Non-Coding RNA Search

Ss1.1-Utr1-UTR010016E05.5

Sequence:


               
               TTCCAGAGTTCGGGGACCAGGAACCCACGCGGTTGCTGCGCAGGTGCCCGCGGTTGCTGC
GCAGGTGCCCTCCGACTCGGTCGGGATGGAGCTGCCCGCCGTGAACCTGAAGGCGATCCT
CCTGGTTCACTGGCTGCTGACCATCTGGGGCTGCATTGTGTTCCCGGGCCCCTATGCCTG
GGCCAACTTCACCATCCTGGCCTTGGGCGTGTGGGCCGTGGCGCAGCGGGACTCCGTCGA
CGCCATAAGTATGTTTCTGGGTGGCCTGGTGGTCACCATCTTCCTGGACATCGTCCACAT
CAGCATCTTCTACCCGAGGGCCGGCCTCTCGGACACGGGGCGCTTCAGCGCGGGCATGGC
CATCCTCAGCCTGCTCCTCAAGCCGTTCTCCTGCTGCCTCGTCTACCACATGTACCGGGA
GCGCGGGGGTTTCCTCGTGCCTTCGCAGGAGCGCAGCGCCTACCAGACCATCGACTCAGA
GGTGCCTGCCGACCTGGAGAGCAGGCCTCAAGGCCCCCAAGGATACTGAAGCCGGCCAAG
TCCAGGAGCCAGCTTGACAGACCTCCAGGGAGGCGCAGGCGGCATCACCCTCTTTGTACC
TCGGGTGTCATTTGTGTCTTGGATGGCCTCCCTTTCTTAGAACTAACGTGGGAACGAACC
CAGTTTCCCAGCTCAGGGGTTGCCTGAATCAAGTGCCCTGAGAGGCCAGGAGCCCCCGCC
CTGGCACACCTGTCCCAGACTCCCCGAGGCCTCTCCTCACTCCAGGAATCATGCTGGGCC
CAGTCTGGGAACTGTGGTTGCTTTTGTCACCTCCACCCTAAGTGGCTCCGTGAAGGCCCC
AGGCCAAGCTGTGCCTAAGCCCTCAGGCCTCCAAGGGCTTCAGCTCAGGTTCAGGCCCCA
GGGAAAGCTTCTCACTGCCTGGTCACTTGGTGCCTGGGGACCCCGGGGCTGGAGGCAGGA
GGTGTCTGCAGCCTTTGAGACCCACCACGGCCTCCAGCTGCCTTTCTCAGAGCCATAGCA
TTAAAGTTCGGGGAATTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCAGAGTTCGGGGACCAGGAACCCACGCGGTTGCTGCGCAGGTGCCCGCGGTTGCTGC
GCAGGTGCCCTCCGACTCGGTCGGGATGGAGCTGCCCGCCGTGAACCTGAAGGCGATCCT
CCTGGTTCACTGGCTGCTGACCATCTGGGGCTGCATTGTGTTCCCGGGCCCCTATGCCTG
GGCCAACTTCACCATCCTGGCCTTGGGCGTGTGGGCCGTGGCGCAGCGGGACTCCGTCGA
CGCCATAAGTATGTTTCTGGGTGGCCTGGTGGTCACCATCTTCCTGGACATCGTCCACAT
CAGCATCTTCTACCCGAGGGCCGGCCTCTCGGACACGGGGCGCTTCAGCGCGGGCATGGC
CATCCTCAGCCTGCTCCTCAAGCCGTTCTCCTGCTGCCTCGTCTACCACATGTACCGGGA
GCGCGGGGGTTTCCTCGTGCCTTCGCAGGAGCGCAGCGCCTACCAGACCATCGACTCAGA
GGTGCCTGCCGACCTGGAGAGCAGGCCTCAAGGCCCCCAAGGATACTGAAGCCGGCCAAG
TCCAGGAGCCAGCTTGACAGACCTCCAGGGAGGCGCAGGCGGCATCACCCTCTTTGTACC
TCGGGTGTCATTTGTGTCTTGGATGGCCTCCCTTTCTTAGAACTAACGTGGGAACGAACC
CAGTTTCCCAGCTCAGGGGTTGCCTGAATCAAGTGCCCTGAGAGGCCAGGAGCCCCCGCC
CTGGCACACCTGTCCCAGACTCCCCGAGGCCTCTCCTCACTCCAGGAATCATGCTGGGCC
CAGTCTGGGAACTGTGGTTGCTTTTGTCACCTCCACCCTAAGTGGCTCCGTGAAGGCCCC
AGGCCAAGCTGTGCCTAAGCCCTCAGGCCTCCAAGGGCTTCAGCTCAGGTTCAGGCCCCA
GGGAAAGCTTCTCACTGCCTGGTCACTTGGTGCCTGGGGACCCCGGGGCTGGAGGCAGGA
GGTGTCTGCAGCCTTTGAGACCCACCACGGCCTCCAGCTGCCTTTCTCAGAGCCATAGCA
TTAAAGTTCGGGGAATTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55725931|emb|CAH89745.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55725931|emb|CAH89745.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               147-253, gnl|bosTau2|chr16 (21572119-21572013)
               

               
               147-253, gnl|Hg17|chr1 (11741762-11741868)
               

               
               147-253, gnl|Mm7|chr4 (147071919-147071813)
               


               
               428-861, gnl|bosTau2|chr16 (21569617-21569178)
               

               
               428-861, gnl|Hg17|chr1 (11744399-11744823)
               

               
               428-861, gnl|Mm7|chr4 (147070147-147069734)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-253, gnl|bosTau2|chr16 (21572119-21572013)
               

               
               147-253, gnl|Hg17|chr1 (11741762-11741868)
               

               
               147-253, gnl|Mm7|chr4 (147071919-147071813)
               


               
               428-861, gnl|bosTau2|chr16 (21569617-21569178)
               

               
               428-861, gnl|Hg17|chr1 (11744399-11744823)
               

               
               428-861, gnl|Mm7|chr4 (147070147-147069734)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               nep (0.36785)
               

               
               fty (0.351679)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)
               

               
               fty (0.351679)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	147-253, gnl\|bosTau2\|chr16 (21572119-21572013)
	147-253, gnl\|Hg17\|chr1 (11741762-11741868)
	147-253, gnl\|Mm7\|chr4 (147071919-147071813)

	428-861, gnl\|bosTau2\|chr16 (21569617-21569178)
	428-861, gnl\|Hg17\|chr1 (11744399-11744823)
	428-861, gnl\|Mm7\|chr4 (147070147-147069734)

	nep (0.36785)
	fty (0.351679)
	fbs (0.175346)
	nje (0.16592)
	cli (0.152812)
	hyp (0.142837)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	med (0.116252)
	eje (0.0988338)