Ss1.1-Utr1-UTR010016D09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATGGGCCCGCGGGCCGGGCGGACTCGGGCGGCCTGGACCGGGAGGAACAGCGAGGGGC GGCGAGCGAGGCTGGGTCCCGGCACGCCCCCGGAGCCCCCCGAGTGGATTTCCACGCGGA AAGGATGGTGGCCGTCCGGGTGACCTGCGGAGACACGGCCGGATCCACCTTCCACTTCCT GTGATGGCTGTGGTGTAATCTGAAAAAATGCAGATCCGTTCAGAACTCCAGAAGGACTTG AAAACTGTCCTGCCCTGAACGAAAGCTGGAATATCGTGGGCTTTGATGAACCAAGGAAAA GTGCCTTCATCAGGACGCAGCAGTAAGCCTGCTGACTACTTAAGCCCTGCCTAGGTTCCT AGGAAATGGGCAGGAAAAGTGCCTGCCACCTGCTGCTTGCTGGTGTGCTGTTTTGGCAGC AGGAGCTGTGGGAACACACAGGGGCAGGAGAACAAACACATTACACACGAGGACTTCCAT CCTCCAGCCAGCAAGGTGCCGACACCTCACACTTGACACCTGCTGAGCGCCCTACTGTGT GCCCCGCCCCCCTGAACGAGGCAGCCTCGGAGCTTGGATCCTAGTTGGAGAGACAGGCAA TTAGCAGGATGGCAGATCCACATCCAGGATCCTGGGAAGCACTTGACAGAGGGGAGGAGC CCAGCAATAACACTGACCAAAGAGAAGTGAATCCTTTTGCCCAGTGACTGGAAGACACAA GAAAGTGGTGGGGGGTGGGAGGCAGGGGGGAAGGAGCCTGGCACCTTGCCACGCTTCCCC TGTAAGGAGCACACACCCTCTCCCCCACCCCCTCCCCCCAAACACATAATACCTTTTAAC TGGTGATTTGGTCACTGCTGTGCTATCTTCATTGAATGTGGTTTTGAGAGAATGGTTGGT CTGGAAATTTTATTTTCAATTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATGGGCCCGCGGGCCGGGCGGACTCGGGCGGCCTGGACCGGGAGGAACAGCGAGGGGC GGCGAGCGAGGCTGGGTCCCGGCACGCCCCCGGAGCCCCCCGAGTGGATTTCCACGCGGA AAGGATGGTGGCCGTCCGGGTGACCTGCGGAGACACGGCCGGATCCACCTTCCACTTCCT GTGATGGCTGTGGTGTAATCTGAAAAAATGCAGATCCGTTCAGAACTCCAGAAGGACTTG AAAACTGTCCTGCCCTGAACGAAAGCTGGAATATCGTGGGCTTTGATGAACCAAGGAAAA GTGCCTTCATCAGGACGCAGCAGTAAGCCTGCTGACTACTTAAGCCCTGCCTAGGTTCCT AGGAAATGGGCAGGAAAAGTGCCTGCCACCTGCTGCTTGCTGGTGTGCTGTTTTGGCAGC AGGAGCTGTGGGAACACACAGGGGCAGGAGAACAAACACATTACACACGAGGACTTCCAT CCTCCAGCCAGCAAGGTGCCGACACCTCACACTTGACACCTGCTGAGCGCCCTACTGTGT GCCCCGCCCCCCTGAACGAGGCAGCCTCGGAGCTTGGATCCTAGTTGGAGAGACAGGCAA TTAGCAGGATGGCAGATCCACATCCAGGATCCTGGGAAGCACTTGACAGAGGGGAGGAGC CCAGCAATAACACTGACCAAAGAGAAGTGAATCCTTTTGCCCAGTGACTGGAAGACACAA GAAAGTGGTGGGGGGTGGGAGGCAGGGGGGAAGGAGCCTGGCACCTTGCCACGCTTCCCC TGTAAGGAGCACACACCCTCTCCCCCACCCCCTCCCCCCAAACACATAATACCTTTTAAC TGGTGATTTGGTCACTGCTGTGCTATCTTCATTGAATGTGGTTTTGAGAGAATGGTTGGT CTGGAAATTTTATTTTCAATTAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 295-436, + strand, RNAz p=0.999575 | |
| 301-436, - strand, RNAz p=0.971982 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 295-436, + strand, RNAz p=0.999575 | |
| 301-436, - strand, RNAz p=0.971982 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-174, gnl|bosTau2|chr14 (6618536-6618714) | |
| 1-174, gnl|canFam2|chr13 (28288429-28288559) | |
| 1-174, gnl|dasNov1|scaffold_47200 (4885-5039) | |
| 1-174, gnl|echTel1|scaffold_122258 (1234-1090) | |
| 1-174, gnl|hg17|chr8 (128875979-128876130) | |
| 1-174, gnl|Hg17|chr8 (128875991-128876162) | |
| 1-174, gnl|loxAfr1|scaffold_41417 (5844-5695) | |
| 1-174, gnl|mm7|chr15 (62112334-62112465) | |
| 1-174, gnl|Mm7|chr15 (62112346-62112496) | |
| 1-174, gnl|monDom2|scaffold_3 (25091555-25091419) | |
| 1-174, gnl|oryCun1|scaffold_199076 (163289-163442) | |
| 1-174, gnl|panTro1|chr7 (131573292-131573443) | |
| 1-174, gnl|rn3|chr7 (99050259-99050392) | |
| 295-436, gnl|bosTau2|chr14 (6801912-6802049) | |
| 295-436, gnl|canFam2|chr13 (28480742-28481062) | |
| 295-436, gnl|dasNov1|scaffold_2532 (11306-11033) | |
| 295-436, gnl|hg17|chr8 (129116539-129116880) | |
| 295-436, gnl|Hg17|chr8 (129116566-129116721) | |
| 295-436, gnl|monDom2|scaffold_3 (24778205-24777861) | |
| 295-436, gnl|oryCun1|scaffold_202375 (56802-56535) | |
| 295-436, gnl|panTro1|chr7 (131813660-131814001) | |
| 295-436, gnl|rheMac2|chr8 (130646244-130646585) | |
| 518-623, gnl|bosTau2|chr14 (6830614-6830720) | |
| 518-623, gnl|canFam2|chr13 (28514654-28515013) | |
| 518-623, gnl|dasNov1|scaffold_47965 (494-854) | |
| 518-623, gnl|hg17|chr8 (129147051-129147464) | |
| 518-623, gnl|Hg17|chr8 (129147317-129147419) | |
| 518-623, gnl|oryCun1|scaffold_174947 (70348-70019) | |
| 518-623, gnl|panTro1|chr7 (131844405-131844806) | |
| 518-623, gnl|rheMac2|chr8 (130695680-130696076) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-174, gnl|bosTau2|chr14 (6618536-6618714) | |
| 1-174, gnl|canFam2|chr13 (28288429-28288559) | |
| 1-174, gnl|dasNov1|scaffold_47200 (4885-5039) | |
| 1-174, gnl|echTel1|scaffold_122258 (1234-1090) | |
| 1-174, gnl|hg17|chr8 (128875979-128876130) | |
| 1-174, gnl|Hg17|chr8 (128875991-128876162) | |
| 1-174, gnl|loxAfr1|scaffold_41417 (5844-5695) | |
| 1-174, gnl|mm7|chr15 (62112334-62112465) | |
| 1-174, gnl|Mm7|chr15 (62112346-62112496) | |
| 1-174, gnl|monDom2|scaffold_3 (25091555-25091419) | |
| 1-174, gnl|oryCun1|scaffold_199076 (163289-163442) | |
| 1-174, gnl|panTro1|chr7 (131573292-131573443) | |
| 1-174, gnl|rn3|chr7 (99050259-99050392) | |
| 295-436, gnl|bosTau2|chr14 (6801912-6802049) | |
| 295-436, gnl|canFam2|chr13 (28480742-28481062) | |
| 295-436, gnl|dasNov1|scaffold_2532 (11306-11033) | |
| 295-436, gnl|hg17|chr8 (129116539-129116880) | |
| 295-436, gnl|Hg17|chr8 (129116566-129116721) | |
| 295-436, gnl|monDom2|scaffold_3 (24778205-24777861) | |
| 295-436, gnl|oryCun1|scaffold_202375 (56802-56535) | |
| 295-436, gnl|panTro1|chr7 (131813660-131814001) | |
| 295-436, gnl|rheMac2|chr8 (130646244-130646585) | |
| 518-623, gnl|bosTau2|chr14 (6830614-6830720) | |
| 518-623, gnl|canFam2|chr13 (28514654-28515013) | |
| 518-623, gnl|dasNov1|scaffold_47965 (494-854) | |
| 518-623, gnl|hg17|chr8 (129147051-129147464) | |
| 518-623, gnl|Hg17|chr8 (129147317-129147419) | |
| 518-623, gnl|oryCun1|scaffold_174947 (70348-70019) | |
| 518-623, gnl|panTro1|chr7 (131844405-131844806) | |
| 518-623, gnl|rheMac2|chr8 (130695680-130696076) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) |