Ss1.1-Utr1-UTR010011G01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAATGGCGACCTCAACCAGTTCCTCAGTGCCCACCAGCTAGAGGACAAGGCGGCGGAG GGGGCCGGGGATGGGGAGGCAGCCCAGGGGCCCACCATCAGCTATCCCATGCTGCTGCAT GTGGCGGCCCAGATCGCCTCGGGCATGCGCTATCTGGCCACACTTAACTTTGTGCATCGG GACCTGGCCACAAGGAACTGCCTGGTCGGGGAAAATTTCACCATCAAAATTGCCGACTTT GGCATGAGCCGGAACCTCTATGCTGGGGATTATTACCGCGTGCAGGGCCGGGCGGTGCTG CCCATCCGGTGGATGGCCTGGGAGTGTATCCTCATGGGGAAGTTCACGACCGCAAGTGAC GTGTGGGCCTTTGGGGTGACCCTGTGGGAGGTGCTGATGCTCTGCAGGGCCCAGCCCTTT GGGCAGCTCACGGATGAGCAAGTGATCGAGAACGCGGGGGAGTTCTTCCGGGATCAGGGC CGGCAGGTGTACCTGTCCCGGCCCCCAGCCTGCCCCCTGGGCCTGTATGAGCTGATGCTT CGGTGCTGGAGCCGGGAGCCTGAGCAGCGACCACCCTTTTCCCAGCTGCATCGGTTCCTG GCAGAAGATGCGCTCAACACAGTGTGAATCCCAACACCCAGCTGTCCCTCCCGCAGGGAG GATTCAGGGGAGGCCAGCGGCACTAGACAAGAGGACCTAACAGCACCTCCACTCCATTCC CCTCCCGACCGCCCTTCACCTCTGGGAGAGGCAGTGTGGCTGCAGGTGGGCTGGGCCTGC CAGGGAGCCGACGCCCTCCCTTCCCCGGACATGCTCTCATGCCCACTTCCTGCTTCTTTC CTAGAAGTCCCTGCCGCCCACCCAGCTGGCCCTGTGGATGGGATCCTCTCTGACCTCCTC TAGCCATCCCTTGGGGGAGGGGAGGGGAAAATATAGGGCAGACACTGGACCTGGCCCACA GGAGCACCTGGGCCCCACTGGACAACACTGGTTCCTGGAGAAAAGGCTGTGGCCACCCCC ACCCCCCACCCAGCCTCTCTGTCTCCGTCACACACTGGACCCCACTGGCTGAGAATTTGG GGAGTGAGGAGGACAAGAATGGGAGAAAGGGGTTCCCTTGTGCCTCCTCCTGGAACTGCC CTCAGCTTTGGCCTCTCTCTACTTCATCCTCTGAAAACACTGGACCTGGGGGTGATCCCT GCCCCCCACCCCCCAGCCTCCCCACTTCCCACCTGCCGTGTTGTAGCTAGAACTTCTCTA AGCCTGTATGTTTATGTGGAATAAGTATTGGGATTAGGGGGAAAGACAGAGCAACAGCCT GTGGCCCTGGGGTTGGAAATCTCTATCATAGCTGCCACACTGGTTTTTCTATAATCACTT GGGGTTTGTACATTTTTTTGGGGGGAGAGACACAGATTTTTACACTAATATATGGATCTA GCTCAATGCTATTTTAATCCCCTGCACTAGGCAGGTAATAATAAAGGTTGAGTTTTCCAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAATGGCGACCTCAACCAGTTCCTCAGTGCCCACCAGCTAGAGGACAAGGCGGCGGAG GGGGCCGGGGATGGGGAGGCAGCCCAGGGGCCCACCATCAGCTATCCCATGCTGCTGCAT GTGGCGGCCCAGATCGCCTCGGGCATGCGCTATCTGGCCACACTTAACTTTGTGCATCGG GACCTGGCCACAAGGAACTGCCTGGTCGGGGAAAATTTCACCATCAAAATTGCCGACTTT GGCATGAGCCGGAACCTCTATGCTGGGGATTATTACCGCGTGCAGGGCCGGGCGGTGCTG CCCATCCGGTGGATGGCCTGGGAGTGTATCCTCATGGGGAAGTTCACGACCGCAAGTGAC GTGTGGGCCTTTGGGGTGACCCTGTGGGAGGTGCTGATGCTCTGCAGGGCCCAGCCCTTT GGGCAGCTCACGGATGAGCAAGTGATCGAGAACGCGGGGGAGTTCTTCCGGGATCAGGGC CGGCAGGTGTACCTGTCCCGGCCCCCAGCCTGCCCCCTGGGCCTGTATGAGCTGATGCTT CGGTGCTGGAGCCGGGAGCCTGAGCAGCGACCACCCTTTTCCCAGCTGCATCGGTTCCTG GCAGAAGATGCGCTCAACACAGTGTGAATCCCAACACCCAGCTGTCCCTCCCGCAGGGAG GATTCAGGGGAGGCCAGCGGCACTAGACAAGAGGACCTAACAGCACCTCCACTCCATTCC CCTCCCGACCGCCCTTCACCTCTGGGAGAGGCAGTGTGGCTGCAGGTGGGCTGGGCCTGC CAGGGAGCCGACGCCCTCCCTTCCCCGGACATGCTCTCATGCCCACTTCCTGCTTCTTTC CTAGAAGTCCCTGCCGCCCACCCAGCTGGCCCTGTGGATGGGATCCTCTCTGACCTCCTC TAGCCATCCCTTGGGGGAGGGGAGGGGAAAATATAGGGCAGACACTGGACCTGGCCCACA GGAGCACCTGGGCCCCACTGGACAACACTGGTTCCTGGAGAAAAGGCTGTGGCCACCCCC ACCCCCCACCCAGCCTCTCTGTCTCCGTCACACACTGGACCCCACTGGCTGAGAATTTGG GGAGTGAGGAGGACAAGAATGGGAGAAAGGGGTTCCCTTGTGCCTCCTCCTGGAACTGCC CTCAGCTTTGGCCTCTCTCTACTTCATCCTCTGAAAACACTGGACCTGGGGGTGATCCCT GCCCCCCACCCCCCAGCCTCCCCACTTCCCACCTGCCGTGTTGTAGCTAGAACTTCTCTA AGCCTGTATGTTTATGTGGAATAAGTATTGGGATTAGGGGGAAAGACAGAGCAACAGCCT GTGGCCCTGGGGTTGGAAATCTCTATCATAGCTGCCACACTGGTTTTTCTATAATCACTT GGGGTTTGTACATTTTTTTGGGGGGAGAGACACAGATTTTTACACTAATATATGGATCTA GCTCAATGCTATTTTAATCCCCTGCACTAGGCAGGTAATAATAAAGGTTGAGTTTTCCAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 101-220, - strand, RNAz p=0.640638 | |
| 832-1069, - strand, RNAz p=0.846914 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 101-220, - strand, RNAz p=0.640638 | |
| 832-1069, - strand, RNAz p=0.846914 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 98-345, gnl|bosTau2|chr3 (7504223-7504470) | |
| 98-345, gnl|Hg17|chr1 (159477580-159477827) | |
| 98-345, gnl|Mm7|chr1 (169961086-169960839) | |
| 99-340, gnl|bosTau2|chr23 (20679126-20678885) | |
| 99-340, gnl|Hg17|chr6 (30973826-30974067) | |
| 99-340, gnl|Mm7|chr17 (33784651-33784410) | |
| 101-281, gnl|bosTau2|chr21 (13987274-13987095) | |
| 101-281, gnl|canFam2|chr3 (54046926-54047178) | |
| 101-281, gnl|danRer3|chr7 (5597183-5596933) | |
| 101-281, gnl|dasNov1|scaffold_15699 (86104-86345) | |
| 101-281, gnl|echTel1|scaffold_316722 (83598-83850) | |
| 101-281, gnl|fr1|chrUn (108905321-108905570) | |
| 101-281, gnl|galGal2|chr10 (13934982-13934732) | |
| 101-281, gnl|hg17|chr15 (86273421-86273673) | |
| 101-281, gnl|Hg17|chr15 (86273603-86273424) | |
| 101-281, gnl|loxAfr1|scaffold_3485 (11526-11274) | |
| 101-281, gnl|mm7|chr7 (74107676-74107928) | |
| 101-281, gnl|Mm7|chr7 (74107858-74107679) | |
| 101-281, gnl|monDom2|scaffold_45 (12716262-12716010) | |
| 101-281, gnl|oryCun1|scaffold_214357 (168469-168228) | |
| 101-281, gnl|panTro1|chr16 (87118772-87119024) | |
| 101-281, gnl|rheMac2|chr7 (67542906-67543158) | |
