Ss1.1-Utr1-UTR010015G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACCGACCCTGAGCTGCCGGGCCTAAGCCGAGCTAAATTCGTTGCCGGGGGCCTCTGCG GTGCAACCACAAAAGCTAATCCGAAGGAGGGGGTAGGGTTGTGGGGTCGATGCTTCCTCT TCCAATTCAGGTCGGCTCCGGTTACCGTCTCACCCTTCGCCGTTTGCGGCTCCCGGGGCG TTTGCATGCGCTCTTTCGTGCGGGGAAGCTCCGGTGACCATGTAGGGGAAAGCGGGAGGA AGCTCCAGCTGCCTGAGGGGAGGTCGGCGCGGTCGGCACGCCGCCTGGCACCCACCGCCT CGCGGGCCGCTGGCCCAGGTGGGAGCCCGGCCTGCAGTCGCGGCCTGACCCGGAGCGCCG CCAAGTCTCGCGCCGTCTCGCGAGAGTCCAAGTTGAAGGAACATGGCGACGTCTAATCTG TTAAAGAATAAAGGTTCTCTTCAGTTTGAAGACAAATGGGATTTCATGCGTCCAATTGTT TTGAAGCTTTTACGCCAGGAATCTGTTACAAAGCAGCAGTGGTTTGACCTGTTTTCGGAT GTACATGCAGTCTGTCTCTGGGATGATAAAGGCCCAGCAAAAATCCATCAGGCTTTAAAA GAAGATATTCTTGAATTCATTAAGCAAGCACAGGCACGAGTATTGAGCCATCAAGATGAC ACAGCTTTACTAAAAGCTTATATTGTTGAATGGCGAAAATTCTTTACACAGTGTGATATT TTACCGAAGCCTTTTTGTCAGCTAGAGATTACTTTAATGGGTAAACAGGGCAGCAATAAA AAATCAAATGTAGAAGACAGTATTGTTCGAAAGCTCATGCTTGATACGTGGAATGAGTCA ATCTTTTCAAATATAAAAAACAGACCACAAGATAGTGCAATGAAGCTGGTACATGCTGAA AGATTAGGGGAAGCTTTTGATTCTCAGCTTGTCATTGGAGTAAGAGAATCCTATGTTAAC CTTTGTTCTAATCCAGAGGATAAGCTTCAAATTTATAGGGACAATTTTGAGAAGGCATAC TTGGATTCAACAGAGAGATTTTATAGAACACAGGCACCCTCGTATTTACAACAAAATGGT GTACAGAATTATATGAAATATGCAGACGCTAAATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACCGACCCTGAGCTGCCGGGCCTAAGCCGAGCTAAATTCGTTGCCGGGGGCCTCTGCG GTGCAACCACAAAAGCTAATCCGAAGGAGGGGGTAGGGTTGTGGGGTCGATGCTTCCTCT TCCAATTCAGGTCGGCTCCGGTTACCGTCTCACCCTTCGCCGTTTGCGGCTCCCGGGGCG TTTGCATGCGCTCTTTCGTGCGGGGAAGCTCCGGTGACCATGTAGGGGAAAGCGGGAGGA AGCTCCAGCTGCCTGAGGGGAGGTCGGCGCGGTCGGCACGCCGCCTGGCACCCACCGCCT CGCGGGCCGCTGGCCCAGGTGGGAGCCCGGCCTGCAGTCGCGGCCTGACCCGGAGCGCCG CCAAGTCTCGCGCCGTCTCGCGAGAGTCCAAGTTGAAGGAACATGGCGACGTCTAATCTG TTAAAGAATAAAGGTTCTCTTCAGTTTGAAGACAAATGGGATTTCATGCGTCCAATTGTT TTGAAGCTTTTACGCCAGGAATCTGTTACAAAGCAGCAGTGGTTTGACCTGTTTTCGGAT GTACATGCAGTCTGTCTCTGGGATGATAAAGGCCCAGCAAAAATCCATCAGGCTTTAAAA GAAGATATTCTTGAATTCATTAAGCAAGCACAGGCACGAGTATTGAGCCATCAAGATGAC ACAGCTTTACTAAAAGCTTATATTGTTGAATGGCGAAAATTCTTTACACAGTGTGATATT TTACCGAAGCCTTTTTGTCAGCTAGAGATTACTTTAATGGGTAAACAGGGCAGCAATAAA AAATCAAATGTAGAAGACAGTATTGTTCGAAAGCTCATGCTTGATACGTGGAATGAGTCA ATCTTTTCAAATATAAAAAACAGACCACAAGATAGTGCAATGAAGCTGGTACATGCTGAA AGATTAGGGGAAGCTTTTGATTCTCAGCTTGTCATTGGAGTAAGAGAATCCTATGTTAAC CTTTGTTCTAATCCAGAGGATAAGCTTCAAATTTATAGGGACAATTTTGAGAAGGCATAC TTGGATTCAACAGAGAGATTTTATAGAACACAGGCACCCTCGTATTTACAACAAAATGGT GTACAGAATTATATGAAATATGCAGACGCTAAATTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-426, gnl|bosTau2|chr15 (6141501-6141060) | |
