Ss1.1-Utr1-UTR010012E12.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCTCCCCCCACCCTTCCAGAAGTTTTTCTGTCACCTGGGCTTGCTTCTGTTCCTTTCC CCCGTTTTATTCCTATACCAGAAAAGGGTATTTTTAGTGTCGCCTTCCCGGCTCCACTAA GGGGGTTGGCTATCTCACTCCCCGAGTCGGGGGTCCTTCCCCTCGTCCCCATGTAGCTGA GAAGGGGGACCTGGGGGTGGTTGGACCCCTGGGACCCTGAGGAAGGGCCAGAGAGGGCGC AGAACTCCGCTTCTGCTCCTGCTATCGGGACGCGGCCTCCTCCGCCTCTCCCCTCCCGCT GCCATGCACCCTGCGGCCTTCCCGCTTCCTGTGGTTGTGGCCACTGTGCTGTGGGGAGTG GCCCCCAGCCAGGGGCTTATTCGAGCGATCTCGGACCACAATGCCAGCATGGACTTTGCA GACCTCCCAGCTCTCTTTGGGGCTGCCTTGAGCCAGGAGGGACTTCAGGGCTTCCTTGTG GAGGCTCACCCAGACAATGCCTGCAGCCCCATTGCCCCACCACCCCCAGCCCCGGTCAAT GGGTCAGTCTTTATTGCACTGCTTCGAAGATTCGACTGCAACTTTGACCTCAAGGTCCTG AATGCTCAGAAGGCTGGGTATGGTGCTGCTGTGGTTCACAACGTAAACTCCAATGAACTT CTGAACATGGTGTGGAATAGTGAGGAAATCCAGCAGCAGATCTGGATCCCGTCTGTGTTC ATTGGGGAGAGGAGCTCCCAGTACCTGCGTGCCCTCTTTGTCTACGAGAAGGGGGCTCGG GTGCTCCTGGTCCCAGACAATAGCTTCCCCTTGGGCTATTACCTCATCCCTTTCACAGGG ATTGTGGGACTGCTGGTTTTGGCCATGGGAGCAGTGATGATAGTTCGTTGTATCCAGCAC CGGAAACGGCTCCAGCGGAATCGACTGACCAAAGAGCAACTAAAACAGATTCCTACACAT GACTATCAAAAGGGGGACCAGTATGATGTGTGTGCCATCTGCCTGGATGAATATGAGGAT GGTGACAGGCTGAGGGTACTCCCCTGTGCTCACGCTTACCACAGCCGCTGTGTGGACCCC TGGCTCACTCAGACCCGGAAGACCTGCCCCATCTGCAAGCAGCCTGTTCATCGGGGTCCT GGGGACGAGGAGCAGGAAGAAGAAACCCAGGAGCAAGAGGGCGATGAGGAAGGGGAGCCA AGGGACCACCCTGCCTCTGAGCGGACCCCACTTCTGGGCTCCAGCCCCACGCTTCCCACC TCCTTTGGCTCCCTAGCCCCTGCCCCCCTTGTCTTTCCTGGGTCTTCAACAGACCCCTCA CCCTCTATCTCCTCTTCAGCTGCCGTCTTGGTCTAAAGCACCCCCCTCCCCCCCCCCCCC CGCCAAATGACTTATTTGCACAGCCCCTCTTCCTTCCCAGTCTTCTATGCTGAGGACAGA AGACACTTCCACCCGGGGTTTCTCTTTACCCAACTCCATCCTTTTGAATGGGTTGGGGAC ACAAAGGGATGGGGTCTTCACTTACTGGTTAATAAAATTGCTACTGTGGACTAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCTCCCCCCACCCTTCCAGAAGTTTTTCTGTCACCTGGGCTTGCTTCTGTTCCTTTCC CCCGTTTTATTCCTATACCAGAAAAGGGTATTTTTAGTGTCGCCTTCCCGGCTCCACTAA GGGGGTTGGCTATCTCACTCCCCGAGTCGGGGGTCCTTCCCCTCGTCCCCATGTAGCTGA GAAGGGGGACCTGGGGGTGGTTGGACCCCTGGGACCCTGAGGAAGGGCCAGAGAGGGCGC AGAACTCCGCTTCTGCTCCTGCTATCGGGACGCGGCCTCCTCCGCCTCTCCCCTCCCGCT GCCATGCACCCTGCGGCCTTCCCGCTTCCTGTGGTTGTGGCCACTGTGCTGTGGGGAGTG GCCCCCAGCCAGGGGCTTATTCGAGCGATCTCGGACCACAATGCCAGCATGGACTTTGCA GACCTCCCAGCTCTCTTTGGGGCTGCCTTGAGCCAGGAGGGACTTCAGGGCTTCCTTGTG GAGGCTCACCCAGACAATGCCTGCAGCCCCATTGCCCCACCACCCCCAGCCCCGGTCAAT GGGTCAGTCTTTATTGCACTGCTTCGAAGATTCGACTGCAACTTTGACCTCAAGGTCCTG AATGCTCAGAAGGCTGGGTATGGTGCTGCTGTGGTTCACAACGTAAACTCCAATGAACTT CTGAACATGGTGTGGAATAGTGAGGAAATCCAGCAGCAGATCTGGATCCCGTCTGTGTTC ATTGGGGAGAGGAGCTCCCAGTACCTGCGTGCCCTCTTTGTCTACGAGAAGGGGGCTCGG GTGCTCCTGGTCCCAGACAATAGCTTCCCCTTGGGCTATTACCTCATCCCTTTCACAGGG ATTGTGGGACTGCTGGTTTTGGCCATGGGAGCAGTGATGATAGTTCGTTGTATCCAGCAC CGGAAACGGCTCCAGCGGAATCGACTGACCAAAGAGCAACTAAAACAGATTCCTACACAT GACTATCAAAAGGGGGACCAGTATGATGTGTGTGCCATCTGCCTGGATGAATATGAGGAT GGTGACAGGCTGAGGGTACTCCCCTGTGCTCACGCTTACCACAGCCGCTGTGTGGACCCC TGGCTCACTCAGACCCGGAAGACCTGCCCCATCTGCAAGCAGCCTGTTCATCGGGGTCCT GGGGACGAGGAGCAGGAAGAAGAAACCCAGGAGCAAGAGGGCGATGAGGAAGGGGAGCCA AGGGACCACCCTGCCTCTGAGCGGACCCCACTTCTGGGCTCCAGCCCCACGCTTCCCACC TCCTTTGGCTCCCTAGCCCCTGCCCCCCTTGTCTTTCCTGGGTCTTCAACAGACCCCTCA CCCTCTATCTCCTCTTCAGCTGCCGTCTTGGTCTAAAGCACCCCCCTCCCCCCCCCCCCC CGCCAAATGACTTATTTGCACAGCCCCTCTTCCTTCCCAGTCTTCTATGCTGAGGACAGA AGACACTTCCACCCGGGGTTTCTCTTTACCCAACTCCATCCTTTTGAATGGGTTGGGGAC ACAAAGGGATGGGGTCTTCACTTACTGGTTAATAAAATTGCTACTGTGGACTAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1133-1292, - strand, RNAz p=0.946293 | |
| 1413-1513, - strand, RNAz p=0.960574 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1133-1292, - strand, RNAz p=0.946293 | |
| 1413-1513, - strand, RNAz p=0.960574 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 207-387, gnl|bosTau2|chr19 (14831746-14831924) | |
| 207-387, gnl|canFam2|chr5 (34673606-34673471) | |
| 207-387, gnl|echTel1|scaffold_308456 (103907-103768) | |
| 207-387, gnl|hg17|chr17 (4784851-4784991) | |
| 207-387, gnl|Hg17|chr17 (4784850-4785033) | |
| 207-387, gnl|mm7|chr11 (70729346-70729484) | |
| 207-387, gnl|Mm7|chr11 (70729345-70729526) | |
| 207-387, gnl|monDom2|scaffold_66 (3456252-3456105) | |
| 207-387, gnl|oryCun1|scaffold_177492 (76621-76484) | |
| 207-387, gnl|panTro1|chr19 (5113134-5113274) | |
| 207-387, gnl|rheMac2|chr16 (4741941-4742081) | |
| 207-387, gnl|rn3|chr10 (57541172-57541309) | |
| 466-604, gnl|bosTau2|chr19 (14833287-14833426) | |
| 466-604, gnl|Hg17|chr17 (4786378-4786517) | |
| 466-604, gnl|Mm7|chr11 (70730792-70730931) | |
| 773-879, gnl|bosTau2|chr19 (14834060-14834166) | |
| 773-879, gnl|canFam2|chr5 (34671180-34671047) | |
| 773-879, gnl|danRer3|chr7 (53964512-53964643) | |
| 773-879, gnl|dasNov1|scaffold_157245 (344-209) | |
| 773-879, gnl|echTel1|scaffold_308456 (101479-101340) | |
| 773-879, gnl|hg17|chr17 (4787197-4787331) | |
| 773-879, gnl|Hg17|chr17 (4787218-4787324) | |
| 773-879, gnl|mm7|chr11 (70731463-70731598) | |
| 773-879, gnl|Mm7|chr11 (70731485-70731591) | |
| 773-879, gnl|monDom2|scaffold_66 (3453722-3453582) | |
| 773-879, gnl|oryCun1|scaffold_177492 (74736-74601) | |
| 773-879, gnl|panTro1|chr19 (5115492-5115626) | |
| 773-879, gnl|rheMac2|chr16 (4744235-4744368) | |
| 773-879, gnl|rn3|chr10 (57543363-57543496) | |
| 773-879, gnl|xenTro1|scaffold_1757 (56643-56506) | |
| 1054-1554, gnl|bosTau2|chr19 (14835186-14835682) | |
| 1054-1554, gnl|Hg17|chr17 (4788754-4789262) | |
| 1054-1554, gnl|Mm7|chr11 (70732495-70732991) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 207-387, gnl|bosTau2|chr19 (14831746-14831924) | |
| 207-387, gnl|canFam2|chr5 (34673606-34673471) | |
| 207-387, gnl|echTel1|scaffold_308456 (103907-103768) | |
| 207-387, gnl|hg17|chr17 (4784851-4784991) | |
| 207-387, gnl|Hg17|chr17 (4784850-4785033) | |
| 207-387, gnl|mm7|chr11 (70729346-70729484) | |
| 207-387, gnl|Mm7|chr11 (70729345-70729526) | |
| 207-387, gnl|monDom2|scaffold_66 (3456252-3456105) | |
| 207-387, gnl|oryCun1|scaffold_177492 (76621-76484) | |
| 207-387, gnl|panTro1|chr19 (5113134-5113274) | |
| 207-387, gnl|rheMac2|chr16 (4741941-4742081) | |
| 207-387, gnl|rn3|chr10 (57541172-57541309) | |
| 466-604, gnl|bosTau2|chr19 (14833287-14833426) | |
| 466-604, gnl|Hg17|chr17 (4786378-4786517) | |
| 466-604, gnl|Mm7|chr11 (70730792-70730931) | |
| 773-879, gnl|bosTau2|chr19 (14834060-14834166) | |
| 773-879, gnl|canFam2|chr5 (34671180-34671047) | |
| 773-879, gnl|danRer3|chr7 (53964512-53964643) | |
| 773-879, gnl|dasNov1|scaffold_157245 (344-209) | |
| 773-879, gnl|echTel1|scaffold_308456 (101479-101340) | |
| 773-879, gnl|hg17|chr17 (4787197-4787331) | |
| 773-879, gnl|Hg17|chr17 (4787218-4787324) | |
| 773-879, gnl|mm7|chr11 (70731463-70731598) | |
| 773-879, gnl|Mm7|chr11 (70731485-70731591) | |
| 773-879, gnl|monDom2|scaffold_66 (3453722-3453582) | |
| 773-879, gnl|oryCun1|scaffold_177492 (74736-74601) | |
| 773-879, gnl|panTro1|chr19 (5115492-5115626) | |
| 773-879, gnl|rheMac2|chr16 (4744235-4744368) | |
| 773-879, gnl|rn3|chr10 (57543363-57543496) | |
| 773-879, gnl|xenTro1|scaffold_1757 (56643-56506) | |
| 1054-1554, gnl|bosTau2|chr19 (14835186-14835682) | |
| 1054-1554, gnl|Hg17|chr17 (4788754-4789262) | |
| 1054-1554, gnl|Mm7|chr11 (70732495-70732991) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| ece (0.45861) | |
| cov (0.396458) | |
| fce (0.271592) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| col (0.195008) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| cov (0.396458) | |
| fce (0.271592) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| col (0.195008) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |