Ss1.1-Utr1-UTR010012E10.5
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GCAAGCTAGCTGGGAAGCTCCCAGTTCTAAAGAGAAGCTGTTTACCAGAAGAGCATAACA
AGGGCAGGTCTGACTGCAAGGCTGGGAACCAGAGGAAGAGCCGCCACCAAGGGGACCCTA
GCTGGACCCTGGTTGGTCAATCACCTGCAGGACGAAGGAAGTGAGGATGCTGTTGGCCTG
CGTGCAAACAATCCTTGTCAGCAACATGCTCCTGGCAGAAGCCTATGGATCTGGAGGCTG
CTTCTGGGACAACGGCCACCTGTACCAGGCTGACCAGCTCTCCCCCTCGCCGGGCCTCCA
CTGCCTCAACTGGCTGGACGCGCAGAGCGGCCTGGCATCTGACCCAGAGTCGGGCCCGGG
CAACCACAGCTACTGCCGGAACCCGGACCAGGATCCGCGCGGGCCCTGGTGCTATGTCAG
CGGCGAGGCCGGAGCTCCCGAGAAACGGCTTTGCGAGGACCTGCGCTGCCCAGAGACCAA
TTCCCAGGGCCTGCCAACCTTCACAACAGAAACTGAAGAGGCGTCTGAAGTGCCAGGAGG
AGAGGAGGTGCAGGTGTTTGCCCCTGCCAATGCCCTGCCCGCCCGGAGCGAGGTGGCAGC
TGTGCAGCCAGTGATTGGGATCAGCCAGCGGGTGCGGGTGAACTCCAAGGAGAAAAAGGA
CCTGGGAACCCTGGGCTCCGTGCTGGGCATTACCATGATGGTGATCATCATTGCCATTGG
AGCTGGCATTGTCCTCGGTTACACCTACAAAAGGGGCAAGGACCTGAAAGAGCAGCACAA
GCAGAAAGCGTGTGAGAGGGAGATGCAGCGAATCACCCTGCCCTTGTCTGCCTTCACCAA
CCCCACCTGTGAGATCGTGGATGAGAAGACTGTCGTGGTCCACACCAGCCAGACTCCAGT
GGACCTTCAGGAGGGCAGTGCCCCCCTCATGGGCCAGGCGGGCACCCCAGGCGCCTGAGC
TCCCTACGACGGGCAGGAGCCCATGCAGACACTGGTGCAGGACTGCTAACCCTCCTAGAG
TTGGGAGGATCTACATTTTTTGTTGTGGTTAAAACCCCCCACTTTTTTTGGTTTGTTTTT
GGGGAATCCTAAGACAGAAGCAGGTGGCACTGTGGGCTGAGGGTGAGGCTGGGGAGGGTT
GCACCAGTGCTCTTTATGCATCCCTTGGAGCAGGATTTTGCCAGGGCATTGGAGATGATG
GTGGCCCCCACAGCAGTGCTGCTGACAGGGTCTTCCTGTGGCCCCAAACCAAACCAGGGA
TGGATAGGGAGCTCCTCCCAGCTCCTCTGTGCTTTACTGTCCAAGATGGCCTCAGCCTCT
GCCTCCCCATTTGTCTTCTGTGGGCTTGGGTGGCGCACACTGTTATTCATAGTTCAGGTC
AAGTAGGTCGAGAGGCGGCATTTAAAGAATATATTTAGTTTTTTAAATATTTGGGATGCA
ATTCCCTACTGACCTGTGAGAAACGCAAATGAGGCTGTACGAAAGTCAGAACTGTGGTTG
AATACAGGATCTAGGTGGGGGCTGCTGGCAGTGATGTGCCTTGACTACCGTGGGCCATGC
TCTGGCCCAGGGACTCTTCCTGTTTCGAAAGGAAAGGAGGGGAAGACTCACACTGAACAT
TCCACTTAGGAAGAGGGGAGAGAAGGATCTACAGCTGCCTCAGGCCATAGGACCCAAGTG
GACCCTGGGTGCCCCATCCAGTCCCTCTTCAGGGTGGACAGTGACCTGTCTTCATTCTTC
AGGTGTTAAGAAGACAGCCAGCTGACCTGCGGGGATGACACATGGGTGGGGCCTTGTGGA
CTGCTTCTCAGAGGTTAACTCTGCCCCACTGGGAGCTGGGTGATAGAGTGCTCATGGCTT
GCCCTGCCCTGGCCCGAGCCTGCAGGTGACTCTGTGGCCTCTAGGCCAGAGCCTTCCCAT
GGGGCAGTAGATTGTAAAGCAATCATGGAACCATTGGAAAGAAGCTTAGGGTTCCTCAAG
CCTTTGGGGTAGAGGGGCCAGAGGGAGAAGTGATGCTCAGGGTCACAGAGGAAGCTACTG
GCAGGGCCCAGAGGAGAGTAACGTTCCTTTAGGTGCCTGCCCATTGTGCCTCAGCTCAGC
AGGGCCTCCGAGCCTGGCTGCCATACTTGGAGGCCTCCGCAGTGCTCCCTGCCCACAGCG
CTTCCTTCTCAGAGCCCTTCCTCTGCCCTATGTGGAGGGGGTGGTGGGGCTCAGCCTCTT
CCGCAGGCTATTCCTGGGAGTGATTTGCTGAGGGGACCTGGGATTCAGGGGGGTCCCCTG
GTGGTAGTGATGCAGAAAAGAATATTACTGATTTCTACTTTTCTATGAAAGCATTTCTCC
ATGTACATGTTTTATATACCTCGTCTGACACCTGCGTATAAAGTGCAGGAAACTGCTCTG
CATTTGACTTACACAAATACATTT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GCAAGCTAGCTGGGAAGCTCCCAGTTCTAAAGAGAAGCTGTTTACCAGAAGAGCATAACA
AGGGCAGGTCTGACTGCAAGGCTGGGAACCAGAGGAAGAGCCGCCACCAAGGGGACCCTA
GCTGGACCCTGGTTGGTCAATCACCTGCAGGACGAAGGAAGTGAGGATGCTGTTGGCCTG
CGTGCAAACAATCCTTGTCAGCAACATGCTCCTGGCAGAAGCCTATGGATCTGGAGGCTG
CTTCTGGGACAACGGCCACCTGTACCAGGCTGACCAGCTCTCCCCCTCGCCGGGCCTCCA
CTGCCTCAACTGGCTGGACGCGCAGAGCGGCCTGGCATCTGACCCAGAGTCGGGCCCGGG
CAACCACAGCTACTGCCGGAACCCGGACCAGGATCCGCGCGGGCCCTGGTGCTATGTCAG
CGGCGAGGCCGGAGCTCCCGAGAAACGGCTTTGCGAGGACCTGCGCTGCCCAGAGACCAA
TTCCCAGGGCCTGCCAACCTTCACAACAGAAACTGAAGAGGCGTCTGAAGTGCCAGGAGG
AGAGGAGGTGCAGGTGTTTGCCCCTGCCAATGCCCTGCCCGCCCGGAGCGAGGTGGCAGC
TGTGCAGCCAGTGATTGGGATCAGCCAGCGGGTGCGGGTGAACTCCAAGGAGAAAAAGGA
CCTGGGAACCCTGGGCTCCGTGCTGGGCATTACCATGATGGTGATCATCATTGCCATTGG
AGCTGGCATTGTCCTCGGTTACACCTACAAAAGGGGCAAGGACCTGAAAGAGCAGCACAA
GCAGAAAGCGTGTGAGAGGGAGATGCAGCGAATCACCCTGCCCTTGTCTGCCTTCACCAA
CCCCACCTGTGAGATCGTGGATGAGAAGACTGTCGTGGTCCACACCAGCCAGACTCCAGT
GGACCTTCAGGAGGGCAGTGCCCCCCTCATGGGCCAGGCGGGCACCCCAGGCGCCTGAGC
