Non-Coding RNA Search

Ss1.1-Utr1-UTR010013E05.5

Sequence:


               
               GTGCTGGCCCAGCAGAGCCTGTACCTGCACAGGTACTACTTCGAGCTGGAGCTCTCCGGG
GCCGGCGTCTACGTAGGCCTGACGTGCAAAGGCATCGACCGGAAGGGCGAGGAACGCAAC
AGCTGCATTTCTGGAAACAGCTTCTCCTGGAGCCTCCACTGGGACGGGAAGGCGTTCAGG
GCGTGGCACAGCGACACGGAGACCCCGCTCAAGGCCAGCCCTTGCCGGAGGCTGGGGGTC
TACGTGGACTCTCCGGGCGGGGTCCTCTCCTTCTACGGCGTGGAGCCCGATGCCATGACT
CTGGTGCACAGGTTTGACTGCAGGTTCTCGGAGCCCGTCTACCCCGCCTTCTGGCTTTCC
AAGAAGGAGGACGCCATCCGGATTGTGGATCTGGGAGAGGAACTGGGAAAGCCGGCGCCC
ACCTCAGTGGAGGCTGCTCCCTAGAGGCCGGAATCCGCTTCCCGCAGATGGGACGGCAGC
CTGGTCCAAGGGGGTCCCTGCCAGTGGGAGCCGCCTTAGAAGTCGCGCGGGAAGGGTCTC
TGGCTGCCACACGGCGCTCTTCTCCACGGTCGCAGCCTCCGCAGGCCCTCCGCCCCCTCC
TCGTCTTCTAGCGACACTCTCCAGTCTGCTCAGGTGGACGCGCGCTGAGCCCGGAGTTGG
TCACCAGGAATCCTCAGAGCGATCAAAAAGCCTGCGGAGGACTCACCAACTTTATCGCGT
CCTCCCCGTGTCCCAGACACTGTCCTGAGGGCTTTCTGGGCATCACCCCTCCCTCCTGTG
ACCCCAACAGCAGCCCCGTTTAGCAGCTGGGGAAGCTGGGGTCCTCGGGGTTTAGGGAGC
TTGCTCGAGGTCACAGTGGTCACATGGGGAGGGGCCGAGCTGGGATTCAAACCTGGGAGG
GCTGACCTTGAACTTCTCTGCTGCCTTCCCCCTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTGGCCCAGCAGAGCCTGTACCTGCACAGGTACTACTTCGAGCTGGAGCTCTCCGGG
GCCGGCGTCTACGTAGGCCTGACGTGCAAAGGCATCGACCGGAAGGGCGAGGAACGCAAC
AGCTGCATTTCTGGAAACAGCTTCTCCTGGAGCCTCCACTGGGACGGGAAGGCGTTCAGG
GCGTGGCACAGCGACACGGAGACCCCGCTCAAGGCCAGCCCTTGCCGGAGGCTGGGGGTC
TACGTGGACTCTCCGGGCGGGGTCCTCTCCTTCTACGGCGTGGAGCCCGATGCCATGACT
CTGGTGCACAGGTTTGACTGCAGGTTCTCGGAGCCCGTCTACCCCGCCTTCTGGCTTTCC
AAGAAGGAGGACGCCATCCGGATTGTGGATCTGGGAGAGGAACTGGGAAAGCCGGCGCCC
ACCTCAGTGGAGGCTGCTCCCTAGAGGCCGGAATCCGCTTCCCGCAGATGGGACGGCAGC
CTGGTCCAAGGGGGTCCCTGCCAGTGGGAGCCGCCTTAGAAGTCGCGCGGGAAGGGTCTC
TGGCTGCCACACGGCGCTCTTCTCCACGGTCGCAGCCTCCGCAGGCCCTCCGCCCCCTCC
TCGTCTTCTAGCGACACTCTCCAGTCTGCTCAGGTGGACGCGCGCTGAGCCCGGAGTTGG
TCACCAGGAATCCTCAGAGCGATCAAAAAGCCTGCGGAGGACTCACCAACTTTATCGCGT
CCTCCCCGTGTCCCAGACACTGTCCTGAGGGCTTTCTGGGCATCACCCCTCCCTCCTGTG
ACCCCAACAGCAGCCCCGTTTAGCAGCTGGGGAAGCTGGGGTCCTCGGGGTTTAGGGAGC
TTGCTCGAGGTCACAGTGGTCACATGGGGAGGGGCCGAGCTGGGATTCAAACCTGGGAGG
GCTGACCTTGAACTTCTCTGCTGCCTTCCCCCTTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12407437|gb|AAG53507.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12407437|gb|AAG53507.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.539504

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.539504

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-445, gnl|bosTau2|chr19 (23549194-23548750)
               

               
               1-445, gnl|Hg17|chr17 (15473097-15472653)
               

               
               1-445, gnl|Mm7|chr11 (62922098-62922542)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-445, gnl|bosTau2|chr19 (23549194-23548750)
               

               
               1-445, gnl|Hg17|chr17 (15473097-15472653)
               

               
               1-445, gnl|Mm7|chr11 (62922098-62922542)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.267344)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

	1-445, gnl\|bosTau2\|chr19 (23549194-23548750)
	1-445, gnl\|Hg17\|chr17 (15473097-15472653)
	1-445, gnl\|Mm7\|chr11 (62922098-62922542)