Ss1.1-Utr1-UTR010016H02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCAAGGCATAGTGGGCGACATGTCGGCGACCGTGGCGGCTCGAAAGCGGGGAAAGTCA GCCTCAGGAGCCGGGGCTGGTGCGGGGGCCGGCAAGCGGCGGCGAAAGGGCGACTCTTCT GGGGACAAGGGCAAGTCCAAGGGTGGCGGCAAGATGAATGAGGAAATATCCAGTGACTCG GAAAATGAAAGCATAGCTCCCAGGAAGACTGAGGAGGAGGAGGAGGAAGAGTTGGAAGAG ACTGCACAGGAGAAGAAGTTGCGCTTGGCCAAGCTTTATCTTGAGCAGCTCAAGCAGCAA GAGGAGGAGAAGGCTGAGGCCCGTGAATTTGAGGAGGACCAGGTGGCGGGAAAACTGAAG GAGGACGTGCTCGAGCAGAGGGGCAGGCTGCAGAAGTCGGTGGCAAAGGAGATCCAGGCC CCAGCCCCAGCCGACATCCGAATCTTACGGGGCCACCAGCTTTCCATCACATGTTTGGTT ATCACCCCTGACGACCTGGCCATCTTTTCTGCCGCCAAAGACTGCACCATTATTAAGTGG AGCGTGGAGAGTGGACGGAAGCTTCATGTCATCCCTCGAGCCAAGAAGGGTGCTGAGGGG CAGCCCCCTGGCCACAGCAGCCACATCCTTTGCATGGCCATCTCTTCTGATGGCAAGTAC CTGGCCTCAGGTGACCGCAGCAAGCTCATTCTCATCTGGGAGGCGCAGAGCTGCCGGCAC CTGTACACCTTCACAGGACACCGGGACGCCGTGTCGGGGCTGGCGTTCCGTAGAGGCACC CACCAGCTCTACAGCACGTCCCATGACCGCTCCGTGAAGGTGTGGAATGTGGCAGAGAAC TCCTACGTGGAGACACTCTTCGGGCACCAGGATGCTGTGGCTGCACTGGATGCCCTGAGC AGGGAGTGCTGCGTGACAGCGGGGGGCCGGGATGGGACTGTGCGTGTGTGGAAGATCCCT GAGGAGTCTCAGCTTGTCTTCTACGGCCACCAGGGCTCCATCGACAGCATCCAGCTCATC AACGAGGAGCACATGGTGTCAGGTGCTGATGATGGCTCTGTGGCCTTGTGGGGCCTCTCC AAGAAGCGGCCGCTTGCCCTGCAGCGTGAGGCCCATGGGCTGCGGGGGGAGCAGGGCTTG GAGCAGCCCTTCTGGGTGTCGTCAGTGGCGGCCCTGCTCAACACAGACCTCATAGCCACA GGCTCCCACAACAACTCTGTGCGGCTCTGGCAGTGCGGGGAGGGCTTCCGGCAGCTTGAC CTTCTCTGCGACATCCCCTTGGTGGGCTTTATCAATAGTCTCAAGTTCTCCAGTGCTGGG GACTTCCTGGTGGCCGGGGTGGGGCAGGAGCACAGGCTTGGCCGGTGGTGGCGGATCAAA GAGGCCCGGAATTCTGTCTGCATCATCCCTCTCCACAGGGCCCCCAGGCCCCCGGCTGCT GGCTCCTGACACTCTCATCCTCTTTATTTAACTTCTTCCCAGGCCATCCCCTGCCTTCTT TGTATTAAAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCAAGGCATAGTGGGCGACATGTCGGCGACCGTGGCGGCTCGAAAGCGGGGAAAGTCA GCCTCAGGAGCCGGGGCTGGTGCGGGGGCCGGCAAGCGGCGGCGAAAGGGCGACTCTTCT GGGGACAAGGGCAAGTCCAAGGGTGGCGGCAAGATGAATGAGGAAATATCCAGTGACTCG GAAAATGAAAGCATAGCTCCCAGGAAGACTGAGGAGGAGGAGGAGGAAGAGTTGGAAGAG ACTGCACAGGAGAAGAAGTTGCGCTTGGCCAAGCTTTATCTTGAGCAGCTCAAGCAGCAA GAGGAGGAGAAGGCTGAGGCCCGTGAATTTGAGGAGGACCAGGTGGCGGGAAAACTGAAG GAGGACGTGCTCGAGCAGAGGGGCAGGCTGCAGAAGTCGGTGGCAAAGGAGATCCAGGCC CCAGCCCCAGCCGACATCCGAATCTTACGGGGCCACCAGCTTTCCATCACATGTTTGGTT ATCACCCCTGACGACCTGGCCATCTTTTCTGCCGCCAAAGACTGCACCATTATTAAGTGG AGCGTGGAGAGTGGACGGAAGCTTCATGTCATCCCTCGAGCCAAGAAGGGTGCTGAGGGG CAGCCCCCTGGCCACAGCAGCCACATCCTTTGCATGGCCATCTCTTCTGATGGCAAGTAC CTGGCCTCAGGTGACCGCAGCAAGCTCATTCTCATCTGGGAGGCGCAGAGCTGCCGGCAC CTGTACACCTTCACAGGACACCGGGACGCCGTGTCGGGGCTGGCGTTCCGTAGAGGCACC CACCAGCTCTACAGCACGTCCCATGACCGCTCCGTGAAGGTGTGGAATGTGGCAGAGAAC