCTGTCC
CCAGACGAATTGCTTCCGAAAGGCGATGCCGAGAAGCCTGAGGACGAGCTCGAGGAGGAA
GACGACGACGAGCTAGATGAGACCCTGTCGGAGAGACTGTGGGGTCTGACGGAGATGTTC
CCGGAGAGGGTCCGGTCCGCGGCTGGAGCCACTTTTGATCTCTCCCTCTTCGTGGCTCAA
AAAATGTACAGGTTTTCTAGGGCAGCATTGTGGATTGGAACCACTTCCTTCATGATCCTG
GTTCTTCCTGTCGTCTTTGAGACTGAGAAGTTGCAGATGGAGCAACAGCAGCAACTGCAG
CAACGGCAGATACTTCTAGGGCCTAACACAGGGCTGTCAGGAGGAATGCCTGGGGCTCTA
CCATCACTTCCCGGAAAGATCTAGATTGTTACTGCCGTGTTTGACCTGTCTTGGTGGGAG
AAATTTGAAAATTCAATAGTGTTTGAACTGCTGATTACTGGTTTTTTTTTTTTTTTTTTT
TAACTTTGGCACATTGATCCATCTAAACCTGGTGGGGAGACTTCCCATTGTCTTGTGGAG
AGACTCCAAACTCGCAGCCATGCACTCCATGCTATCCTGACTTATTTTTTTCTGTCCTCA
CTCTGATAGCAAGCAGAGTGCAGCACTGCAGATGGTTACACCACCTCTGGCCATCCCACC
CCTTTCCCTAAATTACTCTTGACCAAAAGATTCCTCACTATCCCATTGTGGGGTAGGAAC
TAATGACACTGGGAAGGGTGTACCCTGACCAGTAACAGCTATTTGGTTTTTTAAGAGTGG
AATGCACACAATATAAAATACAAAATGCATTACAGCTGTCCTGTAACGCAGCCACTGTGA
ATTTCTACGTATGTTGGAGGGAGGGCTGGCAGCAGCTTCAACCACAAGATGGGGACTGTG
GAGGACAAAGCAAGAGCTCATTTCCTCTGCATATTTTGGCTGTTAGATCTGTGTGTGTGT
CTAAAAGAGAGGGGGGGAGAAAACTCAGTGCTCACTTTTTGTATTTAAATATTAAAATGA
TCCCAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCCCGCCCCACAGCCATGGCTGCCGCCGCTGCCGCCGGCCCTGGGGCGTCCCTGTCC
CCAGACGAATTGCTTCCGAAAGGCGATGCCGAGAAGCCTGAGGACGAGCTCGAGGAGGAA
GACGACGACGAGCTAGATGAGACCCTGTCGGAGAGACTGTGGGGTCTGACGGAGATGTTC
CCGGAGAGGGTCCGGTCCGCGGCTGGAGCCACTTTTGATCTCTCCCTCTTCGTGGCTCAA
AAAATGTACAGGTTTTCTAGGGCAGCATTGTGGATTGGAACCACTTCCTTCATGATCCTG
GTTCTTCCTGTCGTCTTTGAGACTGAGAAGTTGCAGATGGAGCAACAGCAGCAACTGCAG
CAACGGCAGATACTTCTAGGGCCTAACACAGGGCTGTCAGGAGGAATGCCTGGGGCTCTA
CCATCACTTCCCGGAAAGATCTAGATTGTTACTGCCGTGTTTGACCTGTCTTGGTGGGAG
AAATTTGAAAATTCAATAGTGTTTGAACTGCTGATTACTGGTTTTTTTTTTTTTTTTTTT
TAACTTTGGCACATTGATCCATCTAAACCTGGTGGGGAGACTTCCCATTGTCTTGTGGAG
AGACTCCAAACTCGCAGCCATGCACTCCATGCTATCCTGACTTATTTTTTTCTGTCCTCA
CTCTGATAGCAAGCAGAGTGCAGCACTGCAGATGGTTACACCACCTCTGGCCATCCCACC
CCTTTCCCTAAATTACTCTTGACCAAAAGATTCCTCACTATCCCATTGTGGGGTAGGAAC
TAATGACACTGGGAAGGGTGTACCCTGACCAGTAACAGCTATTTGGTTTTTTAAGAGTGG
AATGCACACAATATAAAATACAAAATGCATTACAGCTGTCCTGTAACGCAGCCACTGTGA
ATTTCTACGTATGTTGGAGGGAGGGCTGGCAGCAGCTTCAACCACAAGATGGGGACTGTG
GAGGACAAAGCAAGAGCTCATTTCCTCTGCATATTTTGGCTGTTAGATCTGTGTGTGTGT
CTAAAAGAGAGGGGGGGAGAAAACTCAGTGCTCACTTTTTGTATTTAAATATTAAAATGA
TCCCAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5JZD3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5JZD3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               129-718, - strand, RNAz p=0.981773

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-718, - strand, RNAz p=0.981773

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               64-334, gnl|bosTau2|chr11 (54798922-54798653)
               

               
               64-334, gnl|Hg17|chr11 (86647918-86647610)
               

               
               64-334, gnl|Mm7|chr4 (107136859-107136535)
               


               
               368-751, gnl|bosTau2|chr11 (54798658-54798274)
               

               
               368-751, gnl|Hg17|chr11 (86647654-86647236)
               


               
               835-1104, gnl|bosTau2|chr11 (54798188-54797931)
               

               
               835-1104, gnl|Hg17|chr11 (86647144-86646883)
               

               
               835-1104, gnl|Mm7|chr4 (107136110-107135866)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-334, gnl|bosTau2|chr11 (54798922-54798653)
               

               
               64-334, gnl|Hg17|chr11 (86647918-86647610)
               

               
               64-334, gnl|Mm7|chr4 (107136859-107136535)
               


               
               368-751, gnl|bosTau2|chr11 (54798658-54798274)
               

               
               368-751, gnl|Hg17|chr11 (86647654-86647236)
               


               
               835-1104, gnl|bosTau2|chr11 (54798188-54797931)
               

               
               835-1104, gnl|Hg17|chr11 (86647144-86646883)
               

               
               835-1104, gnl|Mm7|chr4 (107136110-107135866)

Expressed library(ies): 34 entry(ies)

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Expressed library(ies): 34 entry(ies)

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               ecc (0.575175)
               

               
               fce (0.543183)
               

               
               ton (0.351)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               csp (0.322373)
               

               
               nbm (0.297974)
               

               
               jej (0.296765)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.575175)
               

               
               fce (0.543183)
               

               
               ton (0.351)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               csp (0.322373)
               

               
               nbm (0.297974)
               

               
               jej (0.296765)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	64-334, gnl\|bosTau2\|chr11 (54798922-54798653)
	64-334, gnl\|Hg17\|chr11 (86647918-86647610)
	64-334, gnl\|Mm7\|chr4 (107136859-107136535)

	368-751, gnl\|bosTau2\|chr11 (54798658-54798274)
	368-751, gnl\|Hg17\|chr11 (86647654-86647236)

	835-1104, gnl\|bosTau2\|chr11 (54798188-54797931)
	835-1104, gnl\|Hg17\|chr11 (86647144-86646883)
	835-1104, gnl\|Mm7\|chr4 (107136110-107135866)

	ecc (0.575175)
	fce (0.543183)
	ton (0.351)
	vin (0.332557)
	nje (0.33184)
	csp (0.322373)
	nbm (0.297974)
	jej (0.296765)
	hyp (0.285673)
	cga (0.279096)
	clu (0.239292)
	ebs (0.236602)
	ece (0.229305)
	nms (0.213858)
	mas (0.210305)
	fcc (0.197785)
	eje (0.197668)
	ldo (0.194005)
	cmu (0.186393)
	fty (0.17584)
	fhi (0.169578)
	csk (0.140746)
	cst (0.140036)
	nca (0.136874)
	che (0.136314)
	ssp (0.13552)
	nmm (0.132802)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	med (0.116252)
	spc (0.113366)