Ss1.1-Utr1-UTR010016D08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGGCTCCGAGGACTTAGGGCTAAGGGCAAGTTCTTCCTTGCTGGGGTAGATTCCCGGG CTAAGAAACTGGTTCCGAATCCAAAGGAACACAGCGCGGAGCGACGCCGGGTCACGTGGC CGGCACCCCCATGACTTGTGGACTTCGGGGCGTCATCGTGACGTTCGGTCGACCTGCCCA GTGGCCCCGCTACGCCCGCCACCTGTGCAGTCGCGGTGCAGTCATGGACTTGGGGCCGAT GCGCAAGAGTTACTGCGGGGAGCGAGAGGCATTTGAGGAGACTCAGCTGACATCCCTGGA CCCCGTGAAGCAGTTTGCTGCCTGGTTTGAGGAAGCTGTTCAGTGTCCTGCCATAGGGGA AGCCAATGCCATGTGTCTGGCTACCTGTACCAGAGATGGGAGGCCGTCCGCCCGCATGGT GCTGCTGAAGGGCTTCGGCAAGGATGGCTTCCGCTTCTTCACTAACTTCCAGAGTCGAAA GGGAAAAGAGCTGGACTCTAATCCCTTCGCCTCCCTTGTCTTCTACTGGGAGCCCCTCAA CCGTCAGGTGCGTTTGGAGGGCCCTGTGAAGAAGCTGCCAGAGGAGGAGGCTGAGAGCTA TTTCCACTCCCGCCCCAGGAGCAGCCAGATTGGGGCTGTGGTCAGTCACCAGAGTTCTGT GATCCCTGATCGGGAGTATCTGAGAAAGAAAAATGAAGAACTGGAGCAGCTCTACCAGGA GCAAGAGGTGCCGAGGCCAAAATACTGGGGTGGCTACATCCTGTACCCACAGGTGATAGA GTTCTGGCAAGGCCAGACCAACCGCCTGCACGACCGGATCGTCTTTCGACGGGGCCCACC GACAGGAGACTCCCCTTTGGGGCCCATGACCCACCGAGGGGAGGAAGACTGGCTCTATGA GAGACTTGCCCCCTGACTCCCAGGCTGCGGGTGCTGACTGGAGCTGGGGCCTGTGCTAAG AGAGGGTGCGGGATCCGGAGCCAGGCCCCTCTAAACTCAACCTCTTTCCTCTCCCACCTC TTACCTTCGGAGCTCTTCAGAATTCATCCTCCGAGTTCTCTGTAGTCAGCTGGTCTAGTG CAGTAGAACAGTGGCATAGATGATCACAAATGGAAAATAATCCCTTAATTATTTTCTTAC CTTGGCTATGATTTACTAGAATAGCTCCCTCTAGGGGTAGCATCGGGTGTGATTCCCTTT TCTGATGACAGGGGGTGGGCACCAGCAACCTTGTGAATCTTGTGACTCTCATGTGATAGT CATGCTGGCCAAAGCTGATTGGTCCCAGCAGAATCACCTGAGCTGGTATAGCCAATCAAT TTTTCTTGTCTCCCATTTGAAATGTGAAATGGAGAGGACCAGAGCTTGGAGTCATTGTAG TGAAGTCAATAATGGCAGCCTGGAAGCACCTGAGGCTGCTGCCCTTACAATTCACTGCGT TGTCCCCTGGATCCCTCCTTTTATGTCCGGGCTGTGCAATTCCTCTTCCTACCTCAAAAA ACCTATTATCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGGCTCCGAGGACTTAGGGCTAAGGGCAAGTTCTTCCTTGCTGGGGTAGATTCCCGGG CTAAGAAACTGGTTCCGAATCCAAAGGAACACAGCGCGGAGCGACGCCGGGTCACGTGGC CGGCACCCCCATGACTTGTGGACTTCGGGGCGTCATCGTGACGTTCGGTCGACCTGCCCA GTGGCCCCGCTACGCCCGCCACCTGTGCAGTCGCGGTGCAGTCATGGACTTGGGGCCGAT GCGCAAGAGTTACTGCGGGGAGCGAGAGGCATTTGAGGAGACTCAGCTGACATCCCTGGA CCCCGTGAAGCAGTTTGCTGCCTGGTTTGAGGAAGCTGTTCAGTGTCCTGCCATAGGGGA AGCCAATGCCATGTGTCTGGCTACCTGTACCAGAGATGGGAGGCCGTCCGCCCGCATGGT GCTGCTGAAGGGCTTCGGCAAGGATGGCTTCCGCTTCTTCACTAACTTCCAGAGTCGAAA GGGAAAAGAGCTGGACTCTAATCCCTTCGCCTCCCTTGTCTTCTACTGGGAGCCCCTCAA CCGTCAGGTGCGTTTGGAGGGCCCTGTGAAGAAGCTGCCAGAGGAGGAGGCTGAGAGCTA TTTCCACTCCCGCCCCAGGAGCAGCCAGATTGGGGCTGTGGTCAGTCACCAGAGTTCTGT GATCCCTGATCGGGAGTATCTGAGAAAGAAAAATGAAGAACTGGAGCAGCTCTACCAGGA GCAAGAGGTGCCGAGGCCAAAATACTGGGGTGGCTACATCCTGTACCCACAGGTGATAGA GTTCTGGCAAGGCCAGACCAACCGCCTGCACGACCGGATCGTCTTTCGACGGGGCCCACC GACAGGAGACTCCCCTTTGGGGCCCATGACCCACCGAGGGGAGGAAGACTGGCTCTATGA