Ss1.1-Utr1-UTR010015D09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTTCTCCCTCGGCGTCCGCGACCATGGCGGCGGCCGCCTGCACGGCCGCGGGCGGAGG TCTGCTGCGGGCAGGCATTGAGCGGCTGCTGCGAGGAGGAGTTCGGGCGCTCCTCCGGCC GCGACTTGAAGGGGTCACCCCCCGCTCGGAGCGCGCCTTCAGCCTCTCTCTCAGTCGGAG CACGGTCATTGTGGAGCGTTGGTGGAAGGTGCCGCTAGCCGGAGAGGGCCGGAAGCCGCG TCTGCATCGGCGACACCGCGTCTACAAGCTAGTGGAGGACACGAAACATCGGCCCAAAGA CAATCTGGAGCTCGTCCTCACGCAGTCGGTGGAAGAACTTGGAGTCCGAGGTGACCTCGT CTCAGTGAAAAAATCTGTGGGCCGTAATCGGCTACTTCCTCAAGGACTGGCTGTATATGC ATCTCCTGAAAACAAGAAGCTGTTTGAAGAGGAGAAATTGCTGAGACAAGAGGGAAAATT AGAGAAACTCCAGACCAAGGCAGGTGAGGCGACAGTGAAATTTCTGAGAAGATGTCACTT GGAGGTAGGGATGAAGAACAATGTCAAATGGGAGCTAAACCCTGAAATAGTTGCCCGCCA CTTCCTCAGAAATCTTGGTGTTGTGGTTGCCCCACATGCGTTAAAGTTACCAGAAGAGCC CATCACACAGAGGGGCGAGTACTGGTGTGAGGTGACGGTAAATGGACTTGACACTGTGAG GGTACCTATGTCTGTGGTGAACTTTGAGAGGCCCAAGACCAAAAGATACAAGTACTGGTT AGCCCAGCAGGCTGCCAAGGGAGATGTCCCCACCAGCTCCCAGATGATCTGAACCTCTTC TCACCTCAAAAACAGTGACGCAGAATCAGAGGAATGGCGGAGCAGAAATGGGCCAGCCCT GTGATATCACTGCCAGCTCTTACCAAGTACGGAATTTTAGACAGCATGTGGGGACAGTGG ATTAGACTGTGAATTGTCCATATTTGCAGTCTTCATCTTCAGTGGTTGGTTATCACATCT GACCTTATCGGGGCAGTCCTACTCCAGAAGTTTGATAAACTGAATATTAATAGACTGAAT ATTAATAGACTAAAAGAGTTTAGATCCTACATAGCCTCTTCATCCATTGGAATTCATTGG AACAAATGGTAAAGCTGGCTCATTCTCATCATCCAAACTGAACATTTGTATCTCAAGAAA AAATAAAGAGGTTGTGTTATTTTTAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTTCTCCCTCGGCGTCCGCGACCATGGCGGCGGCCGCCTGCACGGCCGCGGGCGGAGG TCTGCTGCGGGCAGGCATTGAGCGGCTGCTGCGAGGAGGAGTTCGGGCGCTCCTCCGGCC GCGACTTGAAGGGGTCACCCCCCGCTCGGAGCGCGCCTTCAGCCTCTCTCTCAGTCGGAG CACGGTCATTGTGGAGCGTTGGTGGAAGGTGCCGCTAGCCGGAGAGGGCCGGAAGCCGCG TCTGCATCGGCGACACCGCGTCTACAAGCTAGTGGAGGACACGAAACATCGGCCCAAAGA CAATCTGGAGCTCGTCCTCACGCAGTCGGTGGAAGAACTTGGAGTCCGAGGTGACCTCGT CTCAGTGAAAAAATCTGTGGGCCGTAATCGGCTACTTCCTCAAGGACTGGCTGTATATGC ATCTCCTGAAAACAAGAAGCTGTTTGAAGAGGAGAAATTGCTGAGACAAGAGGGAAAATT AGAGAAACTCCAGACCAAGGCAGGTGAGGCGACAGTGAAATTTCTGAGAAGATGTCACTT GGAGGTAGGGATGAAGAACAATGTCAAATGGGAGCTAAACCCTGAAATAGTTGCCCGCCA CTTCCTCAGAAATCTTGGTGTTGTGGTTGCCCCACATGCGTTAAAGTTACCAGAAGAGCC CATCACACAGAGGGGCGAGTACTGGTGTGAGGTGACGGTAAATGGACTTGACACTGTGAG GGTACCTATGTCTGTGGTGAACTTTGAGAGGCCCAAGACCAAAAGATACAAGTACTGGTT AGCCCAGCAGGCTGCCAAGGGAGATGTCCCCACCAGCTCCCAGATGATCTGAACCTCTTC TCACCTCAAAAACAGTGACGCAGAATCAGAGGAATGGCGGAGCAGAAATGGGCCAGCCCT GTGATATCACTGCCAGCTCTTACCAAGTACGGAATTTTAGACAGCATGTGGGGACAGTGG ATTAGACTGTGAATTGTCCATATTTGCAGTCTTCATCTTCAGTGGTTGGTTATCACATCT GACCTTATCGGGGCAGTCCTACTCCAGAAGTTTGATAAACTGAATATTAATAGACTGAAT ATTAATAGACTAAAAGAGTTTAGATCCTACATAGCCTCTTCATCCATTGGAATTCATTGG AACAAATGGTAAAGCTGGCTCATTCTCATCATCCAAACTGAACATTTGTATCTCAAGAAA AAATAAAGAGGTTGTGTTATTTTTAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 258-895, - strand, RNAz p=0.846905 | |
| 403-508, - strand, RNAz p=0.964305 | |
| 789-908, - strand, RNAz p=0.998165 | |
| 1061-1160, + strand, RNAz p=0.852756 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 258-895, - strand, RNAz p=0.846905 | |
| 403-508, - strand, RNAz p=0.964305 | |
| 789-908, - strand, RNAz p=0.998165 | |
| 1061-1160, + strand, RNAz p=0.852756 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 70-508, gnl|bosTau2|chr12 (46034235-46033777) | |
| 511-613, gnl|bosTau2|chr3 (15080275-15080377) | |
| 511-613, gnl|canFam2|chr12 (29295907-29296009) | |
| 511-613, gnl|canFam2|chr17 (63861888-63862012) | |
| 511-613, gnl|dasNov1|scaffold_3934 (41310-41411) | |
| 511-613, gnl|dasNov1|scaffold_3934 (41303-41427) | |
| 511-613, gnl|echTel1|scaffold_323196 (6267-6166) | |
| 511-613, gnl|echTel1|scaffold_323196 (6274-6149) | |
| 511-613, gnl|hg17|chr1 (148546994-148547118) | |
| 511-613, gnl|Hg17|chr1 (148547102-148547000) | |
| 511-613, gnl|hg17|chr8 (77678233-77678335) | |
| 511-613, gnl|loxAfr1|scaffold_2110 (36417-36541) | |
| 511-613, gnl|loxAfr1|scaffold_27010 (2111-2006) | |
| 511-613, gnl|mm7|chr3 (94320687-94320586) | |
| 511-613, gnl|mm7|chr3 (94320694-94320570) | |
| 511-613, gnl|Mm7|chr3 (94320584-94320686) | |
| 511-613, gnl|monDom2|scaffold_44 (5052879-5052980) | |
| 511-613, gnl|monDom2|scaffold_44 (5052872-5053004) | |
| 511-613, gnl|oryCun1|scaffold_116673 (6615-6488) | |
| 511-613, gnl|oryCun1|scaffold_203793 (11942-12044) | |
| 511-613, gnl|panTro1|chr1 (130300107-130300231) | |
| 511-613, gnl|panTro1|chr7 (79751699-79751801) | |
| 511-613, gnl|rheMac2|chr1 (130211013-130211137) | |
| 511-613, gnl|rheMac2|chr8 (79071865-79071967) | |
| 511-613, gnl|rn3|chr2 (189370790-189370689) | |
| 511-613, gnl|rn3|chr2 (189370797-189370673) | |
| 697-1225, gnl|bosTau2|chr3 (15083496-15084028) | |
| 697-1225, gnl|Hg17|chr1 (148545731-148545193) | |
| 697-1225, gnl|Mm7|chr3 (94321734-94322210) | |
| 709-1205, gnl|bosTau2|chr12 (46032805-46032308) | |
| 709-1205, gnl|Hg17|chr8 (77678137-77677627) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 70-508, gnl|bosTau2|chr12 (46034235-46033777) | |
| 511-613, gnl|bosTau2|chr3 (15080275-15080377) | |
| 511-613, gnl|canFam2|chr12 (29295907-29296009) | |
| 511-613, gnl|canFam2|chr17 (63861888-63862012) | |
| 511-613, gnl|dasNov1|scaffold_3934 (41310-41411) | |
| 511-613, gnl|dasNov1|scaffold_3934 (41303-41427) | |
| 511-613, gnl|echTel1|scaffold_323196 (6267-6166) | |
| 511-613, gnl|echTel1|scaffold_323196 (6274-6149) | |
| 511-613, gnl|hg17|chr1 (148546994-148547118) | |
| 511-613, gnl|Hg17|chr1 (148547102-148547000) | |
| 511-613, gnl|hg17|chr8 (77678233-77678335) | |
| 511-613, gnl|loxAfr1|scaffold_2110 (36417-36541) | |
| 511-613, gnl|loxAfr1|scaffold_27010 (2111-2006) | |
| 511-613, gnl|mm7|chr3 (94320687-94320586) | |
| 511-613, gnl|mm7|chr3 (94320694-94320570) | |
| 511-613, gnl|Mm7|chr3 (94320584-94320686) | |
| 511-613, gnl|monDom2|scaffold_44 (5052879-5052980) | |
| 511-613, gnl|monDom2|scaffold_44 (5052872-5053004) | |
| 511-613, gnl|oryCun1|scaffold_116673 (6615-6488) | |
| 511-613, gnl|oryCun1|scaffold_203793 (11942-12044) | |
| 511-613, gnl|panTro1|chr1 (130300107-130300231) | |
| 511-613, gnl|panTro1|chr7 (79751699-79751801) | |
| 511-613, gnl|rheMac2|chr1 (130211013-130211137) | |
| 511-613, gnl|rheMac2|chr8 (79071865-79071967) | |
| 511-613, gnl|rn3|chr2 (189370790-189370689) | |
| 511-613, gnl|rn3|chr2 (189370797-189370673) | |
| 697-1225, gnl|bosTau2|chr3 (15083496-15084028) | |
| 697-1225, gnl|Hg17|chr1 (148545731-148545193) | |
| 697-1225, gnl|Mm7|chr3 (94321734-94322210) | |
| 709-1205, gnl|bosTau2|chr12 (46032805-46032308) | |
| 709-1205, gnl|Hg17|chr8 (77678137-77677627) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| med (0.348756) | |
| spl (0.286369) | |
| ste (0.270416) | |
| cov (0.264306) | |
| pgl (0.236967) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.348756) | |
| spl (0.286369) | |
| ste (0.270416) | |
| cov (0.264306) | |
| pgl (0.236967) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |