Non-Coding RNA Search

Ss1.1-Utr1-UTR010016A05.5

Sequence:


               
               CTTGTTGGCCTACTGGTTGTAGAGTGCTTGGCCTGCCTACCTTCCTCCTTGACTGAAGTT
ACCTGATACTTTTTTTTTCCTTCAAGAAGAAAAAGTAATTCCCTGTTACCTCAGTTACTT
AGAGTAACTCCAGTCTCAAAGTATAGTCTTCTTCCTTTGGGACGGTTTTCCCACTTTGTA
TGATGCAGAAGGCTTGGCCTCTTCCTTGTCATTGTCTTTGCATGCCCTGTACCAGAGATG
TAGAGACTGCTGCAGGCAAAGGTGCTCAAAGTTCTTTTTTTTTAATGTTCTAATTAAGGA
AAGAAAAAAGATTCACTTAAAGGGAAGCATTCACAGTATCAGTAGTTTTTCCTCCATGGA
TCGTCTGCTTAAGTTGGAGAGTTGAGTCTTGACTGGGGAACAGATCTGAGATACAGGAAG
GGCCATCGTGCTATTTGGGGAAAACATTTGCTGTAACTAGGTTTAGGGTATGTATGCCCT
GCCAGTGCTTGGGACCTGTCTTTGTCAAGTGATTTCCCTGACACAGGGATTAGCCAGTCA
TGTGAAACATTTGATTAAGAGACTTAGAGAAATCTTTCCTAAGGGCAGGGTTGGTAGCTA
TAGCTGGGCTGGCCCCCTCCTCAGCCTGATGATTCTTTCCTCAGAGTGTATGTGAGTTTG
TAGTGATAAGTCATGGGATATGGTTTTAGAATCCAATGGATAATCTTTTTCAAAATCAAA
ATTCTGATAGATACATTGTTAACTAAGCCCTTTAAAGTTTCTGCCTAACTCAGGAATCTT
TTTTCTCAGAGCTATACCACAGCTGCTCTGATTTTGGAAGGAGACAAGATATGTTATCAA
TAAAAATTGCCTCTGGAGTTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGTTGGCCTACTGGTTGTAGAGTGCTTGGCCTGCCTACCTTCCTCCTTGACTGAAGTT
ACCTGATACTTTTTTTTTCCTTCAAGAAGAAAAAGTAATTCCCTGTTACCTCAGTTACTT
AGAGTAACTCCAGTCTCAAAGTATAGTCTTCTTCCTTTGGGACGGTTTTCCCACTTTGTA
TGATGCAGAAGGCTTGGCCTCTTCCTTGTCATTGTCTTTGCATGCCCTGTACCAGAGATG
TAGAGACTGCTGCAGGCAAAGGTGCTCAAAGTTCTTTTTTTTTAATGTTCTAATTAAGGA
AAGAAAAAAGATTCACTTAAAGGGAAGCATTCACAGTATCAGTAGTTTTTCCTCCATGGA
TCGTCTGCTTAAGTTGGAGAGTTGAGTCTTGACTGGGGAACAGATCTGAGATACAGGAAG
GGCCATCGTGCTATTTGGGGAAAACATTTGCTGTAACTAGGTTTAGGGTATGTATGCCCT
GCCAGTGCTTGGGACCTGTCTTTGTCAAGTGATTTCCCTGACACAGGGATTAGCCAGTCA
TGTGAAACATTTGATTAAGAGACTTAGAGAAATCTTTCCTAAGGGCAGGGTTGGTAGCTA
TAGCTGGGCTGGCCCCCTCCTCAGCCTGATGATTCTTTCCTCAGAGTGTATGTGAGTTTG
TAGTGATAAGTCATGGGATATGGTTTTAGAATCCAATGGATAATCTTTTTCAAAATCAAA
ATTCTGATAGATACATTGTTAACTAAGCCCTTTAAAGTTTCTGCCTAACTCAGGAATCTT
TTTTCTCAGAGCTATACCACAGCTGCTCTGATTTTGGAAGGAGACAAGATATGTTATCAA
TAAAAATTGCCTCTGGAGTTCCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               17-134, - strand, RNAz p=0.559839
               

               
               40-148, - strand, RNAz p=0.993028

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               17-134, - strand, RNAz p=0.559839
               

               
               40-148, - strand, RNAz p=0.993028

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               17-148, gnl|bosTau2|chr7 (60517775-60517907)
               

               
               17-148, gnl|canFam2|chr3 (14289924-14289786)
               

               
               17-148, gnl|dasNov1|scaffold_3343 (62298-62422)
               

               
               17-148, gnl|echTel1|scaffold_317121 (27681-27810)
               

               
               17-148, gnl|hg17|chr5 (98155160-98155280)
               

               
               17-148, gnl|Hg17|chr5 (98155194-98155322)
               

               
               17-148, gnl|loxAfr1|scaffold_191050 (960-845)
               

               
               17-148, gnl|mm7|chr17 (14045558-14045427)
               

               
               17-148, gnl|oryCun1|scaffold_60237 (500-408)
               

               
               17-148, gnl|panTro1|chr4 (103925874-103925992)
               

               
               17-148, gnl|rheMac2|chr6 (95035006-95035123)
               


               
               155-852, gnl|bosTau2|chr7 (60517951-60518684)
               

               
               155-852, gnl|Hg17|chr5 (98155334-98156048)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-148, gnl|bosTau2|chr7 (60517775-60517907)
               

               
               17-148, gnl|canFam2|chr3 (14289924-14289786)
               

               
               17-148, gnl|dasNov1|scaffold_3343 (62298-62422)
               

               
               17-148, gnl|echTel1|scaffold_317121 (27681-27810)
               

               
               17-148, gnl|hg17|chr5 (98155160-98155280)
               

               
               17-148, gnl|Hg17|chr5 (98155194-98155322)
               

               
               17-148, gnl|loxAfr1|scaffold_191050 (960-845)
               

               
               17-148, gnl|mm7|chr17 (14045558-14045427)
               

               
               17-148, gnl|oryCun1|scaffold_60237 (500-408)
               

               
               17-148, gnl|panTro1|chr4 (103925874-103925992)
               

               
               17-148, gnl|rheMac2|chr6 (95035006-95035123)
               


               
               155-852, gnl|bosTau2|chr7 (60517951-60518684)
               

               
               155-852, gnl|Hg17|chr5 (98155334-98156048)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	17-134, - strand, RNAz p=0.559839
	40-148, - strand, RNAz p=0.993028

	17-148, gnl\|bosTau2\|chr7 (60517775-60517907)
	17-148, gnl\|canFam2\|chr3 (14289924-14289786)
	17-148, gnl\|dasNov1\|scaffold_3343 (62298-62422)
	17-148, gnl\|echTel1\|scaffold_317121 (27681-27810)
	17-148, gnl\|hg17\|chr5 (98155160-98155280)
	17-148, gnl\|Hg17\|chr5 (98155194-98155322)
	17-148, gnl\|loxAfr1\|scaffold_191050 (960-845)
	17-148, gnl\|mm7\|chr17 (14045558-14045427)
	17-148, gnl\|oryCun1\|scaffold_60237 (500-408)
	17-148, gnl\|panTro1\|chr4 (103925874-103925992)
	17-148, gnl\|rheMac2\|chr6 (95035006-95035123)

	155-852, gnl\|bosTau2\|chr7 (60517951-60518684)
	155-852, gnl\|Hg17\|chr5 (98155334-98156048)