Non-Coding RNA Search

Ss1.1-Utr1-UTR010015F12.5

Sequence:


               
               AAGCACTGCATCAGTGGGAGTTCTTGGCTTATGTTAGTTTATGTATGAAGATATCAAAGA
TTTTTTGACTATATTATCAGTTAAGCAAAAAGAGGAGTCAGATTTAATTTGTTTTTGAAG
CACTTTGAGAAGAGAAATTAATTTTAAGTAACTTAATGAGCAAATTTTTGATTACTACTT
TGTGTTCAATACCAGTCTTTCGTTTCTCTGGATTATTTTATGGATCATTTGACAGAGAAT
TTGGGGATATAAATCTGTAGCAGGTGTCTGACACCAGTCGGTCTCTTTATTTCTGGGAAA
TGTGTACGTGTAACTTTCAGATATACAGTGTTCCTGAGTAAGATCAATTTTAGGGGATTT
GTGTAGTGTCTAGAAAAGTAGCCCATATCTTTCAATACTAAAAGGAAGCTGCAGGTGTTG
AGAAGTCCAGTGGAGAAAACCTCAATGCTTCCCGTTATCACTTACTGATTCCTACCGGTT
TCTAGGTTCTGGGGACGTTGTTTAAACTAACTTCCTTAAAACTCTTGCTAGCAGGTTCCG
CTTAGGACCTGATAATATTCAGAAAAGTTTTTTTGGAATTTAGAACTTTTTCCTCCTTCT
GTTCTTGGAGGAATCGCCTCTGTTGTCTTCTGTCGTCTCGGTCTCGTTTGTCACGGTGCA
GCTTCACCCCTCAGGTATTAACGGGGCAGGTGGCAGAGCTCCTTGCACGTGCTCACCCCC
CTTTGCCCGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCAGAATCCTTGGCCCCC
CAAGGAGGGGCTCGGAGCACTTTACAGCCGCACCCTGTCCTGCCAGGGTCTCCATGCTGG
GGTGTGAGACCCCCGCCCCGAAGGAAGGCCACGCCGAGACCCTGGGTCTGGGAAGTGCCG
GAGAGAGTGGGCCACCTCTCTGATTCCCACTTTCTTTCGTTTGGAGTCTTTCCAAGAGGT
TCAGAGACTGAATCTTCAGCTGTCTTCTTGGAAGACCCGCAACAGTCCTCTCAGTCTTAA
GGAAAAAGTAACAGCACAGCACATTTCCCACGTTTCTCCATCGTGAAGCTTACTTTTAGT
AACTTATTTATGATGTTGGTTCTCACTGTCCCGGCCTCGTCTTTGGGGGCTGACCTTCCC
GTGGGTCTGAGCAGTGTCGTTGGGTGGCGGTCACTGCCTCAGGGGTTGGTGTGCACAAGC
GCTCGGCAGGGCTGCCGTCGCCTTCCAGGGAAACCTAATTTCCGTTTTTACAAGTAGGGG
CCTCGGAGCTGGTCTGGCTCTGCTGTAGAAGTTCACCGCGTGGGTCGGCGCAGTCCACAC
GCTGCCGGCCACTCGGAAGAGGCTGCGTTCAGTAAAACTTTCAGCTTGAGCTTATGCAAT
GATTGGTAACGATTTTGGCATTGTAAGAATTAGGAAATGATCGTAGAAATATATGTAAAG
TACTCAATTTTCAATCATTTTTCAAATTACTGTTTTAAATTGTTTTGCTGAGTTGTAATA
CTTTTGAGATACAATGTATTCCTTGTACTGAAAGAATGAAAAAAAAGGACTTTTTCAGCA
TTTGAGGTAAGTTCTTTAACGTTTCATTAAAAACATTTTTTACAAATATTTTGTACATGC
ACTTGCAGTATTGAGGTTAATCATTTTAATAAATTCGGAAATTGAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCACTGCATCAGTGGGAGTTCTTGGCTTATGTTAGTTTATGTATGAAGATATCAAAGA
TTTTTTGACTATATTATCAGTTAAGCAAAAAGAGGAGTCAGATTTAATTTGTTTTTGAAG
CACTTTGAGAAGAGAAATTAATTTTAAGTAACTTAATGAGCAAATTTTTGATTACTACTT
TGTGTTCAATACCAGTCTTTCGTTTCTCTGGATTATTTTATGGATCATTTGACAGAGAAT
TTGGGGATATAAATCTGTAGCAGGTGTCTGACACCAGTCGGTCTCTTTATTTCTGGGAAA
TGTGTACGTGTAACTTTCAGATATACAGTGTTCCTGAGTAAGATCAATTTTAGGGGATTT
GTGTAGTGTCTAGAAAAGTAGCCCATATCTTTCAATACTAAAAGGAAGCTGCAGGTGTTG
AGAAGTCCAGTGGAGAAAACCTCAATGCTTCCCGTTATCACTTACTGATTCCTACCGGTT
TCTAGGTTCTGGGGACGTTGTTTAAACTAACTTCCTTAAAACTCTTGCTAGCAGGTTCCG
CTTAGGACCTGATAATATTCAGAAAAGTTTTTTTGGAATTTAGAACTTTTTCCTCCTTCT
GTTCTTGGAGGAATCGCCTCTGTTGTCTTCTGTCGTCTCGGTCTCGTTTGTCACGGTGCA
GCTTCACCCCTCAGGTATTAACGGGGCAGGTGGCAGAGCTCCTTGCACGTGCTCACCCCC
CTTTGCCCGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCAGAATCCTTGGCCCCC
CAAGGAGGGGCTCGGAGCACTTTACAGCCGCACCCTGTCCTGCCAGGGTCTCCATGCTGG
GGTGTGAGACCCCCGCCCCGAAGGAAGGCCACGCCGAGACCCTGGGTCTGGGAAGTGCCG
GAGAGAGTGGGCCACCTCTCTGATTCCCACTTTCTTTCGTTTGGAGTCTTTCCAAGAGGT
TCAGAGACTGAATCTTCAGCTGTCTTCTTGGAAGACCCGCAACAGTCCTCTCAGTCTTAA
GGAAAAAGTAACAGCACAGCACATTTCCCACGTTTCTCCATCGTGAAGCTTACTTTTAGT
AACTTATTTATGATGTTGGTTCTCACTGTCCCGGCCTCGTCTTTGGGGGCTGACCTTCCC
GTGGGTCTGAGCAGTGTCGTTGGGTGGCGGTCACTGCCTCAGGGGTTGGTGTGCACAAGC
GCTCGGCAGGGCTGCCGTCGCCTTCCAGGGAAACCTAATTTCCGTTTTTACAAGTAGGGG
CCTCGGAGCTGGTCTGGCTCTGCTGTAGAAGTTCACCGCGTGGGTCGGCGCAGTCCACAC
GCTGCCGGCCACTCGGAAGAGGCTGCGTTCAGTAAAACTTTCAGCTTGAGCTTATGCAAT
GATTGGTAACGATTTTGGCATTGTAAGAATTAGGAAATGATCGTAGAAATATATGTAAAG
TACTCAATTTTCAATCATTTTTCAAATTACTGTTTTAAATTGTTTTGCTGAGTTGTAATA
CTTTTGAGATACAATGTATTCCTTGTACTGAAAGAATGAAAAAAAAGGACTTTTTCAGCA
TTTGAGGTAAGTTCTTTAACGTTTCATTAAAAACATTTTTTACAAATATTTTGTACATGC
ACTTGCAGTATTGAGGTTAATCATTTTAATAAATTCGGAAATTGAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1055-1168, - strand, RNAz p=0.683978
               

               
               1522-1637, - strand, RNAz p=0.629166

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1055-1168, - strand, RNAz p=0.683978
               

               
               1522-1637, - strand, RNAz p=0.629166

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1667, gnl|bosTau2|chr29 (39399981-39401656)
               

               
               1-1667, gnl|Hg17|chr11 (67680581-67678909)
               

               
               1-1667, gnl|Mm7|chr19 (3711504-3713106)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1667, gnl|bosTau2|chr29 (39399981-39401656)
               

               
               1-1667, gnl|Hg17|chr11 (67680581-67678909)
               

               
               1-1667, gnl|Mm7|chr19 (3711504-3713106)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               cte (0.58548)
               

               
               pro (0.512033)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               cut (0.339847)
               

               
               cbe (0.239234)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               pro (0.512033)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               cut (0.339847)
               

               
               cbe (0.239234)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1055-1168, - strand, RNAz p=0.683978
	1522-1637, - strand, RNAz p=0.629166

	1-1667, gnl\|bosTau2\|chr29 (39399981-39401656)
	1-1667, gnl\|Hg17\|chr11 (67680581-67678909)
	1-1667, gnl\|Mm7\|chr19 (3711504-3713106)

	cte (0.58548)
	pro (0.512033)
	lyg (0.399308)
	aor (0.390549)
	elu (0.385356)
	sto (0.359648)
	cut (0.339847)
	cbe (0.239234)
	sin (0.174948)
	fhi (0.169578)
	cki (0.165235)
	cje (0.165235)
	ski (0.146735)
	lnt (0.142308)
	cst (0.140036)
	che (0.136314)
	ssp (0.13552)
	kid (0.129735)
	thg (0.126791)
	tra (0.123092)
	spc (0.113366)
	cty (0.10408)