GAGACTTGCCCCCTGACTCCCAGGCTGCGGGTGCTGACTGGAGCTGGGGCCTGTGCTAAG AGAGGGTGCGGGATCCGGAGCCAGGCCCCTCTAAACTCAACCTCTTTCCTCTCCCACCTC TTACCTTCGGAGCTCTTCAGAATTCATCCTCCGAGTTCTCTGTAGTCAGCTGGTCTAGTG CAGTAGAACAGTGGCATAGATGATCACAAATGGAAAATAATCCCTTAATTATTTTCTTAC CTTGGCTATGATTTACTAGAATAGCTCCCTCTAGGGGTAGCATCGGGTGTGATTCCCTTT TCTGATGACAGGGGGTGGGCACCAGCAACCTTGTGAATCTTGTGACTCTCATGTGATAGT CATGCTGGCCAAAGCTGATTGGTCCCAGCAGAATCACCTGAGCTGGTATAGCCAATCAAT TTTTCTTGTCTCCCATTTGAAATGTGAAATGGAGAGGACCAGAGCTTGGAGTCATTGTAG TGAAGTCAATAATGGCAGCCTGGAAGCACCTGAGGCTGCTGCCCTTACAATTCACTGCGT TGTCCCCTGGATCCCTCCTTTTATGTCCGGGCTGTGCAATTCCTCTTCCTACCTCAAAAA ACCTATTATCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1164-1283, + strand, RNAz p=0.660533 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1164-1283, + strand, RNAz p=0.660533 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_018129, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 30-269, gnl|bosTau2|chr12 (29000169-29000406) | |
| 30-269, gnl|canFam2|chr9 (27579975-27580394) | |
| 30-269, gnl|dasNov1|scaffold_46078 (12624-12221) | |
| 30-269, gnl|echTel1|scaffold_315417 (52791-52412) | |
| 30-269, gnl|hg17|chr17 (43373695-43374117) | |
| 30-269, gnl|Hg17|chr17 (43373936-43374179) | |
| 30-269, gnl|loxAfr1|scaffold_15497 (14617-14181) | |
| 30-269, gnl|mm7|chr11 (97053261-97052833) | |
| 30-269, gnl|Mm7|chr11 (97052999-97052769) | |
| 30-269, gnl|monDom2|scaffold_18 (46533362-46532856) | |
| 30-269, gnl|oryCun1|scaffold_62891 (1298-901) | |
| 30-269, gnl|panTro1|chr19_random (42246093-42246515) | |
| 30-269, gnl|rheMac2|chr16 (32154635-32155056) | |
| 369-494, gnl|bosTau2|chr12 (29003949-29004075) | |
| 369-494, gnl|Hg17|chr17 (43376954-43377081) | |
| 369-494, gnl|Mm7|chr11 (97050021-97049894) | |
| 545-676, gnl|bosTau2|chr12 (29005227-29005358) | |
| 545-676, gnl|canFam2|chr9 (27584111-27584271) | |
| 545-676, gnl|danRer3|chr12 (23525524-23525381) | |
| 545-676, gnl|dasNov1|scaffold_46078 (7704-7546) | |
| 545-676, gnl|echTel1|scaffold_315417 (49145-48992) | |
| 545-676, gnl|fr1|chrUn (226860351-226860509) | |
| 545-676, gnl|hg17|chr17 (43378218-43378378) | |
| 545-676, gnl|Hg17|chr17 (43378223-43378354) | |
| 545-676, gnl|loxAfr1|scaffold_15497 (10543-10383) | |
| 545-676, gnl|mm7|chr11 (97048825-97048665) | |
| 545-676, gnl|Mm7|chr11 (97048818-97048687) | |
| 545-676, gnl|monDom2|scaffold_18 (46531041-46530899) | |
| 545-676, gnl|oryCun1|scaffold_174495 (3212-3360) | |
| 545-676, gnl|panTro1|chr19_random (42250617-42250777) | |
| 545-676, gnl|rheMac2|chr16 (32159180-32159340) | |
| 545-676, gnl|tetNig1|chr2 (1365118-1365253) | |