TCCCTACGACGGGCAGGAGCCCATGCAGACACTGGTGCAGGACTGCTAACCCTCCTAGAG
TTGGGAGGATCTACATTTTTTGTTGTGGTTAAAACCCCCCACTTTTTTTGGTTTGTTTTT
GGGGAATCCTAAGACAGAAGCAGGTGGCACTGTGGGCTGAGGGTGAGGCTGGGGAGGGTT
GCACCAGTGCTCTTTATGCATCCCTTGGAGCAGGATTTTGCCAGGGCATTGGAGATGATG
GTGGCCCCCACAGCAGTGCTGCTGACAGGGTCTTCCTGTGGCCCCAAACCAAACCAGGGA
TGGATAGGGAGCTCCTCCCAGCTCCTCTGTGCTTTACTGTCCAAGATGGCCTCAGCCTCT
GCCTCCCCATTTGTCTTCTGTGGGCTTGGGTGGCGCACACTGTTATTCATAGTTCAGGTC
AAGTAGGTCGAGAGGCGGCATTTAAAGAATATATTTAGTTTTTTAAATATTTGGGATGCA
ATTCCCTACTGACCTGTGAGAAACGCAAATGAGGCTGTACGAAAGTCAGAACTGTGGTTG
AATACAGGATCTAGGTGGGGGCTGCTGGCAGTGATGTGCCTTGACTACCGTGGGCCATGC
TCTGGCCCAGGGACTCTTCCTGTTTCGAAAGGAAAGGAGGGGAAGACTCACACTGAACAT
TCCACTTAGGAAGAGGGGAGAGAAGGATCTACAGCTGCCTCAGGCCATAGGACCCAAGTG
GACCCTGGGTGCCCCATCCAGTCCCTCTTCAGGGTGGACAGTGACCTGTCTTCATTCTTC
AGGTGTTAAGAAGACAGCCAGCTGACCTGCGGGGATGACACATGGGTGGGGCCTTGTGGA
CTGCTTCTCAGAGGTTAACTCTGCCCCACTGGGAGCTGGGTGATAGAGTGCTCATGGCTT
GCCCTGCCCTGGCCCGAGCCTGCAGGTGACTCTGTGGCCTCTAGGCCAGAGCCTTCCCAT
GGGGCAGTAGATTGTAAAGCAATCATGGAACCATTGGAAAGAAGCTTAGGGTTCCTCAAG
CCTTTGGGGTAGAGGGGCCAGAGGGAGAAGTGATGCTCAGGGTCACAGAGGAAGCTACTG
GCAGGGCCCAGAGGAGAGTAACGTTCCTTTAGGTGCCTGCCCATTGTGCCTCAGCTCAGC
AGGGCCTCCGAGCCTGGCTGCCATACTTGGAGGCCTCCGCAGTGCTCCCTGCCCACAGCG
CTTCCTTCTCAGAGCCCTTCCTCTGCCCTATGTGGAGGGGGTGGTGGGGCTCAGCCTCTT
CCGCAGGCTATTCCTGGGAGTGATTTGCTGAGGGGACCTGGGATTCAGGGGGGTCCCCTG
GTGGTAGTGATGCAGAAAAGAATATTACTGATTTCTACTTTTCTATGAAAGCATTTCTCC
ATGTACATGTTTTATATACCTCGTCTGACACCTGCGTATAAAGTGCAGGAAACTGCTCTG
CATTTGACTTACACAAATACATTT
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
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1-237, gnl|bosTau2|chr17 (43581849-43581613) |
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1-237, gnl|canFam2|chr26 (27284379-27284757) |
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1-237, gnl|dasNov1|scaffold_9255 (57273-57636) |
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1-237, gnl|hg17|chr22 (30012632-30012988) |
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1-237, gnl|Hg17|chr22 (30013050-30012814) |
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1-237, gnl|loxAfr1|scaffold_5495 (65203-65575) |
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1-237, gnl|mm7|chr11 (3283185-3282835) |
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1-237, gnl|Mm7|chr11 (3282771-3283008) |
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1-237, gnl|oryCun1|scaffold_61882 (558-908) |
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1-237, gnl|panTro1|chr23_random (9050541-9050185) |
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1-237, gnl|rheMac2|chr10 (75178560-75178909) |
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1-237, gnl|rn3|chr14 (83975410-83975059) |
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470-675, gnl|bosTau2|chr17 (43579488-43579289) |
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470-675, gnl|Hg17|chr22 (30010243-30010038) |
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470-675, gnl|Mm7|chr11 (3285208-3285416) |
| |
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752-1852, gnl|bosTau2|chr17 (43572676-43571584) |
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752-1852, gnl|Hg17|chr22 (30003830-30002726) |
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752-1852, gnl|Mm7|chr11 (3293524-3294582) |
| |
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2104-2409, gnl|bosTau2|chr17 (43571396-43571088) |
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2104-2409, gnl|Hg17|chr22 (30002445-30002158) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-237, gnl|bosTau2|chr17 (43581849-43581613) |
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1-237, gnl|canFam2|chr26 (27284379-27284757) |
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1-237, gnl|dasNov1|scaffold_9255 (57273-57636) |
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1-237, gnl|hg17|chr22 (30012632-30012988) |
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1-237, gnl|Hg17|chr22 (30013050-30012814) |
|
1-237, gnl|loxAfr1|scaffold_5495 (65203-65575) |
|
1-237, gnl|mm7|chr11 (3283185-3282835) |
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1-237, gnl|Mm7|chr11 (3282771-3283008) |
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1-237, gnl|oryCun1|scaffold_61882 (558-908) |
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1-237, gnl|panTro1|chr23_random (9050541-9050185) |
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1-237, gnl|rheMac2|chr10 (75178560-75178909) |
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1-237, gnl|rn3|chr14 (83975410-83975059) |
| |
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470-675, gnl|bosTau2|chr17 (43579488-43579289) |
|
470-675, gnl|Hg17|chr22 (30010243-30010038) |
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470-675, gnl|Mm7|chr11 (3285208-3285416) |
| |
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752-1852, gnl|bosTau2|chr17 (43572676-43571584) |
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752-1852, gnl|Hg17|chr22 (30003830-30002726) |
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752-1852, gnl|Mm7|chr11 (3293524-3294582) |
| |
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2104-2409, gnl|bosTau2|chr17 (43571396-43571088) |
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2104-2409, gnl|Hg17|chr22 (30002445-30002158) |
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cov (0.660764) |
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lnt (0.426925) |
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fhi (0.339155) |
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cag (0.302389) |
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ecc (0.23007) |
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ece (0.229305) |
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nlu (0.191681) |
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fbs (0.175346) |
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eye (0.170503) |
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nco (0.161734) |
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pty (0.142714) |
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cly (0.120642) |
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cty (0.10408) |
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eje (0.0988338) |
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cov (0.660764) |
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lnt (0.426925) |
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fhi (0.339155) |
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cag (0.302389) |
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ecc (0.23007) |
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ece (0.229305) |
|
nlu (0.191681) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
nco (0.161734) |
|
pty (0.142714) |
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cly (0.120642) |
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cty (0.10408) |
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eje (0.0988338) |
