Non-Coding RNA Search

Ss1.1-Utr1-UTR010010A02.5

Sequence:


               
               ATTCGGGGGCTGGAGCTAGGAACGTCGACGTCGGCTCCTGAGCCGGGCGCAGTCTCACTC
CCAATTGGCTGGGCCTCTGGGCCGCCCTTCTCCGCGCGCCACCCCTGGGTTCCCTTCCCG
GCCCTCAGTAGAAATACTGCCCTCTCCGTTTTTGACCCCGGTCCTTCCTCCCCTTCTTCC
CTCTCTCCTGCAGCCGCTGTCGCTTCAGGCGCCCCTGCTCCCGGAGGAGCTCCCGGTTTA
GTGATGGGGTCCCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAG
GAGACTGGCTTTTCCCACAGTCAGATCACCCGCCTCTACAGCCGGTTCACCAGCCTGGAC
AAAGGAGAGAATGGGACTCTCAGCCGGGAAGATTTCCAGCGGATTCCAGAACTTGCCATC
AACCCATTAGGGGACCGGATCATCAATGCTTTCTTTCCAGAAGGAGAGGACCAGGTAAAC
TTCCGTGGCTTCATGAGAACTTTGGCTCATTTCCGACCCATTGAGGATAATGAAAAGAGC
AAAGATATGAATGGACCAGAACCACTCAATAGCCGAAGCAACAAACTGCACTTTGCTTTT
CGACTGTATGACTTGGATAAAGATGACAAGATCTCCCGTGACGAGCTGTTACAGGTGCTA
CGCATGATGGTTGGGGTGAATATCTCAGATGAGCAGCTGGGCAGCATCGCAGACAGGACC
ATCCAGGAGGCTGACCAGGATGGGGACAGCGCCATCTCTTTCACGGAATTTGTTAAGGTT
TTAGAGAAGGTGGATGTAGAACAGAAAATGAGCATCCGATTTCTTCACTGAAGGACTGAG
ACCAAACTGTTCGTGGGGATTTAATGAGTATGTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGGGGGCTGGAGCTAGGAACGTCGACGTCGGCTCCTGAGCCGGGCGCAGTCTCACTC
CCAATTGGCTGGGCCTCTGGGCCGCCCTTCTCCGCGCGCCACCCCTGGGTTCCCTTCCCG
GCCCTCAGTAGAAATACTGCCCTCTCCGTTTTTGACCCCGGTCCTTCCTCCCCTTCTTCC
CTCTCTCCTGCAGCCGCTGTCGCTTCAGGCGCCCCTGCTCCCGGAGGAGCTCCCGGTTTA
GTGATGGGGTCCCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAG
GAGACTGGCTTTTCCCACAGTCAGATCACCCGCCTCTACAGCCGGTTCACCAGCCTGGAC
AAAGGAGAGAATGGGACTCTCAGCCGGGAAGATTTCCAGCGGATTCCAGAACTTGCCATC
AACCCATTAGGGGACCGGATCATCAATGCTTTCTTTCCAGAAGGAGAGGACCAGGTAAAC
TTCCGTGGCTTCATGAGAACTTTGGCTCATTTCCGACCCATTGAGGATAATGAAAAGAGC
AAAGATATGAATGGACCAGAACCACTCAATAGCCGAAGCAACAAACTGCACTTTGCTTTT
CGACTGTATGACTTGGATAAAGATGACAAGATCTCCCGTGACGAGCTGTTACAGGTGCTA
CGCATGATGGTTGGGGTGAATATCTCAGATGAGCAGCTGGGCAGCATCGCAGACAGGACC
ATCCAGGAGGCTGACCAGGATGGGGACAGCGCCATCTCTTTCACGGAATTTGTTAAGGTT
TTAGAGAAGGTGGATGTAGAACAGAAAATGAGCATCCGATTTCTTCACTGAAGGACTGAG
ACCAAACTGTTCGTGGGGATTTAATGAGTATGTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57108121|ref|XP_535438.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57108121|ref|XP_535438.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               495-614, - strand, RNAz p=0.988649

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               495-614, - strand, RNAz p=0.988649

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               217-852, gnl|bosTau2|chr10 (24284605-24285241)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-852, gnl|bosTau2|chr10 (24284605-24285241)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.267344)
               

               
               ill (0.175593)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               ill (0.175593)
               

               
               pgl (0.118483)