| 1-426, gnl|Hg17|chr11 (107384866-107385308) | |
| 1-426, gnl|Mm7|chr9 (53646159-53645721) | |
| 637-813, gnl|bosTau2|chr15 (6075861-6075685) | |
| 637-813, gnl|canFam2|chr5 (27451971-27451777) | |
| 637-813, gnl|danRer3|chr21 (14737195-14737394) | |
| 637-813, gnl|dasNov1|scaffold_27484 (9243-9048) | |
| 637-813, gnl|fr1|chrUn (102802448-102802633) | |
| 637-813, gnl|galGal2|chr1 (172337960-172337752) | |
| 637-813, gnl|hg17|chr11 (107425823-107426018) | |
| 637-813, gnl|Hg17|chr11 (107425827-107426003) | |
| 637-813, gnl|loxAfr1|scaffold_3358 (107015-107209) | |
| 637-813, gnl|mm7|chr9 (53625532-53625339) | |
| 637-813, gnl|Mm7|chr9 (53625526-53625350) | |
| 637-813, gnl|monDom2|scaffold_2 (134916390-134916195) | |
| 637-813, gnl|oryCun1|scaffold_166385 (17889-17690) | |
| 637-813, gnl|panTro1|chr9 (109383675-109383870) | |
| 637-813, gnl|rheMac2|chr14 (106630488-106630683) | |
| 637-813, gnl|rn3|chr8 (57132945-57132752) | |
| 637-813, gnl|tetNig1|chrUn_random (29616259-29616442) | |
| 637-813, gnl|xenTro1|scaffold_812 (321871-321677) | |
| 955-1102, gnl|bosTau2|chr15 (6072960-6072813) | |
| 955-1102, gnl|canFam2|chr5 (27448226-27448051) | |
| 955-1102, gnl|danRer3|chr21 (14737705-14737880) | |
| 955-1102, gnl|dasNov1|scaffold_27484 (4715-4540) | |
| 955-1102, gnl|echTel1|scaffold_37443 (1431-1606) | |
| 955-1102, gnl|fr1|chrUn (102803319-102803508) | |
| 955-1102, gnl|galGal2|chr1 (172334263-172334094) | |
| 955-1102, gnl|hg17|chr11 (107430582-107430757) | |
| 955-1102, gnl|Hg17|chr11 (107430583-107430730) | |
| 955-1102, gnl|loxAfr1|scaffold_3358 (112716-112891) | |
| 955-1102, gnl|mm7|chr9 (53621513-53621338) | |
| 955-1102, gnl|Mm7|chr9 (53621510-53621363) | |
| 955-1102, gnl|monDom2|scaffold_2 (134906045-134905870) | |
| 955-1102, gnl|oryCun1|scaffold_166385 (11868-11697) | |
| 955-1102, gnl|panTro1|chr9 (109388416-109388591) | |
| 955-1102, gnl|rheMac2|chr14 (106635339-106635514) | |
| 955-1102, gnl|rn3|chr8 (57129544-57129369) | |
| 955-1102, gnl|tetNig1|chrUn_random (29616898-29617057) | |
