Non-Coding RNA Search

Ss1.1-Utr1-UTR010013C05.5

Sequence:


               
               GTTTGTGCTGATTTCATAACCAGCATTCTTCTTTCTGACTCAGCTAAGTGCAGCCCATTC
CACAGAGTCCAGCCCCCACCCCCGTCTAGCCGGGGTTCTTTGCTCATAACTTTAAGATGT
TTGATTTGGTTTTGAGAAAGTAAACCAGTTTATTTTTTCCCGATGATTTGTTCTTTAGCT
CCCAAATGTGTCTGCTCCGCCACAGAGCCGCCGTCTTCCAGGACCTGCTCTGCGGGGCCC
TGCACTTCCCTGCCTCCAGCTCCACCCTCCCTGGACCTCCGCGCCCCCTGATCGCGGTGC
CTTGGGTCAGAGCCTCCTCGAGCCCGGGCTGCTCCTTCTGCCACATCCCCGCCTCCCGAG
CGAGGTTCGTCATGGCCCAGAAGGGGTGTCCGAGCTCGCTGCCTCCGGGCCTCCCCTCCT
GAGGAGCCAGGACTGATGGCTTTCTGGCCTAGATGGCTGTCACCCGCAGGGAGATTGGCT
GATGGCGGGTTTGAGCAAGCCAACCTTTGTTACAAATTTTACTAAACAATTTGAAGTGAA
GATTTCATTCGCCCTCTCCTGGCACTCACGTTAGGGCGTCAGTACTGTCGTGCTCGCAGG
GCTTCCTCCAGGAAATTGCCGCTGTGCTAGTTCTTCTCTGCTGCCTCGAAAATAGACCAG
GTACTACCCTGTGAAATCTGGGCTGTTTATAAAGTCCTCTGGGTTTCTTTATAGTATCAG
GGATATTCATAAGCGTATATTAAAAGCAGACCTATTTTGATAGTGTTTTGTTAAGAAAAT
GTAATTAGAACTCCCCCAAATTAGTATTTTTCCCCTCACATCTGTACTGGGGAAAAAAGA
TACTGGCTTGGCCTACTTGTGAGCAGGGCAGCGAGCGCCCTGCTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGTGCTGATTTCATAACCAGCATTCTTCTTTCTGACTCAGCTAAGTGCAGCCCATTC
CACAGAGTCCAGCCCCCACCCCCGTCTAGCCGGGGTTCTTTGCTCATAACTTTAAGATGT
TTGATTTGGTTTTGAGAAAGTAAACCAGTTTATTTTTTCCCGATGATTTGTTCTTTAGCT
CCCAAATGTGTCTGCTCCGCCACAGAGCCGCCGTCTTCCAGGACCTGCTCTGCGGGGCCC
TGCACTTCCCTGCCTCCAGCTCCACCCTCCCTGGACCTCCGCGCCCCCTGATCGCGGTGC
CTTGGGTCAGAGCCTCCTCGAGCCCGGGCTGCTCCTTCTGCCACATCCCCGCCTCCCGAG
CGAGGTTCGTCATGGCCCAGAAGGGGTGTCCGAGCTCGCTGCCTCCGGGCCTCCCCTCCT
GAGGAGCCAGGACTGATGGCTTTCTGGCCTAGATGGCTGTCACCCGCAGGGAGATTGGCT
GATGGCGGGTTTGAGCAAGCCAACCTTTGTTACAAATTTTACTAAACAATTTGAAGTGAA
GATTTCATTCGCCCTCTCCTGGCACTCACGTTAGGGCGTCAGTACTGTCGTGCTCGCAGG
GCTTCCTCCAGGAAATTGCCGCTGTGCTAGTTCTTCTCTGCTGCCTCGAAAATAGACCAG
GTACTACCCTGTGAAATCTGGGCTGTTTATAAAGTCCTCTGGGTTTCTTTATAGTATCAG
GGATATTCATAAGCGTATATTAAAAGCAGACCTATTTTGATAGTGTTTTGTTAAGAAAAT
GTAATTAGAACTCCCCCAAATTAGTATTTTTCCCCTCACATCTGTACTGGGGAAAAAAGA
TACTGGCTTGGCCTACTTGTGAGCAGGGCAGCGAGCGCCCTGCTTTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-112, - strand, RNAz p=0.584037
               

               
               775-888, - strand, RNAz p=0.568777

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-112, - strand, RNAz p=0.584037
               

               
               775-888, - strand, RNAz p=0.568777

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-888, gnl|bosTau2|chr21 (38623735-38622836)
               

               
               1-888, gnl|Hg17|chr14 (92763291-92764177)
               

               
               1-888, gnl|Mm7|chr12 (100271209-100272013)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr21 (38623735-38622836)
               

               
               1-888, gnl|Hg17|chr14 (92763291-92764177)
               

               
               1-888, gnl|Mm7|chr12 (100271209-100272013)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	1-112, - strand, RNAz p=0.584037
	775-888, - strand, RNAz p=0.568777

	1-888, gnl\|bosTau2\|chr21 (38623735-38622836)
	1-888, gnl\|Hg17\|chr14 (92763291-92764177)
	1-888, gnl\|Mm7\|chr12 (100271209-100272013)