| 545-676, gnl|xenTro1|scaffold_329 (142972-143114) | |
| 747-1511, gnl|bosTau2|chr12 (29005947-29006692) | |
| 747-1511, gnl|Hg17|chr17 (43378978-43379770) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-269, gnl|bosTau2|chr12 (29000169-29000406) | |
| 30-269, gnl|canFam2|chr9 (27579975-27580394) | |
| 30-269, gnl|dasNov1|scaffold_46078 (12624-12221) | |
| 30-269, gnl|echTel1|scaffold_315417 (52791-52412) | |
| 30-269, gnl|hg17|chr17 (43373695-43374117) | |
| 30-269, gnl|Hg17|chr17 (43373936-43374179) | |
| 30-269, gnl|loxAfr1|scaffold_15497 (14617-14181) | |
| 30-269, gnl|mm7|chr11 (97053261-97052833) | |
| 30-269, gnl|Mm7|chr11 (97052999-97052769) | |
| 30-269, gnl|monDom2|scaffold_18 (46533362-46532856) | |
| 30-269, gnl|oryCun1|scaffold_62891 (1298-901) | |
| 30-269, gnl|panTro1|chr19_random (42246093-42246515) | |
| 30-269, gnl|rheMac2|chr16 (32154635-32155056) | |
| 369-494, gnl|bosTau2|chr12 (29003949-29004075) | |
| 369-494, gnl|Hg17|chr17 (43376954-43377081) | |
| 369-494, gnl|Mm7|chr11 (97050021-97049894) | |
| 545-676, gnl|bosTau2|chr12 (29005227-29005358) | |
| 545-676, gnl|canFam2|chr9 (27584111-27584271) | |
| 545-676, gnl|danRer3|chr12 (23525524-23525381) | |
| 545-676, gnl|dasNov1|scaffold_46078 (7704-7546) | |
| 545-676, gnl|echTel1|scaffold_315417 (49145-48992) | |
| 545-676, gnl|fr1|chrUn (226860351-226860509) | |
| 545-676, gnl|hg17|chr17 (43378218-43378378) | |
| 545-676, gnl|Hg17|chr17 (43378223-43378354) | |
| 545-676, gnl|loxAfr1|scaffold_15497 (10543-10383) | |
| 545-676, gnl|mm7|chr11 (97048825-97048665) | |
| 545-676, gnl|Mm7|chr11 (97048818-97048687) | |
| 545-676, gnl|monDom2|scaffold_18 (46531041-46530899) | |
| 545-676, gnl|oryCun1|scaffold_174495 (3212-3360) | |
| 545-676, gnl|panTro1|chr19_random (42250617-42250777) | |
| 545-676, gnl|rheMac2|chr16 (32159180-32159340) | |
| 545-676, gnl|tetNig1|chr2 (1365118-1365253) | |
| 545-676, gnl|xenTro1|scaffold_329 (142972-143114) | |
| 747-1511, gnl|bosTau2|chr12 (29005947-29006692) | |
| 747-1511, gnl|Hg17|chr17 (43378978-43379770) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| nje (0.66368) | |
| nms (0.427716) | |
| fli (0.202881) | |
| jej (0.197844) | |
| sin (0.174948) | |
| rec (0.17307) | |
| csp (0.161186) | |
| cov (0.132153) | |
| thg (0.126791) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.66368) | |
| nms (0.427716) | |
| fli (0.202881) | |
| jej (0.197844) | |
| sin (0.174948) | |
| rec (0.17307) | |
| csp (0.161186) | |
| cov (0.132153) | |
| thg (0.126791) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |