Ss1.1-Utr1-UTR010009F09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCCGCGGCGCGAGCAGGCGGCTCTGCCGGCAGCAGTTACCCAGGGTTTCCGGTGAGAG GCCAGAGCAGGAGAAGCCGTCGGGACGTCGGCGGTGGGGTTCTGCTCATAACCTAACGTT GCAAACAACAATGAAGAACCAAGACAAAAAGAATGGGGCTGCCAAGCAATCTGGCCACAC TTCCAACCCCAAAAACACCCCGGGGCAACCGGAAGCAGGACCAGAGGGAGGCCAGGGGCG GCCCAGCCAGTCTGCTCCCACGACAGAAGCTGAAGGTTCCACCAGCCAGGCTCCAGGGAA GGCTGAGGGAGCACAAGCCAAAACTGGGGCCCTCCGTGATGTCTCAGAGGAGTTGAGCCG CCAATTGGAAGACATCCTCAGTACATACTGTATAGACAACAATCAGGGGGGCCCAGGCGA AGATGGGGCACAGGGTGAGCCTGGTGAACCTGAAGATGCAGAGAAGTCCCGGACCTATGC CTCAAGGAATGGGGAGCCTGAGCCAGAGACCCCAGTAGTCAATGGTGAGAAGGAGCCCTC CAAGGGGGAGCCGGGCGCAGACGAGATCCGGGCAAGTGACGAGGTCGTAGACCGAGACCA CCGAAGGCCCCAGGAAAAGAAGAAAGCCAAAGGTCTAGGTGAGCAGAGGGCAGCTGCTTA GCAGACCTTGAACACGCTGAGTACCCCAGAGGAGAAGCTCGCGGCTCTGTGCAAGAAGTA TGCTGAACTGAGCTGGGAGAGAAACTGGTACCTGCTGGCTGTGCGCTTCTGCTCATCCTG AGTGTCCGTTTCCAGATTCTTGAGCTGGGGCCCTTGGGGTTACTGGGGGAGTGTGTGAAG CACCCGCATGGTGTCATCTGAGCTGTGGTGACAGGAGTCAGGTCAGCTCAGGAGACCTTG GGTCCCCACGGGGAGAGCCCCAAAGGGCTCTTACCTGCCTGCCCTGCCCCCACCCCATCC CCATCCCTGTCCCCAGCTGGAGGAGCACCGGAACTCCCAGAAGCAGATGAAGCTCCTGCA GAAGAAGCAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCCGCGGCGCGAGCAGGCGGCTCTGCCGGCAGCAGTTACCCAGGGTTTCCGGTGAGAG GCCAGAGCAGGAGAAGCCGTCGGGACGTCGGCGGTGGGGTTCTGCTCATAACCTAACGTT GCAAACAACAATGAAGAACCAAGACAAAAAGAATGGGGCTGCCAAGCAATCTGGCCACAC TTCCAACCCCAAAAACACCCCGGGGCAACCGGAAGCAGGACCAGAGGGAGGCCAGGGGCG GCCCAGCCAGTCTGCTCCCACGACAGAAGCTGAAGGTTCCACCAGCCAGGCTCCAGGGAA GGCTGAGGGAGCACAAGCCAAAACTGGGGCCCTCCGTGATGTCTCAGAGGAGTTGAGCCG CCAATTGGAAGACATCCTCAGTACATACTGTATAGACAACAATCAGGGGGGCCCAGGCGA AGATGGGGCACAGGGTGAGCCTGGTGAACCTGAAGATGCAGAGAAGTCCCGGACCTATGC CTCAAGGAATGGGGAGCCTGAGCCAGAGACCCCAGTAGTCAATGGTGAGAAGGAGCCCTC CAAGGGGGAGCCGGGCGCAGACGAGATCCGGGCAAGTGACGAGGTCGTAGACCGAGACCA CCGAAGGCCCCAGGAAAAGAAGAAAGCCAAAGGTCTAGGTGAGCAGAGGGCAGCTGCTTA GCAGACCTTGAACACGCTGAGTACCCCAGAGGAGAAGCTCGCGGCTCTGTGCAAGAAGTA TGCTGAACTGAGCTGGGAGAGAAACTGGTACCTGCTGGCTGTGCGCTTCTGCTCATCCTG AGTGTCCGTTTCCAGATTCTTGAGCTGGGGCCCTTGGGGTTACTGGGGGAGTGTGTGAAG CACCCGCATGGTGTCATCTGAGCTGTGGTGACAGGAGTCAGGTCAGCTCAGGAGACCTTG GGTCCCCACGGGGAGAGCCCCAAAGGGCTCTTACCTGCCTGCCCTGCCCCCACCCCATCC CCATCCCTGTCCCCAGCTGGAGGAGCACCGGAACTCCCAGAAGCAGATGAAGCTCCTGCA GAAGAAGCAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 810-910, - strand, RNAz p=0.749817 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 810-910, - strand, RNAz p=0.749817 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 98-309, gnl|bosTau2|chr2 (73478695-73478906) | |
| 98-309, gnl|canFam2|chr2 (71914168-71913921) | |
| 98-309, gnl|echTel1|scaffold_287410 (99125-98883) | |
| 98-309, gnl|hg17|chr1 (32314978-32315216) | |
| 98-309, gnl|Hg17|chr1 (32315007-32315209) | |
| 98-309, gnl|loxAfr1|scaffold_55688 (5272-5025) | |
| 98-309, gnl|mm7|chr4 (129085132-129084897) | |
| 98-309, gnl|Mm7|chr4 (129085101-129084902) | |
| 98-309, gnl|monDom2|scaffold_43 (7594770-7594497) | |
| 98-309, gnl|oryCun1|scaffold_177805 (133855-134083) | |
| 98-309, gnl|panTro1|chr1 (33074099-33074337) | |
| 324-659, gnl|bosTau2|chr2 (73479785-73480120) | |
| 324-659, gnl|Hg17|chr1 (32315960-32316301) | |
| 324-659, gnl|Mm7|chr4 (129084190-129083858) | |
| 731-910, gnl|bosTau2|chr2 (73482307-73482493) | |
| 731-910, gnl|canFam2|chr2 (71909405-71909030) | |
| 731-910, gnl|dasNov1|scaffold_3246 (51442-51058) | |
| 731-910, gnl|hg17|chr1 (32322090-32322540) | |
| 731-910, gnl|Hg17|chr1 (32322376-32322612) | |
| 731-910, gnl|mm7|chr4 (129079579-129079275) | |
| 731-910, gnl|Mm7|chr4 (129079448-129079227) | |
| 731-910, gnl|oryCun1|scaffold_112916 (4327-4704) | |
| 731-910, gnl|panTro1|chr1 (33081210-33081660) | |
| 731-910, gnl|rheMac2|chr1 (34943301-34943747) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-309, gnl|bosTau2|chr2 (73478695-73478906) | |
| 98-309, gnl|canFam2|chr2 (71914168-71913921) | |
| 98-309, gnl|echTel1|scaffold_287410 (99125-98883) | |
| 98-309, gnl|hg17|chr1 (32314978-32315216) | |
| 98-309, gnl|Hg17|chr1 (32315007-32315209) | |
| 98-309, gnl|loxAfr1|scaffold_55688 (5272-5025) | |
| 98-309, gnl|mm7|chr4 (129085132-129084897) | |
| 98-309, gnl|Mm7|chr4 (129085101-129084902) | |
| 98-309, gnl|monDom2|scaffold_43 (7594770-7594497) | |
| 98-309, gnl|oryCun1|scaffold_177805 (133855-134083) | |
| 98-309, gnl|panTro1|chr1 (33074099-33074337) | |
| 324-659, gnl|bosTau2|chr2 (73479785-73480120) | |
| 324-659, gnl|Hg17|chr1 (32315960-32316301) | |
| 324-659, gnl|Mm7|chr4 (129084190-129083858) | |
| 731-910, gnl|bosTau2|chr2 (73482307-73482493) | |
| 731-910, gnl|canFam2|chr2 (71909405-71909030) | |
| 731-910, gnl|dasNov1|scaffold_3246 (51442-51058) | |
| 731-910, gnl|hg17|chr1 (32322090-32322540) | |
| 731-910, gnl|Hg17|chr1 (32322376-32322612) | |
| 731-910, gnl|mm7|chr4 (129079579-129079275) | |
| 731-910, gnl|Mm7|chr4 (129079448-129079227) | |
| 731-910, gnl|oryCun1|scaffold_112916 (4327-4704) | |
| 731-910, gnl|panTro1|chr1 (33081210-33081660) | |
| 731-910, gnl|rheMac2|chr1 (34943301-34943747) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |