Ss1.1-Utr1-UTR010010A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGACCGGCGGTCCATGGCAGCCTCCACGCTCTGGTTTTCGCTGCTACTGGCGGCAGCT TCCGCTGGGCGGGCGACGGCCCTGTGGCCATGGCCCCAGTACATCAAAACTTCCGACTGG AGCTACACCATCGTACCGCACACCTTCCAGTTCCAGTACCACAAGAGTTCGGCCGCGCAG GTGGGCTGCTCCGTCCTCGACGAGGCCTTCCAACGCTACCGTGACCTGCTCTTCGGTTCC GTGACTTTGCACTTTCGCCATCGCGTGGAAAAATGGCATATATCAGAGAAGAATTCCTTG GTTGTCCTCGTAGTTACTCCTGGATGTGACCAGCTTCCTTCTTTGGAGTCGGTGGAGAAT TACACGCTGACTATAAATGATGAGCAGTGTTTCCTCCTCTCAGAGACTGTCTGGGGCGCC CTCCGAGGTCTGGAGACTTTTAGCCAGCTTATTTGGAAGTCTCCTGAGGGCACGTTCTAT ATCAACAGGACGGAGATCGAGGACTTCCCCCGCTTCCCCCACCGGGGCTTGTTGTTGGAC ACATCTCGCCATTACCTGCCACTGGCTAGCATCCTGGACACTCTGGATGTCATGGCATAC AATAAATTCAACGTGTTCCATTGGCATCTGGTTGATGACTCTTCCTTCCCATACGAGAGC TTCACTTTTCCAGACCTCACCAAAAAGGGCTCCTACAACCCTTCCACCCACATCTACACA GCACGGGATGTGAAGGAGGTGATTGAATATGCACGGCTTCGGGGTATCCGTGTGTTGGCA GAGTTTGACACTCCTGGCCACACTCAGTCCTGGGGACCAGGTGTCCCTGGATTATTAACT CCCTGCTACTCTGGGTCTCAACCATCTGGCACCTTTGGACCAGTGAATCCCACTCTCAAC TACACCTATGAGTTCATGAGCACGTTCTTCTCAGAGATCAGCTCTGTCTTCCCAGATTTT TATCTTCACCTTGGAGGAGATGAGGTGGATTTCACCTGCTGGAAGTCTAACCCAGATATC CAGAATTTTATGAAGCAGAAAGGCTTTGGTAAGGACTTCAAGAAGCTGGAGTCCTTCTAC ATCCAGACGCTACTGGGCATTGTCTCTGGCTATGGCAAGGGCTATGTGGTGTGGCAGGAG GTATTTGACAATAAAGTCAAGGTTCGGCCAGACACAATCATCCAGGTGTGGCGAGAAGAG ATACCAGTAAAGTACATGAAAGAGATGGAACTGGTCACCCTTGCTGGCTTCCGGGCCCTG CTGTCTGCCCCCTGGTACCTGAACCATATAACATATGGCCCTGACTGGAAGGAGGTCTAC ATGGTGGAGCCCCTGGCATTTGAAGGCACCCCTGAGCAGAAGGCTCTGGTGATTGGTGGA GAGGCCTGTATGTGGGGAGAGTATGTGGACAGCACAAACCTGGTCCCCAGACTCTGGCCT AGAGCAGGGGCTGTTGCCGAGAGGCTGTGGAGCAACAAGGCGGTGACCAACCTGGACTTT GCCTTTAAACGTCTGACACACTTCCGATGTGAACTGCTGAGGCGGGGTGTCCAGGCCCAG CCCCTCAGCGTAGGCTACTGTGACGTGGAGTTTGAACAAACCTGAGCAAGCAGCACCAGG CACCAAGGAGGGTGCTGGCCCTAGGAGAGCTTCCACTGCACCTCGCCCCGGGGGACGGAG CCCCTGCCCACATGCCCCTGTGCCTGGAGACAAGGGGGGCTGGTGCTGGAGCTGGTGTCC AATAAAGAGTGATGTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGACCGGCGGTCCATGGCAGCCTCCACGCTCTGGTTTTCGCTGCTACTGGCGGCAGCT TCCGCTGGGCGGGCGACGGCCCTGTGGCCATGGCCCCAGTACATCAAAACTTCCGACTGG AGCTACACCATCGTACCGCACACCTTCCAGTTCCAGTACCACAAGAGTTCGGCCGCGCAG GTGGGCTGCTCCGTCCTCGACGAGGCCTTCCAACGCTACCGTGACCTGCTCTTCGGTTCC GTGACTTTGCACTTTCGCCATCGCGTGGAAAAATGGCATATATCAGAGAAGAATTCCTTG GTTGTCCTCGTAGTTACTCCTGGATGTGACCAGCTTCCTTCTTTGGAGTCGGTGGAGAAT TACACGCTGACTATAAATGATGAGCAGTGTTTCCTCCTCTCAGAGACTGTCTGGGGCGCC CTCCGAGGTCTGGAGACTTTTAGCCAGCTTATTTGGAAGTCTCCTGAGGGCACGTTCTAT ATCAACAGGACGGAGATCGAGGACTTCCCCCGCTTCCCCCACCGGGGCTTGTTGTTGGAC ACATCTCGCCATTACCTGCCACTGGCTAGCATCCTGGACACTCTGGATGTCATGGCATAC AATAAATTCAACGTGTTCCATTGGCATCTGGTTGATGACTCTTCCTTCCCATACGAGAGC TTCACTTTTCCAGACCTCACCAAAAAGGGCTCCTACAACCCTTCCACCCACATCTACACA GCACGGGATGTGAAGGAGGTGATTGAATATGCACGGCTTCGGGGTATCCGTGTGTTGGCA GAGTTTGACACTCCTGGCCACACTCAGTCCTGGGGACCAGGTGTCCCTGGATTATTAACT CCCTGCTACTCTGGGTCTCAACCATCTGGCACCTTTGGACCAGTGAATCCCACTCTCAAC TACACCTATGAGTTCATGAGCACGTTCTTCTCAGAGATCAGCTCTGTCTTCCCAGATTTT TATCTTCACCTTGGAGGAGATGAGGTGGATTTCACCTGCTGGAAGTCTAACCCAGATATC CAGAATTTTATGAAGCAGAAAGGCTTTGGTAAGGACTTCAAGAAGCTGGAGTCCTTCTAC ATCCAGACGCTACTGGGCATTGTCTCTGGCTATGGCAAGGGCTATGTGGTGTGGCAGGAG GTATTTGACAATAAAGTCAAGGTTCGGCCAGACACAATCATCCAGGTGTGGCGAGAAGAG ATACCAGTAAAGTACATGAAAGAGATGGAACTGGTCACCCTTGCTGGCTTCCGGGCCCTG CTGTCTGCCCCCTGGTACCTGAACCATATAACATATGGCCCTGACTGGAAGGAGGTCTAC ATGGTGGAGCCCCTGGCATTTGAAGGCACCCCTGAGCAGAAGGCTCTGGTGATTGGTGGA GAGGCCTGTATGTGGGGAGAGTATGTGGACAGCACAAACCTGGTCCCCAGACTCTGGCCT AGAGCAGGGGCTGTTGCCGAGAGGCTGTGGAGCAACAAGGCGGTGACCAACCTGGACTTT GCCTTTAAACGTCTGACACACTTCCGATGTGAACTGCTGAGGCGGGGTGTCCAGGCCCAG CCCCTCAGCGTAGGCTACTGTGACGTGGAGTTTGAACAAACCTGAGCAAGCAGCACCAGG CACCAAGGAGGGTGCTGGCCCTAGGAGAGCTTCCACTGCACCTCGCCCCGGGGGACGGAG CCCCTGCCCACATGCCCCTGTGCCTGGAGACAAGGGGGGCTGGTGCTGGAGCTGGTGTCC AATAAAGAGTGATGTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 3-121, - strand, RNAz p=0.510517 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-121, - strand, RNAz p=0.510517 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 3-260, gnl|bosTau2|chr10 (10761911-10761654) | |
| 3-260, gnl|canFam2|chr30 (38860731-38861125) | |
| 3-260, gnl|echTel1|scaffold_314079 (31764-32173) | |
| 3-260, gnl|hg17|chr15 (70455043-70455467) | |
| 3-260, gnl|Hg17|chr15 (70455379-70455123) | |
| 3-260, gnl|mm7|chr9 (59566975-59566552) | |
| 3-260, gnl|Mm7|chr9 (59566638-59566895) | |
| 3-260, gnl|oryCun1|scaffold_160527 (3897-4323) | |
| 3-260, gnl|panTro1|chr16 (71095836-71096260) | |
| 3-260, gnl|rheMac2|chr7 (51024852-51025275) | |
| 3-260, gnl|rn3|chr8 (63382628-63382211) | |
| 474-586, gnl|bosTau2|chr10 (10737807-10737695) | |
| 474-586, gnl|canFam2|chr30 (38842143-38842266) | |
| 474-586, gnl|danRer3|chr25 (7095224-7095101) | |
| 474-586, gnl|echTel1|scaffold_308039 (821-698) | |
| 474-586, gnl|fr1|chrUn (74250927-74250819) | |
| 474-586, gnl|galGal2|chr10 (1052611-1052504) | |
| 474-586, gnl|hg17|chr15 (70432445-70432568) | |
| 474-586, gnl|Hg17|chr15 (70432574-70432462) | |
| 474-586, gnl|loxAfr1|scaffold_94576 (2432-2309) | |
| 474-586, gnl|mm7|chr9 (59584345-59584222) | |
| 474-586, gnl|Mm7|chr9 (59584214-59584326) | |
| 474-586, gnl|monDom2|scaffold_14 (16789398-16789291) | |
| 474-586, gnl|oryCun1|scaffold_192471 (8364-8241) | |
| 474-586, gnl|panTro1|chr16_random (19761699-19761598) | |
| 474-586, gnl|rheMac2|chr7 (50999907-51000030) | |
| 474-586, gnl|rn3|chr8 (63399640-63399524) | |
| 474-586, gnl|tetNig1|chrUn_random (2820824-2820932) | |
| 819-1002, gnl|bosTau2|chr10 (10735204-10735021) | |
| 819-1002, gnl|canFam2|chr30 (38839767-38839943) | |
| 819-1002, gnl|danRer3|chr25 (7099124-7098948) | |
| 819-1002, gnl|dasNov1|scaffold_38394 (7915-7739) | |
| 819-1002, gnl|echTel1|scaffold_225038 (9468-9636) | |
| 819-1002, gnl|fr1|chrUn (74251583-74251412) | |
| 819-1002, gnl|galGal2|chr10 (1054150-1053974) | |
| 819-1002, gnl|hg17|chr15 (70428473-70428649) | |
| 819-1002, gnl|Hg17|chr15 (70428656-70428473) | |
| 819-1002, gnl|loxAfr1|scaffold_94576 (5113-4937) | |
| 819-1002, gnl|mm7|chr9 (59588007-59587831) | |
| 819-1002, gnl|Mm7|chr9 (59587822-59588005) | |
| 819-1002, gnl|monDom2|scaffold_14 (16791649-16791473) | |
| 819-1002, gnl|panTro1|chr16_random (19765689-19765513) | |
| 819-1002, gnl|rheMac2|chr7 (50995840-50996016) | |
| 819-1002, gnl|rn3|chr8 (63403117-63402941) | |
| 819-1002, gnl|tetNig1|chrUn_random (2820186-2820362) | |
| 1160-1346, gnl|bosTau2|chr10 (10733061-10732875) | |
| 1160-1346, gnl|canFam2|chr30 (38837461-38837671) | |
| 1160-1346, gnl|danRer3|chr25 (7103331-7103151) | |
| 1160-1346, gnl|dasNov1|scaffold_38394 (10632-10452) | |
| 1160-1346, gnl|echTel1|scaffold_218993 (992-767) | |
| 1160-1346, gnl|fr1|chrUn (74253207-74252977) | |
| 1160-1346, gnl|galGal2|chr10 (1055410-1055227) | |
| 1160-1346, gnl|hg17|chr15 (70425920-70426143) | |
| 1160-1346, gnl|Hg17|chr15 (70426107-70425921) | |
| 1160-1346, gnl|loxAfr1|scaffold_55632 (29157-28940) | |
| 1160-1346, gnl|mm7|chr9 (59589981-59589758) | |
| 1160-1346, gnl|Mm7|chr9 (59589792-59589978) | |
| 1160-1346, gnl|monDom2|scaffold_14 (16795146-16794938) | |
| 1160-1346, gnl|oryCun1|scaffold_192471 (12043-11836) | |
| 1160-1346, gnl|panTro1|chr16_random (19768245-19768022) | |
| 1160-1346, gnl|rheMac2|chr7 (50992989-50993212) | |
| 1160-1346, gnl|rn3|chr8 (63405270-63405048) | |
| 1160-1346, gnl|tetNig1|chrUn_random (2818890-2819057) | |
| 1540-1757, gnl|bosTau2|chr10 (10730603-10730371) | |
| 1540-1757, gnl|Hg17|chr15 (70423537-70423297) | |
| 1540-1757, gnl|Mm7|chr9 (59591746-59592024) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-260, gnl|bosTau2|chr10 (10761911-10761654) | |
| 3-260, gnl|canFam2|chr30 (38860731-38861125) | |
| 3-260, gnl|echTel1|scaffold_314079 (31764-32173) | |
| 3-260, gnl|hg17|chr15 (70455043-70455467) | |
| 3-260, gnl|Hg17|chr15 (70455379-70455123) | |
| 3-260, gnl|mm7|chr9 (59566975-59566552) | |
| 3-260, gnl|Mm7|chr9 (59566638-59566895) | |
| 3-260, gnl|oryCun1|scaffold_160527 (3897-4323) | |
| 3-260, gnl|panTro1|chr16 (71095836-71096260) | |
| 3-260, gnl|rheMac2|chr7 (51024852-51025275) | |
| 3-260, gnl|rn3|chr8 (63382628-63382211) | |
| 474-586, gnl|bosTau2|chr10 (10737807-10737695) | |
| 474-586, gnl|canFam2|chr30 (38842143-38842266) | |
| 474-586, gnl|danRer3|chr25 (7095224-7095101) | |
| 474-586, gnl|echTel1|scaffold_308039 (821-698) | |
| 474-586, gnl|fr1|chrUn (74250927-74250819) | |
| 474-586, gnl|galGal2|chr10 (1052611-1052504) | |
| 474-586, gnl|hg17|chr15 (70432445-70432568) | |
| 474-586, gnl|Hg17|chr15 (70432574-70432462) | |
| 474-586, gnl|loxAfr1|scaffold_94576 (2432-2309) | |
| 474-586, gnl|mm7|chr9 (59584345-59584222) | |
| 474-586, gnl|Mm7|chr9 (59584214-59584326) | |
| 474-586, gnl|monDom2|scaffold_14 (16789398-16789291) | |
| 474-586, gnl|oryCun1|scaffold_192471 (8364-8241) | |
| 474-586, gnl|panTro1|chr16_random (19761699-19761598) | |
| 474-586, gnl|rheMac2|chr7 (50999907-51000030) | |
| 474-586, gnl|rn3|chr8 (63399640-63399524) | |
| 474-586, gnl|tetNig1|chrUn_random (2820824-2820932) | |
| 819-1002, gnl|bosTau2|chr10 (10735204-10735021) | |
| 819-1002, gnl|canFam2|chr30 (38839767-38839943) | |
| 819-1002, gnl|danRer3|chr25 (7099124-7098948) | |
| 819-1002, gnl|dasNov1|scaffold_38394 (7915-7739) | |
| 819-1002, gnl|echTel1|scaffold_225038 (9468-9636) | |
| 819-1002, gnl|fr1|chrUn (74251583-74251412) | |
| 819-1002, gnl|galGal2|chr10 (1054150-1053974) | |
| 819-1002, gnl|hg17|chr15 (70428473-70428649) | |
| 819-1002, gnl|Hg17|chr15 (70428656-70428473) | |
| 819-1002, gnl|loxAfr1|scaffold_94576 (5113-4937) | |
| 819-1002, gnl|mm7|chr9 (59588007-59587831) | |
| 819-1002, gnl|Mm7|chr9 (59587822-59588005) | |
| 819-1002, gnl|monDom2|scaffold_14 (16791649-16791473) | |
| 819-1002, gnl|panTro1|chr16_random (19765689-19765513) | |
| 819-1002, gnl|rheMac2|chr7 (50995840-50996016) | |
| 819-1002, gnl|rn3|chr8 (63403117-63402941) | |
| 819-1002, gnl|tetNig1|chrUn_random (2820186-2820362) | |
| 1160-1346, gnl|bosTau2|chr10 (10733061-10732875) | |
| 1160-1346, gnl|canFam2|chr30 (38837461-38837671) | |
| 1160-1346, gnl|danRer3|chr25 (7103331-7103151) | |
| 1160-1346, gnl|dasNov1|scaffold_38394 (10632-10452) | |
| 1160-1346, gnl|echTel1|scaffold_218993 (992-767) | |
| 1160-1346, gnl|fr1|chrUn (74253207-74252977) | |
| 1160-1346, gnl|galGal2|chr10 (1055410-1055227) | |
| 1160-1346, gnl|hg17|chr15 (70425920-70426143) | |
| 1160-1346, gnl|Hg17|chr15 (70426107-70425921) | |
| 1160-1346, gnl|loxAfr1|scaffold_55632 (29157-28940) | |
| 1160-1346, gnl|mm7|chr9 (59589981-59589758) | |
| 1160-1346, gnl|Mm7|chr9 (59589792-59589978) | |
| 1160-1346, gnl|monDom2|scaffold_14 (16795146-16794938) | |
| 1160-1346, gnl|oryCun1|scaffold_192471 (12043-11836) | |
| 1160-1346, gnl|panTro1|chr16_random (19768245-19768022) | |
| 1160-1346, gnl|rheMac2|chr7 (50992989-50993212) | |
| 1160-1346, gnl|rn3|chr8 (63405270-63405048) | |
| 1160-1346, gnl|tetNig1|chrUn_random (2818890-2819057) | |
| 1540-1757, gnl|bosTau2|chr10 (10730603-10730371) | |
| 1540-1757, gnl|Hg17|chr15 (70423537-70423297) | |
| 1540-1757, gnl|Mm7|chr9 (59591746-59592024) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| ute (0.796707) | |
| cov (0.660764) | |
| fbs (0.526039) | |
| cty (0.5204) | |
| nje (0.49776) | |
| nca (0.410621) | |
| nbm (0.397298) | |
| elu (0.385356) | |
| cly (0.361925) | |
| clu (0.358938) | |
| ill (0.351185) | |
| ton (0.351) | |
| nco (0.323468) | |
| cag (0.302389) | |
| pla (0.267344) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nep (0.183925) | |
| cki (0.165235) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.796707) | |
| cov (0.660764) | |
| fbs (0.526039) | |
| cty (0.5204) | |
| nje (0.49776) | |
| nca (0.410621) | |
| nbm (0.397298) | |
| elu (0.385356) | |
| cly (0.361925) | |
| clu (0.358938) | |
| ill (0.351185) | |
| ton (0.351) | |
| nco (0.323468) | |
| cag (0.302389) | |
| pla (0.267344) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nep (0.183925) | |
| cki (0.165235) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) |