Non-Coding RNA Search

Ss1.1-Utr1-UTR010016B04.5

Sequence:


               
               AATAACTTCCTCTCCCGGAGACCTCGTTTTTGCACAAGCCGGCCTTGAAATCAGAGCCTT
TCGAGCAACTCCGAGAGCGTGTGCTCGGCGACCGCGGGCTTGGCCAGCGGCGCGCGCTCG
GCGCCCGGCGCCCCCAGCCCCACGCGCGCCGGGCGGGCGCCATGGAGGAGGGCTCCAGCT
CGCCCGTGTCCCCCGTGGACAGCCTGGGCACCAGCGAGGAGGAACTCGAGCGGCAGCCCA
AGCGCTTCGGCCGGAAGCGGCGCTACAGCAAGAAGTCGAGCGAAGATGGCAGCCCGACCC
CCGGCAAGCGCGGCAAGAAGGGCAGCCCAAGCGCGCAGTCCTTCGAGGAGCTGCAGAGCC
AGCGCATCCTGGCCAACGTGCGCGAGCGCCAGCGCACCCAGTCGCTCAACGAGGCCTTCG
CCGCGCTACGCAAGATCATCCCCACGCTGCCCTCGGACAAGCTCAGCAAGATCCAGACGC
TCAAGCTGGCCGCCAGGTACATAGACTTCCTCTACCAGGTCCTGCAGAGCGACGAGATGG
ACAATAAGATGACCAGCTGCAGCTACGTGGCCCACGAGCGTCTCAGCTACGCCTTCTCCG
TGTGGCGCATGGAGGGCGCGTGGTCCATGTCCGCCTCCCACTAGCGCCTCGCCACCCACG
TCCGGACCGGCGCGTCAGGGCTGTCCCGCGGGGCTGAGCGCAAGTGGAACTGGGGCACAT
CGGCATCCGCGTCTGTAACTTCTGAAACCCAGAGGGCCTCCAGGACACCGCCCGTCCCGT
GCTCCAGGAAGCGTTAGACAAGGGGACAGCGGCAGAGCCCGGACCTCGGCCCCCCACCCC
TCAGAGACGCCCCCAGAGGCAGCGGCGCGCACTCGCGGTCCTTCTTGCCGGTGACATGTC
TTTTGCCATCGTCTCCACTGCTGGGGTGTGTCCACAGCCCCAGGCCTGGGTCTTATTTTT
TTTATTCTTTCCGGGGGAGGGGATTTATTCTTTCTGAAAATCGGTACATTCAGGAACACA
TTTACGAGGGTTTGGATTTGGGATTTGTATTTTCCTCTAAGTGCCTTCTTAATGTATAGT
TTTCAAAATAAAACAGAAATGCATTCCTGTTCCGTTCTGTTTAAACTGGACCAAGGCTCT
TGGACAAAGAACCTCGTATTCCCTTCCCGCCCTCCAGCCTCTGCATGGTCGTTTCTAGTA
AGCCTGGAGCCCTTCGCACAGCTCTGCTCTTTTTCTTTCTCCGTGATTTGCTCAGCTAAC
CCCCCCTTTTTTTTAAAAAAAAATTTTCCCATTTCAGTGTATATGTTGCTTATTTGTCTT
ATTTATTGAGATGTTTTTAACAAGCTCAGTGACTGCAGTGCGGCTGTGTGTCCTGCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAACTTCCTCTCCCGGAGACCTCGTTTTTGCACAAGCCGGCCTTGAAATCAGAGCCTT
TCGAGCAACTCCGAGAGCGTGTGCTCGGCGACCGCGGGCTTGGCCAGCGGCGCGCGCTCG
GCGCCCGGCGCCCCCAGCCCCACGCGCGCCGGGCGGGCGCCATGGAGGAGGGCTCCAGCT
CGCCCGTGTCCCCCGTGGACAGCCTGGGCACCAGCGAGGAGGAACTCGAGCGGCAGCCCA
AGCGCTTCGGCCGGAAGCGGCGCTACAGCAAGAAGTCGAGCGAAGATGGCAGCCCGACCC
CCGGCAAGCGCGGCAAGAAGGGCAGCCCAAGCGCGCAGTCCTTCGAGGAGCTGCAGAGCC
AGCGCATCCTGGCCAACGTGCGCGAGCGCCAGCGCACCCAGTCGCTCAACGAGGCCTTCG
CCGCGCTACGCAAGATCATCCCCACGCTGCCCTCGGACAAGCTCAGCAAGATCCAGACGC
TCAAGCTGGCCGCCAGGTACATAGACTTCCTCTACCAGGTCCTGCAGAGCGACGAGATGG
ACAATAAGATGACCAGCTGCAGCTACGTGGCCCACGAGCGTCTCAGCTACGCCTTCTCCG
TGTGGCGCATGGAGGGCGCGTGGTCCATGTCCGCCTCCCACTAGCGCCTCGCCACCCACG
TCCGGACCGGCGCGTCAGGGCTGTCCCGCGGGGCTGAGCGCAAGTGGAACTGGGGCACAT
CGGCATCCGCGTCTGTAACTTCTGAAACCCAGAGGGCCTCCAGGACACCGCCCGTCCCGT
GCTCCAGGAAGCGTTAGACAAGGGGACAGCGGCAGAGCCCGGACCTCGGCCCCCCACCCC
TCAGAGACGCCCCCAGAGGCAGCGGCGCGCACTCGCGGTCCTTCTTGCCGGTGACATGTC
TTTTGCCATCGTCTCCACTGCTGGGGTGTGTCCACAGCCCCAGGCCTGGGTCTTATTTTT
TTTATTCTTTCCGGGGGAGGGGATTTATTCTTTCTGAAAATCGGTACATTCAGGAACACA
TTTACGAGGGTTTGGATTTGGGATTTGTATTTTCCTCTAAGTGCCTTCTTAATGTATAGT
TTTCAAAATAAAACAGAAATGCATTCCTGTTCCGTTCTGTTTAAACTGGACCAAGGCTCT
TGGACAAAGAACCTCGTATTCCCTTCCCGCCCTCCAGCCTCTGCATGGTCGTTTCTAGTA
AGCCTGGAGCCCTTCGCACAGCTCTGCTCTTTTTCTTTCTCCGTGATTTGCTCAGCTAAC
CCCCCCTTTTTTTTAAAAAAAAATTTTCCCATTTCAGTGTATATGTTGCTTATTTGTCTT
ATTTATTGAGATGTTTTTAACAAGCTCAGTGACTGCAGTGCGGCTGTGTGTCCTGCTCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|21620051|gb|AAH33168.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21620051|gb|AAH33168.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-680, gnl|bosTau2|chr3 (84988629-84989308)
               

               
               1-680, gnl|Hg17|chr7 (18930252-18929532)
               

               
               1-680, gnl|Mm7|chr1 (91709280-91709958)
               


               
               347-533, gnl|bosTau2|chr13 (18231542-18231353)
               

               
               347-533, gnl|Hg17|chr10 (23521942-23522131)
               

               
               347-533, gnl|Mm7|chr2 (19511487-19511676)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-680, gnl|bosTau2|chr3 (84988629-84989308)
               

               
               1-680, gnl|Hg17|chr7 (18930252-18929532)
               

               
               1-680, gnl|Mm7|chr1 (91709280-91709958)
               


               
               347-533, gnl|bosTau2|chr13 (18231542-18231353)
               

               
               347-533, gnl|Hg17|chr10 (23521942-23522131)
               

               
               347-533, gnl|Mm7|chr2 (19511487-19511676)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               eru (0.240096)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	1-680, gnl\|bosTau2\|chr3 (84988629-84989308)
	1-680, gnl\|Hg17\|chr7 (18930252-18929532)
	1-680, gnl\|Mm7\|chr1 (91709280-91709958)

	347-533, gnl\|bosTau2\|chr13 (18231542-18231353)
	347-533, gnl\|Hg17\|chr10 (23521942-23522131)
	347-533, gnl\|Mm7\|chr2 (19511487-19511676)

	eru (0.240096)
	nms (0.213858)
	nep (0.183925)
	ese (0.126502)
	eep (0.122564)