| 955-1102, gnl|xenTro1|scaffold_812 (320237-320056) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-426, gnl|bosTau2|chr15 (6141501-6141060) | |
| 1-426, gnl|Hg17|chr11 (107384866-107385308) | |
| 1-426, gnl|Mm7|chr9 (53646159-53645721) | |
| 637-813, gnl|bosTau2|chr15 (6075861-6075685) | |
| 637-813, gnl|canFam2|chr5 (27451971-27451777) | |
| 637-813, gnl|danRer3|chr21 (14737195-14737394) | |
| 637-813, gnl|dasNov1|scaffold_27484 (9243-9048) | |
| 637-813, gnl|fr1|chrUn (102802448-102802633) | |
| 637-813, gnl|galGal2|chr1 (172337960-172337752) | |
| 637-813, gnl|hg17|chr11 (107425823-107426018) | |
| 637-813, gnl|Hg17|chr11 (107425827-107426003) | |
| 637-813, gnl|loxAfr1|scaffold_3358 (107015-107209) | |
| 637-813, gnl|mm7|chr9 (53625532-53625339) | |
| 637-813, gnl|Mm7|chr9 (53625526-53625350) | |
| 637-813, gnl|monDom2|scaffold_2 (134916390-134916195) | |
| 637-813, gnl|oryCun1|scaffold_166385 (17889-17690) | |
| 637-813, gnl|panTro1|chr9 (109383675-109383870) | |
| 637-813, gnl|rheMac2|chr14 (106630488-106630683) | |
| 637-813, gnl|rn3|chr8 (57132945-57132752) | |
| 637-813, gnl|tetNig1|chrUn_random (29616259-29616442) | |
| 637-813, gnl|xenTro1|scaffold_812 (321871-321677) | |
| 955-1102, gnl|bosTau2|chr15 (6072960-6072813) | |
| 955-1102, gnl|canFam2|chr5 (27448226-27448051) | |
| 955-1102, gnl|danRer3|chr21 (14737705-14737880) | |
| 955-1102, gnl|dasNov1|scaffold_27484 (4715-4540) | |
| 955-1102, gnl|echTel1|scaffold_37443 (1431-1606) | |
| 955-1102, gnl|fr1|chrUn (102803319-102803508) | |
| 955-1102, gnl|galGal2|chr1 (172334263-172334094) | |
| 955-1102, gnl|hg17|chr11 (107430582-107430757) | |
| 955-1102, gnl|Hg17|chr11 (107430583-107430730) | |
| 955-1102, gnl|loxAfr1|scaffold_3358 (112716-112891) | |
| 955-1102, gnl|mm7|chr9 (53621513-53621338) | |
| 955-1102, gnl|Mm7|chr9 (53621510-53621363) | |
| 955-1102, gnl|monDom2|scaffold_2 (134906045-134905870) | |
| 955-1102, gnl|oryCun1|scaffold_166385 (11868-11697) | |
| 955-1102, gnl|panTro1|chr9 (109388416-109388591) | |
| 955-1102, gnl|rheMac2|chr14 (106635339-106635514) | |
| 955-1102, gnl|rn3|chr8 (57129544-57129369) | |
| 955-1102, gnl|tetNig1|chrUn_random (29616898-29617057) | |
| 955-1102, gnl|xenTro1|scaffold_812 (320237-320056) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| hlv (0.139256) | |
| ova (0.129132) |