Ss1.1-Utr1-UTR010011H03.5.5
|
ACAAAACCGGAGCCTCGGGCCGGGCCGCGTGAGGGAGGAGGGCTCATCATGCCTAGTGGC
GTATAAGAAGACCCCGCCACCGGTCCCTCCACGCACCACGTCAAAGCCGTTCATCTCCGT
CACGGTCCAGAGCAGTACCGAGTCTGCCCAGGACACCTATTTGGACAGCCAGGACCACAA
GAGTGAAGTGACGAGCCAATCCGGCCTGAGCAACTCATCGGACAGCCTAGACAGCAGTAC
CCGACCGCCCAGCGTGACACGGGGTGGAGTCACCCCAGCCCCTGAGGCCCCCGAGCCACC
CCCAAAACATGCAGCTCTGAAGAGCGAACAAGGGACGCTGACCAGCTCCGAATCCCACCC
TGAGGCCGTCCCCAAAAGGAAACTGTCATCTATAGGAATACAAGTTGACTGCATTCAGCC
AGTGCCAAAAGAGGAGCCCAGTCCCGCTACCAAATTCCAGTCCATCGGGGTTCAGGTAGA
GGACGACTGGCGAAGCAGCGCCCCCTCGCATAGCATGTCCTCCCGACGGGACACCGACTC
GGATACCCAGGATGCCAATGACTCAAGCTCTAAGTCATCTGAGAGGAGCCTCCCGGACTG
TACTCCACACCCCAACTCCATCAGCATCGATGCCGGCCCCCGGCAGGCCCCCAAGATTGC
CCAGATCAAGCGCAACCTCTCCTATGGAGACAACAGCGACCCTGCCCTAGAGGCATCCTC
GCTGCCCCCACCCGACCCCTGGCTGGAGACCTCCTCCAGCTCCCCAGCAGAGCCAGCGCA
GCCAGGGGCCTGCCGTCGAGATGGCTACTGGTTCTTGAAGCTTCTTCAAGCAGAGACGGA
GCGGCTGGAAGGCTGGTGCTGCCAGATGGACAAGGAGACCAAAGAGAACAACCTCTCTGA
AGAAGTCTTAGGAAAAGTCCTCAGTGCTGTGGGCAGTGCCCAGCTGCTGATGTCCCAGAA
ATTCCAGCAGTTCCGGGGCCTTTGTGAACAAAACTTGAACCCTGACGCCAACCCACGTCC
GACAGCCCAGGACCTGGCAGGGTTCTGGGACCTGCTGCAGCTGTCCATCGAGGACATCAG
CATGAAGTTTGATGAACTCTACCACCTCAAGGCCAACAGCTGGCAGCTGGTGGAGACCCC
CGAGAAGAGGAAGGAAGAGAAGAAACCACCCCCTCCGGTCCCAAAGAAGCCAGCCAAATC
CAAGCCGGCAGTGAGCCGCGACAAGGCCTCTGATGCTGGGGACAAGCAGCGTCAGGAGGC
CCGCAAGAGACTGCTGGCAGCCAAGCGGGCAGCTTCCGTGCGGCAGAACTCAGCCACAGA
GAGCGCAGACAGCATTGAGATTTATGTCCCCGAGGCCCAGACCCGGCTCTGAGACCAGAA
AGCAGGAAGCAGACAATTTTAAGGCATTTTAAAAAAAACCCACAAACTAAATGCAAATGG
AACAAAATTTTCTCAGCCTTTAGTATGGTTATTCTGTCTAGAGACCCTGAGCCAACTTTC
AAAATGATGCATACAAGGGCTCACGATTTGGCTTTTTTGGGTCCCTCCCAGCTTTAGGTT
ATGAAGACTTCACACAAATCAACAAAAACACAAAACTCTAAAACTTTTCTTCCTCTTGCT
GGCCGTGGTGGACTAGATAGATGGACTTCGGCAACTCCTCAGCCCAGCCTCCAGACTGCG
GTCTTTTTACTTGTTCTATCTAACGAGAACTTAAACTAGCTTGTTTACAAGATGACAACA
GCCCAAGGGCAGCCTTGGGCACCTGCCATGTCCTTCCTTCTCTCCCTGGCTATCCCGGCT
CTGACCTTGGAGTTTTCATTCTTACGTTTCTCTCTTTTCCCTTCAGAACAAAGCACGCAG
GGGTCACCATCCTGACTCTCGGCTTTCTGGTTCTCCGCCCTTTTGGTGGCTGAGCCCAGA
GGACAGAACGATGGACACGCGTCCCCTCCCCCACCAAGTGCTCACACACAGTCACACCCG
CGCGCACACGCAGATGTAGGTTCCTCCCACTGTGATCCGCCAGCCCTAGGCGGCGTCCGG
GGGTGACCCGCCTCTCTGAGGAGATGAGGAGGGTCGACGTCTTTGCGGGGAAATGAGATA
AAAACCGCAGTTACCACACTCCAGGCTCCCGCCTTTTTCTTCTCTCCAGCCCCTTCTTCC
TTCAGCAAAATATGACTCAGAGTGACTTGCAGGGGCCACTCGAGAGAGGGACCCCATTTC
CCAGGGGTGGTCTGTCCCTGGCCGAGCCTGTGTACAGTCCCGAGGGTGGGCGGCTGTGTC
TGTACGTATGTGTACATATGCACATAGACCTTAGAGTGTATATTTAACCAACGCCCATCT
GCTCACCCATGCCCACCAGCGCCGCCGCTGGCTCTCGGGGCACCTGGCAGGAGGCGGGGG
TGTGAATAGCATATATTTTTACATGTACTATATCTAGGTGTGTGTACAAGTGTGTGTAAA
AATATATACCTTGTGTGTAAGCAGCCTCCCCCCCCTTTTTTGGTCTCCCACCTGCCTCCC
CACCATGGGCCCATCTGCCCAGCCTCTGAGTTTTCTGTTCTCTTCTTTTACCCGAGTCAT
CCTTCTCTCTCCCCGAGCCCCACTCCCGGGGTGTCACGAGCCCTGAGCTGCAACGGCCTG
GGCCTGCAGGGCGAGGTAGGGGGCAGGGAGAGGGTGAGGCCCACCCGCAGCCAGCTCAGT
GCCCGAGGGCTGCTCTCTCCTGTGTCCACGACTAGGCACTGGACACGTCTCCGTGTCCGG
CACCTGCCACGGGGGCCCCGGATGAAGTGAGGGCCTGCTCTAGGGCCCATTCCAGCTTGG
CCACCGTCTGTGACCTTGGGCAAGTCACTTGACCTCTGTGTGCCTCAACTTCCTCCTCTG
TAAAATGGGGACAGTCCCCGCCCCTCCCTACCTCACAGGCATGTTGTGAGAATAAATGAG
GTAACGTGTAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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ACAAAACCGGAGCCTCGGGCCGGGCCGCGTGAGGGAGGAGGGCTCATCATGCCTAGTGGC
GTATAAGAAGACCCCGCCACCGGTCCCTCCACGCACCACGTCAAAGCCGTTCATCTCCGT
CACGGTCCAGAGCAGTACCGAGTCTGCCCAGGACACCTATTTGGACAGCCAGGACCACAA
GAGTGAAGTGACGAGCCAATCCGGCCTGAGCAACTCATCGGACAGCCTAGACAGCAGTAC
CCGACCGCCCAGCGTGACACGGGGTGGAGTCACCCCAGCCCCTGAGGCCCCCGAGCCACC
CCCAAAACATGCAGCTCTGAAGAGCGAACAAGGGACGCTGACCAGCTCCGAATCCCACCC
TGAGGCCGTCCCCAAAAGGAAACTGTCATCTATAGGAATACAAGTTGACTGCATTCAGCC
AGTGCCAAAAGAGGAGCCCAGTCCCGCTACCAAATTCCAGTCCATCGGGGTTCAGGTAGA
GGACGACTGGCGAAGCAGCGCCCCCTCGCATAGCATGTCCTCCCGACGGGACACCGACTC
GGATACCCAGGATGCCAATGACTCAAGCTCTAAGTCATCTGAGAGGAGCCTCCCGGACTG
TACTCCACACCCCAACTCCATCAGCATCGATGCCGGCCCCCGGCAGGCCCCCAAGATTGC
CCAGATCAAGCGCAACCTCTCCTATGGAGACAACAGCGACCCTGCCCTAGAGGCATCCTC
GCTGCCCCCACCCGACCCCTGGCTGGAGACCTCCTCCAGCTCCCCAGCAGAGCCAGCGCA
GCCAGGGGCCTGCCGTCGAGATGGCTACTGGTTCTTGAAGCTTCTTCAAGCAGAGACGGA
GCGGCTGGAAGGCTGGTGCTGCCAGATGGACAAGGAGACCAAAGAGAACAACCTCTCTGA
AGAAGTCTTAGGAAAAGTCCTCAGTGCTGTGGGCAGTGCCCAGCTGCTGATGTCCCAGAA
ATTCCAGCAGTTCCGGGGCCTTTGTGAACAAAACTTGAACCCTGACGCCAACCCACGTCC
GACAGCCCAGGACCTGGCAGGGTTCTGGGACCTGCTGCAGCTGTCCATCGAGGACATCAG
CATGAAGTTTGATGAACTCTACCACCTCAAGGCCAACAGCTGGCAGCTGGTGGAGACCCC
CGAGAAGAGGAAGGAAGAGAAGAAACCACCCCCTCCGGTCCCAAAGAAGCCAGCCAAATC
CAAGCCGGCAGTGAGCCGCGACAAGGCCTCTGATGCTGGGGACAAGCAGCGTCAGGAGGC
CCGCAAGAGACTGCTGGCAGCCAAGCGGGCAGCTTCCGTGCGGCAGAACTCAGCCACAGA
GAGCGCAGACAGCATTGAGATTTATGTCCCCGAGGCCCAGACCCGGCTCTGAGACCAGAA
AGCAGGAAGCAGACAATTTTAAGGCATTTTAAAAAAAACCCACAAACTAAATGCAAATGG
AACAAAATTTTCTCAGCCTTTAGTATGGTTATTCTGTCTAGAGACCCTGAGCCAACTTTC
AAAATGATGCATACAAGGGCTCACGATTTGGCTTTTTTGGGTCCCTCCCAGCTTTAGGTT
ATGAAGACTTCACACAAATCAACAAAAACACAAAACTCTAAAACTTTTCTTCCTCTTGCT
GGCCGTGGTGGACTAGATAGATGGACTTCGGCAACTCCTCAGCCCAGCCTCCAGACTGCG
GTCTTTTTACTTGTTCTATCTAACGAGAACTTAAACTAGCTTGTTTACAAGATGACAACA
GCCCAAGGGCAGCCTTGGGCACCTGCCATGTCCTTCCTTCTCTCCCTGGCTATCCCGGCT
CTGACCTTGGAGTTTTCATTCTTACGTTTCTCTCTTTTCCCTTCAGAACAAAGCACGCAG
GGGTCACCATCCTGACTCTCGGCTTTCTGGTTCTCCGCCCTTTTGGTGGCTGAGCCCAGA
GGACAGAACGATGGACACGCGTCCCCTCCCCCACCAAGTGCTCACACACAGTCACACCCG
CGCGCACACGCAGATGTAGGTTCCTCCCACTGTGATCCGCCAGCCCTAGGCGGCGTCCGG
GGGTGACCCGCCTCTCTGAGGAGATGAGGAGGGTCGACGTCTTTGCGGGGAAATGAGATA
AAAACCGCAGTTACCACACTCCAGGCTCCCGCCTTTTTCTTCTCTCCAGCCCCTTCTTCC
TTCAGCAAAATATGACTCAGAGTGACTTGCAGGGGCCACTCGAGAGAGGGACCCCATTTC
CCAGGGGTGGTCTGTCCCTGGCCGAGCCTGTGTACAGTCCCGAGGGTGGGCGGCTGTGTC
TGTACGTATGTGTACATATGCACATAGACCTTAGAGTGTATATTTAACCAACGCCCATCT
GCTCACCCATGCCCACCAGCGCCGCCGCTGGCTCTCGGGGCACCTGGCAGGAGGCGGGGG
TGTGAATAGCATATATTTTTACATGTACTATATCTAGGTGTGTGTACAAGTGTGTGTAAA
AATATATACCTTGTGTGTAAGCAGCCTCCCCCCCCTTTTTTGGTCTCCCACCTGCCTCCC
CACCATGGGCCCATCTGCCCAGCCTCTGAGTTTTCTGTTCTCTTCTTTTACCCGAGTCAT
CCTTCTCTCTCCCCGAGCCCCACTCCCGGGGTGTCACGAGCCCTGAGCTGCAACGGCCTG
GGCCTGCAGGGCGAGGTAGGGGGCAGGGAGAGGGTGAGGCCCACCCGCAGCCAGCTCAGT
GCCCGAGGGCTGCTCTCTCCTGTGTCCACGACTAGGCACTGGACACGTCTCCGTGTCCGG
CACCTGCCACGGGGGCCCCGGATGAAGTGAGGGCCTGCTCTAGGGCCCATTCCAGCTTGG
CCACCGTCTGTGACCTTGGGCAAGTCACTTGACCTCTGTGTGCCTCAACTTCCTCCTCTG
TAAAATGGGGACAGTCCCCGCCCCTCCCTACCTCACAGGCATGTTGTGAGAATAAATGAG
GTAACGTGTAAA
|
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120-2656, - strand, RNAz p=0.979928 |
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611-770, - strand, RNAz p=0.624708 |
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997-1115, + strand, RNAz p=0.558302 |
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1190-1309, - strand, RNAz p=0.905746 |
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1732-1849, - strand, RNAz p=0.506064 |
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2170-2481, - strand, RNAz p=0.995712 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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120-2656, - strand, RNAz p=0.979928 |
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611-770, - strand, RNAz p=0.624708 |
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997-1115, + strand, RNAz p=0.558302 |
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1190-1309, - strand, RNAz p=0.905746 |
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1732-1849, - strand, RNAz p=0.506064 |
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2170-2481, - strand, RNAz p=0.995712 |
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41-405, gnl|bosTau2|chr13 (44636037-44636401) |
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41-405, gnl|canFam2|chr24 (28247665-28247442) |
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41-405, gnl|dasNov1|scaffold_13501 (12716-12477) |
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41-405, gnl|echTel1|scaffold_286911 (9237-9013) |
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41-405, gnl|hg17|chr1 (93564597-93564836) |
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41-405, gnl|Hg17|chr20 (34558521-34558885) |
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41-405, gnl|loxAfr1|scaffold_16118 (22892-22657) |
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41-405, gnl|mm7|chr2 (156487002-156486779) |
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41-405, gnl|Mm7|chr2 (156486724-156487088) |
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41-405, gnl|oryCun1|scaffold_215277 (88086-88321) |
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41-405, gnl|panTro1|chr1 (92546407-92546646) |
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41-405, gnl|rheMac2|chr1 (96416179-96416425) |
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41-405, gnl|rn3|chrX (83556357-83556609) |
| |
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492-905, gnl|bosTau2|chr13 (44639520-44639933) |
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492-905, gnl|Hg17|chr20 (34562015-34562428) |
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492-905, gnl|Mm7|chr2 (156489833-156490246) |
| |
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997-1148, gnl|bosTau2|chr24 (26575363-26575514) |
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997-1148, gnl|Hg17|chr18 (3492644-3492493) |
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997-1148, gnl|Mm7|chr17 (69094338-69094489) |
| |
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1151-2950, gnl|bosTau2|chr13 (44668496-44670330) |
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1151-2950, gnl|Hg17|chr20 (34588627-34590450) |
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1151-2950, gnl|Mm7|chr2 (156503572-156505252) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
41-405, gnl|bosTau2|chr13 (44636037-44636401) |
|
41-405, gnl|canFam2|chr24 (28247665-28247442) |
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41-405, gnl|dasNov1|scaffold_13501 (12716-12477) |
|
41-405, gnl|echTel1|scaffold_286911 (9237-9013) |
|
41-405, gnl|hg17|chr1 (93564597-93564836) |
|
41-405, gnl|Hg17|chr20 (34558521-34558885) |
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41-405, gnl|loxAfr1|scaffold_16118 (22892-22657) |
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41-405, gnl|mm7|chr2 (156487002-156486779) |
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41-405, gnl|Mm7|chr2 (156486724-156487088) |
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41-405, gnl|oryCun1|scaffold_215277 (88086-88321) |
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41-405, gnl|panTro1|chr1 (92546407-92546646) |
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41-405, gnl|rheMac2|chr1 (96416179-96416425) |
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41-405, gnl|rn3|chrX (83556357-83556609) |
| |
|
492-905, gnl|bosTau2|chr13 (44639520-44639933) |
|
492-905, gnl|Hg17|chr20 (34562015-34562428) |
|
492-905, gnl|Mm7|chr2 (156489833-156490246) |
| |
|
997-1148, gnl|bosTau2|chr24 (26575363-26575514) |
|
997-1148, gnl|Hg17|chr18 (3492644-3492493) |
|
997-1148, gnl|Mm7|chr17 (69094338-69094489) |
| |
|
1151-2950, gnl|bosTau2|chr13 (44668496-44670330) |
|
1151-2950, gnl|Hg17|chr20 (34588627-34590450) |
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1151-2950, gnl|Mm7|chr2 (156503572-156505252) |
|
clu (0.358938) |
|
ebs (0.354904) |
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nco (0.323468) |
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cga (0.279096) |
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fce (0.271592) |
|
ece (0.229305) |
|
cmu (0.186393) |
|
ton (0.1755) |
|
csp (0.161186) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
cov (0.132153) |
|
ese (0.126502) |
|
eep (0.122564) |
|
cly (0.120642) |
|
eru (0.120048) |
|
med (0.116252) |
|
ecc (0.115035) |
|
clu (0.358938) |
|
ebs (0.354904) |
|
nco (0.323468) |
|
cga (0.279096) |
|
fce (0.271592) |
|
ece (0.229305) |
|
cmu (0.186393) |
|
ton (0.1755) |
|
csp (0.161186) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
cov (0.132153) |
|
ese (0.126502) |
|
eep (0.122564) |
|
cly (0.120642) |
|
eru (0.120048) |
|
med (0.116252) |
|
ecc (0.115035) |
