Non-Coding RNA Search

Ss1.1-Utr1-UTR010014D10.5

Sequence:


               
               CCTGGATTTGGCAAAATATGATTCACTCCACCCTGGGGTGGGCCACTGGTCAGGTGGACG
GACCATAAATAGGGTCCCCCGGGCAGCCTTCTCACTCGCCTCCCCCTCCTTCAGCGGCTG
TCCGGAGGACCAGACTCCTCGGCCCTGCAACCATGGCCCTAAGTCTCCTGTGGCTGGGCC
TCACCCTGCTGGGGGCCCTGCAGACCCAGGCCCAGGGCACCATCCCCAACTGGATCCCGG
CACCCCCTCTGTCCAAGGTCCCGCTGCAGCCCAACTTCCAGGCTGACCAGTTCCAGGGGA
AGTGGTACGTCGTAGGCCTGGCGGGGAACGCAGTTAAGAAGGAAGAGCAAGGCCGGTTTA
AGATGTACACCACCACCTACGAGCTCAAAGAAGACGGCAGCTACAACGTCATCTCCACCC
TGCTCAGGGGCCAGCTCTGTGACAACTGGATCAGAACTTTTGTCCCAAGTCTCCAGCCGG
GCCAGTTCAAACTGGGTGATATTAAGAAATACTCTGGATTGCAGAGCTATGTCGTGCGTG
TGGTGTCTACTAACTATAGCCAGTTCGCCATAGTATTCTTCAAGAAGGTTTCCAACAACC
AAGAGTACTTCAAAACCACGCTTTACGGGAGGACCAAGGTGCTGTCCCCTGAGCTGAAGG
AGAACTTTGTCCGCTTTGCCAAGTCTCTGGGCCTCAGCGATGACAACATCATCTTCCCCG
TCGCAATCGACCAGTGCATCGACGGCCAGTGAGCATGCACGGCCTCCTGTCTCCCTCAGC
TCCCATCACCTTCATGTCTTCAGCCTTTGCCCATCATGCCACCCAGCTGTCCTCACCAGC
CTGGGTCCCCGTGGAAGGAGAGGGCCCAGAGATGCTTCTCATGGCACTGCCCACCAGCTG
CTCCCTGGGCTGCCCTGCTGATGGAGCCCCACCCTGCCTGCTAAATAAAGATATCCCCCC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGATTTGGCAAAATATGATTCACTCCACCCTGGGGTGGGCCACTGGTCAGGTGGACG
GACCATAAATAGGGTCCCCCGGGCAGCCTTCTCACTCGCCTCCCCCTCCTTCAGCGGCTG
TCCGGAGGACCAGACTCCTCGGCCCTGCAACCATGGCCCTAAGTCTCCTGTGGCTGGGCC
TCACCCTGCTGGGGGCCCTGCAGACCCAGGCCCAGGGCACCATCCCCAACTGGATCCCGG
CACCCCCTCTGTCCAAGGTCCCGCTGCAGCCCAACTTCCAGGCTGACCAGTTCCAGGGGA
AGTGGTACGTCGTAGGCCTGGCGGGGAACGCAGTTAAGAAGGAAGAGCAAGGCCGGTTTA
AGATGTACACCACCACCTACGAGCTCAAAGAAGACGGCAGCTACAACGTCATCTCCACCC
TGCTCAGGGGCCAGCTCTGTGACAACTGGATCAGAACTTTTGTCCCAAGTCTCCAGCCGG
GCCAGTTCAAACTGGGTGATATTAAGAAATACTCTGGATTGCAGAGCTATGTCGTGCGTG
TGGTGTCTACTAACTATAGCCAGTTCGCCATAGTATTCTTCAAGAAGGTTTCCAACAACC
AAGAGTACTTCAAAACCACGCTTTACGGGAGGACCAAGGTGCTGTCCCCTGAGCTGAAGG
AGAACTTTGTCCGCTTTGCCAAGTCTCTGGGCCTCAGCGATGACAACATCATCTTCCCCG
TCGCAATCGACCAGTGCATCGACGGCCAGTGAGCATGCACGGCCTCCTGTCTCCCTCAGC
TCCCATCACCTTCATGTCTTCAGCCTTTGCCCATCATGCCACCCAGCTGTCCTCACCAGC
CTGGGTCCCCGTGGAAGGAGAGGGCCCAGAGATGCTTCTCATGGCACTGCCCACCAGCTG
CTCCCTGGGCTGCCCTGCTGATGGAGCCCCACCCTGCCTGCTAAATAAAGATATCCCCCC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|631308|pir||JC2339

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|631308|pir||JC2339

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-277, - strand, RNAz p=0.866218

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-277, - strand, RNAz p=0.866218

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-290, gnl|bosTau2|chr11 (77637922-77638205)
               

               
               1-290, gnl|Hg17|chr9 (127991216-127991496)
               

               
               1-290, gnl|Mm7|chr2 (32395171-32394891)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chr11 (77637922-77638205)
               

               
               1-290, gnl|Hg17|chr9 (127991216-127991496)
               

               
               1-290, gnl|Mm7|chr2 (32395171-32394891)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cga (0.837287)
               

               
               nmm (0.664011)
               

               
               nbm (0.595948)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.837287)
               

               
               nmm (0.664011)
               

               
               nbm (0.595948)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	1-290, gnl\|bosTau2\|chr11 (77637922-77638205)
	1-290, gnl\|Hg17\|chr9 (127991216-127991496)
	1-290, gnl\|Mm7\|chr2 (32395171-32394891)

	cga (0.837287)
	nmm (0.664011)
	nbm (0.595948)
	col (0.195008)
	nlu (0.191681)
	cut (0.169924)
	pty (0.142714)
	ute (0.132784)
	cov (0.132153)
	cly (0.120642)
	med (0.116252)