Non-Coding RNA Search

Ss1.1-Utr1-UTR010012G12.5.5

Sequence:


               
               GCAGCTGAGGTAAACTTTTATTTCTTGGCTGACAACTTTCACGCCCATGCTCCTCCCAGC
ACCTTTCATCCTGCCCAAGCAGTGGCAGCCTAGTCCAAAAGGTGCCATGGCCAAAGGGGT
TGGGGAGTCACTTCACATTCCAGGCTGGAGGAGTAGGGGGCTTGGGGATACTCCCCCCAT
AAACCTTTGCCAGCAAGAGGCCATGACTCACCCCAACCTCAAATCCTGCATCCTGGTGGG
AGGTGGCAGTGCCTCCTTCCAGCTCTCCAAACCTGAGAGGGGGAATGACCAAACAGGGCA
GGACACAGGGGCCCAGCTCCAGTAACGGCAGCCCCCAGCACTGGCCTCTGCCCGGGTCAC
AACCCCAGTCCCCATCCCAGGGCAGGAGAGGTCTCTCCTCCTCCTTGGTCCTCAGCGTTG
GACGGAGCCCTCCACACCAGGCAGGACAGAGGCAAAGTCAGAAGCAGAGGCGGTGGCGGG
GAAGGAGCAGGCACTGAGACTGGTGGGCTGCTGGCCTGGCAGCACCAGGGCCCAGGGCTC
TCTGAAGTCAGGGCAAGCCGGCTGTCCATGCAGCTCTGGGGCTGGCCACTAGGTGGGCGT
AGTTGGCTGCGATACAGGTACTTGGACACCTTTCTGTCCTGCTGCTAGCTGATACTTGTC
TTTGGCTGCTGCTCTCTCCTTGGCGTCAAAATACCAGACAGTGATGGCATACCTGGTGGC
ATAGGCTGGTTTCACCTCATGGGGGTTCCGCCGATCAGACCAGAAAATGAGCAGCCGGTC
AAAGAGTGGCTCGATGTTGGCTACCACAGGCCGGCCCTCTGGGAATATCTGCAGCAGGCC
GCCATGCACCTTGACGTCCCAGTTCTGATTCAGGTAATAGATACAGGTGATGCAGCGCCC
ATCGCCGTGGGGATTGTCAACGTGTCTCACGTACCCCAGCCCGTTGCCTGGGTAACATGC
CACCATGGCCTTGGTGCGCCCGTTGATGACGTAGCTGCCCAGCCTCCCAGCACAGTGGCG
GATTACAGCATCCACGTGGGCCATAAGAGCACCAATGCTTCGGCAGCCGGGCTCATGGCC
TTCCACCCAGGCAATCTGGTCCCCACGGATGCTGCGTGGCGGGATAGCCCGCTGGCTCAC
TAGCTGCCCGTCACGCAGGCGCCCGCCCCGCTTCAGGGCCTCCACCTCGGCCAGCACACG
GCCACCTAGTGCCGCCCCCAGGAAACTGTCCTTGACGCAGATGCCATAGTACCGCATGCA
GGGCACAATATAGTCCAGGGCCAGGCGCTCCGGTGCAGCGGGCAGCACCTCCTCCCTCAG
CCCAGCACTGGGCTCACCACTGCCACTGCTGCAGCCCTCCCCCTCGGCCTCAGCCTCCTG
GTTCTCCTGCCTGGCCCAGGGCCGTTTGCTGGGTGCGGGGGCATCCCCACCACCCTCTGC
CCATTTCCGTTTGGGGGCCTCGGGCCGGGCGCCCTGGGCTGCCAGCCGCTGGCACCCCTT
GGTGACCAGTGCCGCAGCACCCTCACTCTGCAGCGGCCGCAGCTCGCCGCCATCCTGCCC
ACCGAAGCCCTCCCGCAGGGGGCTGGCTGTGGTGGAAGTAGCTGTGGCTCTGGGGGTCCC
ACTTCCCGCCGAGGCCTCACCAGGCGCTCCTGGACAGTGGTAGGAGGACAGCAGGGGACA
GGGCAGGTAACTCTCCACCCCCATCCTGGCCCGGTTAGGCTCCAACGGTTCTGACACGGA
ACCAGGCAACTGAGGGAGAGCCTGACTCAGGGGCTGCGGCTGGCACGGGCTGTCCATGGC
AGCAGTGTCTTCATCCCCCGGGCATGGAGGGCACGGCCCAGGCCCATGGTGCCACCCTCC
TCCACCTCCTCCTCCTCCACTTGATGCAGCCGGGGGCCAGGGCAGCTGGGCCTGGCGTGG
GGCAGGATGAGGCAGGGCAGGTGACAGAAACTTTTCTCGTGCCCTGGGGGTGCTCGCTGG
TCCCCAAATCCTCTGATGTCCCTAGGGGCTTGGGAAGAGAACTGTCACGATGGCCAGCTT
TTTCCTCCGGCCCCGGCGCCGCCGTTTGTGCCAGCCGCCCTGCGCCGCACAGCGCGCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCTGAGGTAAACTTTTATTTCTTGGCTGACAACTTTCACGCCCATGCTCCTCCCAGC
ACCTTTCATCCTGCCCAAGCAGTGGCAGCCTAGTCCAAAAGGTGCCATGGCCAAAGGGGT
TGGGGAGTCACTTCACATTCCAGGCTGGAGGAGTAGGGGGCTTGGGGATACTCCCCCCAT
AAACCTTTGCCAGCAAGAGGCCATGACTCACCCCAACCTCAAATCCTGCATCCTGGTGGG
AGGTGGCAGTGCCTCCTTCCAGCTCTCCAAACCTGAGAGGGGGAATGACCAAACAGGGCA
GGACACAGGGGCCCAGCTCCAGTAACGGCAGCCCCCAGCACTGGCCTCTGCCCGGGTCAC
AACCCCAGTCCCCATCCCAGGGCAGGAGAGGTCTCTCCTCCTCCTTGGTCCTCAGCGTTG
GACGGAGCCCTCCACACCAGGCAGGACAGAGGCAAAGTCAGAAGCAGAGGCGGTGGCGGG
GAAGGAGCAGGCACTGAGACTGGTGGGCTGCTGGCCTGGCAGCACCAGGGCCCAGGGCTC
TCTGAAGTCAGGGCAAGCCGGCTGTCCATGCAGCTCTGGGGCTGGCCACTAGGTGGGCGT
AGTTGGCTGCGATACAGGTACTTGGACACCTTTCTGTCCTGCTGCTAGCTGATACTTGTC
TTTGGCTGCTGCTCTCTCCTTGGCGTCAAAATACCAGACAGTGATGGCATACCTGGTGGC
ATAGGCTGGTTTCACCTCATGGGGGTTCCGCCGATCAGACCAGAAAATGAGCAGCCGGTC
AAAGAGTGGCTCGATGTTGGCTACCACAGGCCGGCCCTCTGGGAATATCTGCAGCAGGCC
GCCATGCACCTTGACGTCCCAGTTCTGATTCAGGTAATAGATACAGGTGATGCAGCGCCC
ATCGCCGTGGGGATTGTCAACGTGTCTCACGTACCCCAGCCCGTTGCCTGGGTAACATGC
CACCATGGCCTTGGTGCGCCCGTTGATGACGTAGCTGCCCAGCCTCCCAGCACAGTGGCG
GATTACAGCATCCACGTGGGCCATAAGAGCACCAATGCTTCGGCAGCCGGGCTCATGGCC
TTCCACCCAGGCAATCTGGTCCCCACGGATGCTGCGTGGCGGGATAGCCCGCTGGCTCAC
TAGCTGCCCGTCACGCAGGCGCCCGCCCCGCTTCAGGGCCTCCACCTCGGCCAGCACACG
GCCACCTAGTGCCGCCCCCAGGAAACTGTCCTTGACGCAGATGCCATAGTACCGCATGCA
GGGCACAATATAGTCCAGGGCCAGGCGCTCCGGTGCAGCGGGCAGCACCTCCTCCCTCAG
CCCAGCACTGGGCTCACCACTGCCACTGCTGCAGCCCTCCCCCTCGGCCTCAGCCTCCTG
GTTCTCCTGCCTGGCCCAGGGCCGTTTGCTGGGTGCGGGGGCATCCCCACCACCCTCTGC
CCATTTCCGTTTGGGGGCCTCGGGCCGGGCGCCCTGGGCTGCCAGCCGCTGGCACCCCTT
GGTGACCAGTGCCGCAGCACCCTCACTCTGCAGCGGCCGCAGCTCGCCGCCATCCTGCCC
ACCGAAGCCCTCCCGCAGGGGGCTGGCTGTGGTGGAAGTAGCTGTGGCTCTGGGGGTCCC
ACTTCCCGCCGAGGCCTCACCAGGCGCTCCTGGACAGTGGTAGGAGGACAGCAGGGGACA
GGGCAGGTAACTCTCCACCCCCATCCTGGCCCGGTTAGGCTCCAACGGTTCTGACACGGA
ACCAGGCAACTGAGGGAGAGCCTGACTCAGGGGCTGCGGCTGGCACGGGCTGTCCATGGC
AGCAGTGTCTTCATCCCCCGGGCATGGAGGGCACGGCCCAGGCCCATGGTGCCACCCTCC
TCCACCTCCTCCTCCTCCACTTGATGCAGCCGGGGGCCAGGGCAGCTGGGCCTGGCGTGG
GGCAGGATGAGGCAGGGCAGGTGACAGAAACTTTTCTCGTGCCCTGGGGGTGCTCGCTGG
TCCCCAAATCCTCTGATGTCCCTAGGGGCTTGGGAAGAGAACTGTCACGATGGCCAGCTT
TTTCCTCCGGCCCCGGCGCCGCCGTTTGTGCCAGCCGCCCTGCGCCGCACAGCGCGCCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5RA97_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RA97_PONPY

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-382, - strand, RNAz p=0.95615
               

               
               1403-1562, - strand, RNAz p=0.645932

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-382, - strand, RNAz p=0.95615
               

               
               1403-1562, - strand, RNAz p=0.645932

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_017555, -
               

               
               5' of BC001723, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017555, -
               

               
               5' of BC001723, -

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               5-646, gnl|bosTau2|chr18 (45493509-45492884)
               

               
               5-646, gnl|Hg17|chr19 (46006170-46005552)
               

               
               5-646, gnl|Mm7|chr7 (24077524-24078072)
               


               
               710-851, gnl|bosTau2|chr18 (45492347-45492206)
               

               
               710-851, gnl|Hg17|chr19 (46005022-46004881)
               

               
               710-851, gnl|Mm7|chr7 (24078643-24078784)
               


               
               969-2034, gnl|bosTau2|chr18 (45486641-45485585)
               

               
               969-2034, gnl|Hg17|chr19 (45999161-45998083)
               

               
               969-2034, gnl|Mm7|chr7 (24083478-24084588)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-646, gnl|bosTau2|chr18 (45493509-45492884)
               

               
               5-646, gnl|Hg17|chr19 (46006170-46005552)
               

               
               5-646, gnl|Mm7|chr7 (24077524-24078072)
               


               
               710-851, gnl|bosTau2|chr18 (45492347-45492206)
               

               
               710-851, gnl|Hg17|chr19 (46005022-46004881)
               

               
               710-851, gnl|Mm7|chr7 (24078643-24078784)
               


               
               969-2034, gnl|bosTau2|chr18 (45486641-45485585)
               

               
               969-2034, gnl|Hg17|chr19 (45999161-45998083)
               

               
               969-2034, gnl|Mm7|chr7 (24083478-24084588)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.427716)
               

               
               elu (0.385356)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               elu (0.385356)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               jca (0.11396)

	5-382, - strand, RNAz p=0.95615
	1403-1562, - strand, RNAz p=0.645932

	5-646, gnl\|bosTau2\|chr18 (45493509-45492884)
	5-646, gnl\|Hg17\|chr19 (46006170-46005552)
	5-646, gnl\|Mm7\|chr7 (24077524-24078072)

	710-851, gnl\|bosTau2\|chr18 (45492347-45492206)
	710-851, gnl\|Hg17\|chr19 (46005022-46004881)
	710-851, gnl\|Mm7\|chr7 (24078643-24078784)

	969-2034, gnl\|bosTau2\|chr18 (45486641-45485585)
	969-2034, gnl\|Hg17\|chr19 (45999161-45998083)
	969-2034, gnl\|Mm7\|chr7 (24083478-24084588)

	nms (0.427716)
	elu (0.385356)
	col (0.195008)
	nlu (0.191681)
	jca (0.11396)