Ss1.1-Utr1-UTR010010D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGACTCCATACAATTGAGTCTTCCAGCCCCAGGGCAGTTTCTTATACTTGGGGTTCTGA ATGAATTTATTATGAAAAACCCTAGTTTGGAAAATAAAAAAGACCAAAGAGACCTCCAGG ATGTGACTCATAAAATAGTGGATGCAATTGGGGCAATTGCTGGTTCTTCTTTGGAGCAGA CTACATGGCTGCGACGAAATCTTGAAGTTAAGCCTTCTCCCAAAATAATGGTAGATGGGT CCAATTTGGAATCCGATGTTGAAGATATGCTGTCACCTGCCGTGGAGACCTCAAACATAA CCCCTTCTGTATACAGTGTCCATGCGCTGACATTACTCTCTGAGGTTTTGGCTCATCTTT TGGATATGGTTTTCTATAGCGATGAAAAAGAACGGGTTATTCCTTTACTTGTAAATATTA TGCATTATGTTGTGCCCTACCTCCGAAATCACAGTGCCCATAATGCCCCTAGTTACCGAG CCTGCGTCCAGCTGCTTAGCAGTCTTAGTGGGTATCAGTACACGCGGAGAGCTTGGAAAA AAGAAGCCTTTGATCTCTTTATGGATCCCAGTTTCTTTCAGATGGATGCCTCTTGTGTCA ATCATTGGAGAGCCATCATGGACAATCTGATGACACATGATAAGACAACGTTTAGAGATT TGATGACTCGTGTAGCTGTGGCTCAAAGCAGTTCACTTAATCTCTTTGCAAATCGTGATG TGGAGCTAGAGCAGAGAGCCATGCTTCTCAAAAGATTGGCATTTGCTATTTTCAGCAGTG AAATTGACCAGTATCAGAAATATCTTCCAGATATACAAGAGAGATTGGTTGAGAGTCTTC GCTTGCCCCAGGTGCCAACCCTTCACTCTCAAGTGTTCCTGTTTTTCAGAGTGTTACTTT TAAGAATGTCTCCACAACATCTTACCTCGCTCTGGCCCACCATGATTACAGAACTGGTAC AGGTATTTTTACTGATGGAGCAAGAACTCACTGCTGATGAAGATATTTCACGGACTTCAG GCCCCTCTGTGGCCGGTCTGGAGACGACCTACACAGGAGGTAATGGCTTTTCTACTTCAT ATAACAGCCAGCGCTGGTTAAACCTCTATCTCTCTGCTTGCAAGTTTTTGGATTTGGCTT TGGCGTTACCCTCTGAAAATCTTCCTCAGTTTCAGATGTACCGATGGGCCTTTATTCCAG AAGCCTCAGATGATTCAGGTTTGGAAGTCAGAAGGCAGGGCATACATCAGCGAGAATTTA AACCTTACGTAGTACGACTCGCAAAACTTCTTCGGAAAAGGGCAAAGAAAAATCCAGAGG AGGACACGTCTGGGCGAGCACTGGGCTGGGAGCCGGGGCACCTGCTGCTCTCCGTGGGCA CAGTGCGCAGCCTCGCACAGCTCCTGCCCTTCTTCAGTGTGCTCAGCCAAGTCTTCAACA GCAAGGTCACCAGCCGCTGTGCCGGACACTCAGGGAGCCCCGTCCTCTACTCAAACACCT TCCCTGGCAAGGACACAAAGCTGGAAAACCACAAACCGTTTTCCAGCAAAGCCAGGCAAA AAATAGAAGAGATGGTAGAAAAAGATTTTCTGGAAGGGGTGATAAAAACTTGAGCACCAC AAGTGGTTCCATTTAGTGTAAATGTAATTATTTAAAACCAACAAACATTGCTCTGAGTTG TATAGTTTCTTTTTTTGTATGTAACAAAACACGTTTCAGGTTGTATTTAATTTAAATATT TGTAAATAAGAACAACTGTCTTGAATGTGGCCTGAATCAAGTTTAAATATTGTAGGCTCA TATTGATTATGATGCCTAAGAGATCTATATATACATATATAGTGCATTAGAGTCCATTGT TTTATTGTCATGAGTTGTCTTAAACCTGCCAAATACACACTGCAAATTTTTTTCTATTGG TTTCAGGCTTGTTTAATTTAGATGGGCTGGGGATTCTTTTCTTTCCCTTATTAACCCCAT TCTCACATTGCAATGGCACCACTTCTCTGTCAGAGGCCCGGTAATGTACCACAGCCAGTT TCTCCCACATACCTACTAAGAGGAGTAAATAGTAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGACTCCATACAATTGAGTCTTCCAGCCCCAGGGCAGTTTCTTATACTTGGGGTTCTGA ATGAATTTATTATGAAAAACCCTAGTTTGGAAAATAAAAAAGACCAAAGAGACCTCCAGG ATGTGACTCATAAAATAGTGGATGCAATTGGGGCAATTGCTGGTTCTTCTTTGGAGCAGA CTACATGGCTGCGACGAAATCTTGAAGTTAAGCCTTCTCCCAAAATAATGGTAGATGGGT CCAATTTGGAATCCGATGTTGAAGATATGCTGTCACCTGCCGTGGAGACCTCAAACATAA CCCCTTCTGTATACAGTGTCCATGCGCTGACATTACTCTCTGAGGTTTTGGCTCATCTTT TGGATATGGTTTTCTATAGCGATGAAAAAGAACGGGTTATTCCTTTACTTGTAAATATTA TGCATTATGTTGTGCCCTACCTCCGAAATCACAGTGCCCATAATGCCCCTAGTTACCGAG CCTGCGTCCAGCTGCTTAGCAGTCTTAGTGGGTATCAGTACACGCGGAGAGCTTGGAAAA AAGAAGCCTTTGATCTCTTTATGGATCCCAGTTTCTTTCAGATGGATGCCTCTTGTGTCA ATCATTGGAGAGCCATCATGGACAATCTGATGACACATGATAAGACAACGTTTAGAGATT TGATGACTCGTGTAGCTGTGGCTCAAAGCAGTTCACTTAATCTCTTTGCAAATCGTGATG TGGAGCTAGAGCAGAGAGCCATGCTTCTCAAAAGATTGGCATTTGCTATTTTCAGCAGTG AAATTGACCAGTATCAGAAATATCTTCCAGATATACAAGAGAGATTGGTTGAGAGTCTTC GCTTGCCCCAGGTGCCAACCCTTCACTCTCAAGTGTTCCTGTTTTTCAGAGTGTTACTTT TAAGAATGTCTCCACAACATCTTACCTCGCTCTGGCCCACCATGATTACAGAACTGGTAC AGGTATTTTTACTGATGGAGCAAGAACTCACTGCTGATGAAGATATTTCACGGACTTCAG GCCCCTCTGTGGCCGGTCTGGAGACGACCTACACAGGAGGTAATGGCTTTTCTACTTCAT ATAACAGCCAGCGCTGGTTAAACCTCTATCTCTCTGCTTGCAAGTTTTTGGATTTGGCTT TGGCGTTACCCTCTGAAAATCTTCCTCAGTTTCAGATGTACCGATGGGCCTTTATTCCAG AAGCCTCAGATGATTCAGGTTTGGAAGTCAGAAGGCAGGGCATACATCAGCGAGAATTTA AACCTTACGTAGTACGACTCGCAAAACTTCTTCGGAAAAGGGCAAAGAAAAATCCAGAGG AGGACACGTCTGGGCGAGCACTGGGCTGGGAGCCGGGGCACCTGCTGCTCTCCGTGGGCA CAGTGCGCAGCCTCGCACAGCTCCTGCCCTTCTTCAGTGTGCTCAGCCAAGTCTTCAACA GCAAGGTCACCAGCCGCTGTGCCGGACACTCAGGGAGCCCCGTCCTCTACTCAAACACCT TCCCTGGCAAGGACACAAAGCTGGAAAACCACAAACCGTTTTCCAGCAAAGCCAGGCAAA AAATAGAAGAGATGGTAGAAAAAGATTTTCTGGAAGGGGTGATAAAAACTTGAGCACCAC AAGTGGTTCCATTTAGTGTAAATGTAATTATTTAAAACCAACAAACATTGCTCTGAGTTG TATAGTTTCTTTTTTTGTATGTAACAAAACACGTTTCAGGTTGTATTTAATTTAAATATT TGTAAATAAGAACAACTGTCTTGAATGTGGCCTGAATCAAGTTTAAATATTGTAGGCTCA TATTGATTATGATGCCTAAGAGATCTATATATACATATATAGTGCATTAGAGTCCATTGT TTTATTGTCATGAGTTGTCTTAAACCTGCCAAATACACACTGCAAATTTTTTTCTATTGG TTTCAGGCTTGTTTAATTTAGATGGGCTGGGGATTCTTTTCTTTCCCTTATTAACCCCAT TCTCACATTGCAATGGCACCACTTCTCTGTCAGAGGCCCGGTAATGTACCACAGCCAGTT TCTCCCACATACCTACTAAGAGGAGTAAATAGTAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1465-1584, - strand, RNAz p=0.933493 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1465-1584, - strand, RNAz p=0.933493 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 114-268, gnl|bosTau2|chr9 (10060788-10060942) | |
| 114-268, gnl|canFam2|chr12 (46573469-46573612) | |
| 114-268, gnl|danRer3|chr16 (44194787-44194648) | |
| 114-268, gnl|dasNov1|scaffold_63932 (13778-13641) | |
| 114-268, gnl|echTel1|scaffold_294337 (5503-5382) | |
| 114-268, gnl|fr1|chrUn (112651817-112651957) | |
| 114-268, gnl|galGal2|chr3 (76284129-76283986) | |
| 114-268, gnl|hg17|chr6 (83918303-83918446) | |
| 114-268, gnl|Hg17|chr6 (83918315-83918469) | |
| 114-268, gnl|loxAfr1|scaffold_2725 (110788-110645) | |
| 114-268, gnl|mm7|chr9 (86639452-86639595) | |
| 114-268, gnl|Mm7|chr9 (86639464-86639618) | |
| 114-268, gnl|monDom2|scaffold_0 (147001977-147001834) | |
| 114-268, gnl|oryCun1|scaffold_197966 (2702-2833) | |
| 114-268, gnl|panTro1|chr5 (85553995-85554138) | |
| 114-268, gnl|rheMac2|chr4 (79180704-79180841) | |
| 114-268, gnl|rn3|chr8 (91807394-91807537) | |
| 114-268, gnl|tetNig1|chr8 (1668509-1668366) | |
| 114-268, gnl|xenTro1|scaffold_497 (149806-149679) | |
| 449-604, gnl|bosTau2|chr9 (10063047-10063202) | |
| 449-604, gnl|Hg17|chr6 (83920326-83920481) | |
| 449-604, gnl|Mm7|chr9 (86646084-86646239) | |
| 667-819, gnl|bosTau2|chr9 (10064888-10065040) | |
| 667-819, gnl|Hg17|chr6 (83922389-83922541) | |
| 667-819, gnl|Mm7|chr9 (86648596-86648748) | |
| 1012-1180, gnl|bosTau2|chr9 (10068162-10068330) | |
| 1012-1180, gnl|Hg17|chr6 (83926233-83926401) | |
| 1012-1180, gnl|Mm7|chr9 (86653357-86653525) | |
| 1306-2069, gnl|bosTau2|chr9 (10073476-10074245) | |
| 1306-2069, gnl|Hg17|chr6 (83934298-83935069) | |
| 1306-2069, gnl|Mm7|chr9 (86657369-86658126) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-268, gnl|bosTau2|chr9 (10060788-10060942) | |
| 114-268, gnl|canFam2|chr12 (46573469-46573612) | |
| 114-268, gnl|danRer3|chr16 (44194787-44194648) | |
| 114-268, gnl|dasNov1|scaffold_63932 (13778-13641) | |
| 114-268, gnl|echTel1|scaffold_294337 (5503-5382) | |
| 114-268, gnl|fr1|chrUn (112651817-112651957) | |
| 114-268, gnl|galGal2|chr3 (76284129-76283986) | |
| 114-268, gnl|hg17|chr6 (83918303-83918446) | |
| 114-268, gnl|Hg17|chr6 (83918315-83918469) | |
| 114-268, gnl|loxAfr1|scaffold_2725 (110788-110645) | |
| 114-268, gnl|mm7|chr9 (86639452-86639595) | |
| 114-268, gnl|Mm7|chr9 (86639464-86639618) | |
| 114-268, gnl|monDom2|scaffold_0 (147001977-147001834) | |
| 114-268, gnl|oryCun1|scaffold_197966 (2702-2833) | |
| 114-268, gnl|panTro1|chr5 (85553995-85554138) | |
| 114-268, gnl|rheMac2|chr4 (79180704-79180841) | |
| 114-268, gnl|rn3|chr8 (91807394-91807537) | |
| 114-268, gnl|tetNig1|chr8 (1668509-1668366) | |
| 114-268, gnl|xenTro1|scaffold_497 (149806-149679) | |
| 449-604, gnl|bosTau2|chr9 (10063047-10063202) | |
| 449-604, gnl|Hg17|chr6 (83920326-83920481) | |
| 449-604, gnl|Mm7|chr9 (86646084-86646239) | |
| 667-819, gnl|bosTau2|chr9 (10064888-10065040) | |
| 667-819, gnl|Hg17|chr6 (83922389-83922541) | |
| 667-819, gnl|Mm7|chr9 (86648596-86648748) | |
| 1012-1180, gnl|bosTau2|chr9 (10068162-10068330) | |
| 1012-1180, gnl|Hg17|chr6 (83926233-83926401) | |
| 1012-1180, gnl|Mm7|chr9 (86653357-86653525) | |
| 1306-2069, gnl|bosTau2|chr9 (10073476-10074245) | |
| 1306-2069, gnl|Hg17|chr6 (83934298-83935069) | |
| 1306-2069, gnl|Mm7|chr9 (86657369-86658126) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ece (0.229305) | |
| tes (0.207814) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| tes (0.207814) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |