Non-Coding RNA Search

Ss1.1-Utr1-UTR010011G06.5

Sequence:


               
               GCTGTCGCCACCCAGAGGACTTCGGTGGGGGACTCTCGGGGCAGCCCCGCGGCCCGCAGC
GGTTTTCTCCGGCCTCGCTCCTAGGCAGCACTTCCCGGCTCTCGGGCCGCACTGTAGGCG
CGCGTGCAAGTCGGCTCCGCGGCTGCCTTGGGGCTTGGGCCCAACTGCAGCCTCGTCCCC
CGCCGCGGGCTCCGAGGGGCCGCGCGATGCAGCCACCCGGCCCGCCCCCGGCCTATTCCC
CCTCTAACGGGGACTTCACCTTTGTCACCTCAGCAGACGCAGAAGATCTCAGTGGTTCAA
TAGCATCCCCAGATGTCAAGTTAAACCTTGGTGGAGATTTTGTGAAAGAATCAACAGCTA
CTACATTTCTGAGACAAAGAGGATATGGCTGGCTTTTGGAAGTTGAAGATGATGACCCTG
AAGATAACAAGCCACTCTTGGAAGAATTGGATATCGATCTAAAGGATATTTACTACAAAA
TCCGATGTGTTTTGATGCCAATGCCATCACTTGGTTTTAATAGACAAGTGGTGAGAGACA
ATCCTGACTTTTGGGGTCCCCTGGCTGTTGTTCTTTTCTTTTCCATGATATCTTTATATG
GACAGTTTAGGGTGGTCTCTTGGATTATCACCATTTGGATATTTGGTTCGTTAACAATTT
TCTTACTGGCCAGAGTTCTTGGTGGAGAAGTTGCATATGGTCAAGTCCTTGGTGTTATAG
GATATTCATTACTTCCTCTAATTGTAATAGCCCCTATACTTTTGGTGGTTGGATCATTTG
AATTGGTGTCTACACTTATAAAACTGTTTGGTGTGTTTTGGGCTGCCTACAGTGCTGCTT
CATTGTTAGTGGGTGAAGAATTCAAGACCAAAAAGCCTCTCCTGATTTATCCAATCTTTT
TATTATACATTTATTTTTTGTCCTTATATACTGGGGTGTGATCTAAGTCATATATGAATG
GAAAAAGACAATGTTACATTTTTGTGTAGGCTGGGATTCTTGCTTGAGGAAATTGAAGAA
AACCTGTTGCTGGTAAAATTTTACATGTTCCAGATGTAAAAGCAGTTTAAGGTCTTTTTA
AAACAATATTTTTTTGTATTTAATTAAGTAGTTGCAGTTATCTGGATATTTTTTGGTCAG
AATTCTAAATTCTGTTTGATTCTTCATATTCCAGTGAATAAAATATGAAAGCATTATGTT
TTTAAGATTGTGTCAATATTCACATAAAAACTTGTGCCAAAAGCACCTGAAATGATAATT
ATGTTTCACTCGAAGGGTAAATGTGACAACATTCTGATAATCTAAAAGTGCAATTTCTTT
TTCTTTAAAGGGTTTTCTCCTGCATTGCAGATCCTGTAGATATATATTTATATTTATACA
TATATATTTATGAAGTAGTTCTTATTATTCACAAAATATATTTCTGAATAGCCTAAAAAT
TAAGATATTTTAAATCTGATGCTTAAACTTTCTTTAATTTGGCCATTAATCTTTGTTTTT
AAATTATATATAATTTTTAAAATCTCAAATGTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTCGCCACCCAGAGGACTTCGGTGGGGGACTCTCGGGGCAGCCCCGCGGCCCGCAGC
GGTTTTCTCCGGCCTCGCTCCTAGGCAGCACTTCCCGGCTCTCGGGCCGCACTGTAGGCG
CGCGTGCAAGTCGGCTCCGCGGCTGCCTTGGGGCTTGGGCCCAACTGCAGCCTCGTCCCC
CGCCGCGGGCTCCGAGGGGCCGCGCGATGCAGCCACCCGGCCCGCCCCCGGCCTATTCCC
CCTCTAACGGGGACTTCACCTTTGTCACCTCAGCAGACGCAGAAGATCTCAGTGGTTCAA
TAGCATCCCCAGATGTCAAGTTAAACCTTGGTGGAGATTTTGTGAAAGAATCAACAGCTA
CTACATTTCTGAGACAAAGAGGATATGGCTGGCTTTTGGAAGTTGAAGATGATGACCCTG
AAGATAACAAGCCACTCTTGGAAGAATTGGATATCGATCTAAAGGATATTTACTACAAAA
TCCGATGTGTTTTGATGCCAATGCCATCACTTGGTTTTAATAGACAAGTGGTGAGAGACA
ATCCTGACTTTTGGGGTCCCCTGGCTGTTGTTCTTTTCTTTTCCATGATATCTTTATATG
GACAGTTTAGGGTGGTCTCTTGGATTATCACCATTTGGATATTTGGTTCGTTAACAATTT
TCTTACTGGCCAGAGTTCTTGGTGGAGAAGTTGCATATGGTCAAGTCCTTGGTGTTATAG
GATATTCATTACTTCCTCTAATTGTAATAGCCCCTATACTTTTGGTGGTTGGATCATTTG
AATTGGTGTCTACACTTATAAAACTGTTTGGTGTGTTTTGGGCTGCCTACAGTGCTGCTT
CATTGTTAGTGGGTGAAGAATTCAAGACCAAAAAGCCTCTCCTGATTTATCCAATCTTTT
TATTATACATTTATTTTTTGTCCTTATATACTGGGGTGTGATCTAAGTCATATATGAATG
GAAAAAGACAATGTTACATTTTTGTGTAGGCTGGGATTCTTGCTTGAGGAAATTGAAGAA
AACCTGTTGCTGGTAAAATTTTACATGTTCCAGATGTAAAAGCAGTTTAAGGTCTTTTTA
AAACAATATTTTTTTGTATTTAATTAAGTAGTTGCAGTTATCTGGATATTTTTTGGTCAG
AATTCTAAATTCTGTTTGATTCTTCATATTCCAGTGAATAAAATATGAAAGCATTATGTT
TTTAAGATTGTGTCAATATTCACATAAAAACTTGTGCCAAAAGCACCTGAAATGATAATT
ATGTTTCACTCGAAGGGTAAATGTGACAACATTCTGATAATCTAAAAGTGCAATTTCTTT
TTCTTTAAAGGGTTTTCTCCTGCATTGCAGATCCTGTAGATATATATTTATATTTATACA
TATATATTTATGAAGTAGTTCTTATTATTCACAAAATATATTTCTGAATAGCCTAAAAAT
TAAGATATTTTAAATCTGATGCTTAAACTTTCTTTAATTTGGCCATTAATCTTTGTTTTT
AAATTATATATAATTTTTAAAATCTCAAATGTCCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9BSR8_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9BSR8_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               796-1520, gnl|bosTau2|chr11 (75418112-75417393)
               

               
               796-1520, gnl|Hg17|chr2 (32442202-32442913)
               

               
               796-1520, gnl|Mm7|chr17 (72789318-72790041)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               796-1520, gnl|bosTau2|chr11 (75418112-75417393)
               

               
               796-1520, gnl|Hg17|chr2 (32442202-32442913)
               

               
               796-1520, gnl|Mm7|chr17 (72789318-72790041)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               tes (1.03907)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               ret (0.3862)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               ssp (0.271039)
               

               
               tra (0.246184)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.03907)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               ret (0.3862)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               ssp (0.271039)
               

               
               tra (0.246184)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	796-1520, gnl\|bosTau2\|chr11 (75418112-75417393)
	796-1520, gnl\|Hg17\|chr2 (32442202-32442913)
	796-1520, gnl\|Mm7\|chr17 (72789318-72790041)

	tes (1.03907)
	pro (0.512033)
	mgp (0.461361)
	ret (0.3862)
	sme (0.305437)
	liv (0.292569)
	ssp (0.271039)
	tra (0.246184)
	cty (0.20816)
	fli (0.202881)
	fty (0.17584)
	ton (0.1755)
	sin (0.174948)
	mcp (0.170648)
	cag (0.151194)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	thg (0.126791)
	eep (0.122564)
	jca (0.11396)
	ldo (0.0970026)