| 101-281, gnl|rn3|chr1 (134056782-134057034) | |
| 101-281, gnl|tetNig1|chrUn_random (136695549-136695300) | |
| 101-281, gnl|xenTro1|scaffold_71 (500517-500265) | |
| 483-1501, gnl|bosTau2|chr23 (20678084-20677087) | |
| 483-1501, gnl|Hg17|chr6 (30974908-30975911) | |
| 483-1501, gnl|Mm7|chr17 (33783241-33782286) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-345, gnl|bosTau2|chr3 (7504223-7504470) | |
| 98-345, gnl|Hg17|chr1 (159477580-159477827) | |
| 98-345, gnl|Mm7|chr1 (169961086-169960839) | |
| 99-340, gnl|bosTau2|chr23 (20679126-20678885) | |
| 99-340, gnl|Hg17|chr6 (30973826-30974067) | |
| 99-340, gnl|Mm7|chr17 (33784651-33784410) | |
| 101-281, gnl|bosTau2|chr21 (13987274-13987095) | |
| 101-281, gnl|canFam2|chr3 (54046926-54047178) | |
| 101-281, gnl|danRer3|chr7 (5597183-5596933) | |
| 101-281, gnl|dasNov1|scaffold_15699 (86104-86345) | |
| 101-281, gnl|echTel1|scaffold_316722 (83598-83850) | |
| 101-281, gnl|fr1|chrUn (108905321-108905570) | |
| 101-281, gnl|galGal2|chr10 (13934982-13934732) | |
| 101-281, gnl|hg17|chr15 (86273421-86273673) | |
| 101-281, gnl|Hg17|chr15 (86273603-86273424) | |
| 101-281, gnl|loxAfr1|scaffold_3485 (11526-11274) | |
| 101-281, gnl|mm7|chr7 (74107676-74107928) | |
| 101-281, gnl|Mm7|chr7 (74107858-74107679) | |
| 101-281, gnl|monDom2|scaffold_45 (12716262-12716010) | |
| 101-281, gnl|oryCun1|scaffold_214357 (168469-168228) | |
| 101-281, gnl|panTro1|chr16 (87118772-87119024) | |
| 101-281, gnl|rheMac2|chr7 (67542906-67543158) | |
| 101-281, gnl|rn3|chr1 (134056782-134057034) | |
| 101-281, gnl|tetNig1|chrUn_random (136695549-136695300) | |
| 101-281, gnl|xenTro1|scaffold_71 (500517-500265) | |
| 483-1501, gnl|bosTau2|chr23 (20678084-20677087) | |
| 483-1501, gnl|Hg17|chr6 (30974908-30975911) | |
| 483-1501, gnl|Mm7|chr17 (33783241-33782286) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| fhi (0.508733) | |
| amn (0.417711) | |
| cty (0.31224) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| cki (0.165235) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ecc (0.115035) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.508733) | |
| amn (0.417711) | |
| cty (0.31224) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| cki (0.165235) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ecc (0.115035) |