TCCTACGTGGAGACACTCTTCGGGCACCAGGATGCTGTGGCTGCACTGGATGCCCTGAGC AGGGAGTGCTGCGTGACAGCGGGGGGCCGGGATGGGACTGTGCGTGTGTGGAAGATCCCT GAGGAGTCTCAGCTTGTCTTCTACGGCCACCAGGGCTCCATCGACAGCATCCAGCTCATC AACGAGGAGCACATGGTGTCAGGTGCTGATGATGGCTCTGTGGCCTTGTGGGGCCTCTCC AAGAAGCGGCCGCTTGCCCTGCAGCGTGAGGCCCATGGGCTGCGGGGGGAGCAGGGCTTG GAGCAGCCCTTCTGGGTGTCGTCAGTGGCGGCCCTGCTCAACACAGACCTCATAGCCACA GGCTCCCACAACAACTCTGTGCGGCTCTGGCAGTGCGGGGAGGGCTTCCGGCAGCTTGAC CTTCTCTGCGACATCCCCTTGGTGGGCTTTATCAATAGTCTCAAGTTCTCCAGTGCTGGG GACTTCCTGGTGGCCGGGGTGGGGCAGGAGCACAGGCTTGGCCGGTGGTGGCGGATCAAA GAGGCCCGGAATTCTGTCTGCATCATCCCTCTCCACAGGGCCCCCAGGCCCCCGGCTGCT GGCTCCTGACACTCTCATCCTCTTTATTTAACTTCTTCCCAGGCCATCCCCTGCCTTCTT TGTATTAAAAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 194-312, - strand, RNAz p=0.824161 | |
| 876-993, + strand, RNAz p=0.699796 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 194-312, - strand, RNAz p=0.824161 | |
| 876-993, + strand, RNAz p=0.699796 |
| Aligned organism(s): 74 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
| 8-109, gnl|bosTau2|chr22 (36454066-36453965) | |
| 8-109, gnl|canFam2|chr20 (40770419-40770167) | |
| 8-109, gnl|dasNov1|scaffold_18091 (13039-12808) | |
| 8-109, gnl|echTel1|scaffold_305754 (3354-3603) | |
| 8-109, gnl|hg17|chr3 (51950681-51950932) | |
| 8-109, gnl|Hg17|chr3 (51950937-51950836) | |
| 8-109, gnl|loxAfr1|scaffold_531 (118325-118073) | |
| 8-109, gnl|mm7|chr9 (106207035-106206792) | |
| 8-109, gnl|Mm7|chr9 (106206782-106206883) | |
| 8-109, gnl|monDom2|scaffold_5 (71785435-71785267) | |
| 8-109, gnl|oryCun1|scaffold_146450 (5168-4929) | |
| 8-109, gnl|panTro1|chr2 (53559593-53559844) | |
| 8-109, gnl|rheMac2|chr2 (84456687-84456450) | |
| 8-109, gnl|rn3|chr8 (111641718-111641468) | |
| 194-326, gnl|bosTau2|chr22 (36450533-36450401) | |
| 194-326, gnl|Hg17|chr3 (51947258-51947127) | |
| 194-326, gnl|Mm7|chr9 (106210146-106210279) | |
| 410-539, gnl|bosTau2|chr22 (36449563-36449434) | |
| 410-539, gnl|canFam2|chr20 (40776603-40776431) | |
| 410-539, gnl|danRer3|chr11 (38591199-38591049) | |
| 410-539, gnl|fr1|chrUn (44902395-44902251) | |
| 410-539, gnl|galGal2|chr12 (49774-49624) | |
| 410-539, gnl|hg17|chr3 (51946242-51946415) | |
| 410-539, gnl|Hg17|chr3 (51946376-51946247) | |
| 410-539, gnl|loxAfr1|scaffold_531 (122160-122001) | |
| 410-539, gnl|mm7|chr9 (106211342-106211168) | |
| 410-539, gnl|Mm7|chr9 (106211206-106211335) | |
| 410-539, gnl|monDom2|scaffold_5 (71801123-71800955) | |
| 410-539, gnl|oryCun1|scaffold_172607 (46098-46270) | |
| 410-539, gnl|panTro1|chr2 (53555155-53555328) | |
| 410-539, gnl|rheMac2|chr2 (84461624-84461451) | |
| 410-539, gnl|rn3|chr8 (111647144-111646971) | |
| 410-539, gnl|tetNig1|chr11 (4828630-4828772) | |
| 410-539, gnl|xenTro1|scaffold_189 (1676215-1676364) | |
| 756-857, gnl|bosTau2|chr22 (36448141-36448040) | |
| 756-857, gnl|canFam2|chr20 (40777896-40777785) | |
| 756-857, gnl|danRer3|chr11 (38593524-38593413) | |
| 756-857, gnl|fr1|chrUn (44902985-44902869) | |
| 756-857, gnl|galGal2|chr12 (51172-51061) | |
| 756-857, gnl|hg17|chr3 (51944640-51944751) | |
| 756-857, gnl|Hg17|chr3 (51944749-51944648) | |
| 756-857, gnl|loxAfr1|scaffold_531 (123599-123488) | |
| 756-857, gnl|mm7|chr9 (106213115-106213004) | |
| 756-857, gnl|Mm7|chr9 (106213004-106213105) | |
| 756-857, gnl|monDom2|scaffold_5 (71802111-71802000) | |
| 756-857, gnl|oryCun1|scaffold_172607 (44750-44863) | |
| 756-857, gnl|panTro1|chr2 (53553554-53553665) | |
| 756-857, gnl|rheMac2|chr2 (84463152-84463041) | |
| 756-857, gnl|rn3|chr8 (111648642-111648531) | |
| 756-857, gnl|tetNig1|chr11 (4828017-4828126) | |
| 756-857, gnl|xenTro1|scaffold_189 (1675635-1675716) | |
| 858-993, gnl|bosTau2|chr22 (36447955-36447820) | |
| 858-993, gnl|canFam2|chr20 (40778124-40777950) | |
| 858-993, gnl|danRer3|chr11 (38596340-38596173) | |
| 858-993, gnl|fr1|chrUn (44903202-44903037) | |
| 858-993, gnl|galGal2|chr12 (51443-51254) | |
| 858-993, gnl|hg17|chr3 (51944384-51944558) | |
| 858-993, gnl|Hg17|chr3 (51944532-51944397) | |
| 858-993, gnl|loxAfr1|scaffold_531 (123823-123653) | |
| 858-993, gnl|mm7|chr9 (106213345-106213175) | |
| 858-993, gnl|Mm7|chr9 (106213195-106213330) | |
| 858-993, gnl|monDom2|scaffold_5 (71802997-71802780) | |
| 858-993, gnl|oryCun1|scaffold_172607 (44527-44697) | |
| 858-993, gnl|panTro1|chr2 (53553310-53553484) | |
| 858-993, gnl|rheMac2|chr2 (84463399-84463230) | |
| 858-993, gnl|rn3|chr8 (111648873-111648706) | |
| 858-993, gnl|tetNig1|chr11 (4827792-4827946) | |
| 858-993, gnl|xenTro1|scaffold_189 (1674554-1674715) | |
| 1057-1202, gnl|bosTau2|chr22 (36447456-36447311) | |
| 1057-1202, gnl|Hg17|chr3 (51943831-51943686) | |
| 1057-1202, gnl|Mm7|chr9 (106213660-106213809) | |
| 1353-1511, gnl|bosTau2|chr22 (36446372-36446214) | |
| 1353-1511, gnl|Hg17|chr3 (51942658-51942500) | |
| 1353-1511, gnl|Mm7|chr9 (106214697-106214851) |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-109, gnl|bosTau2|chr22 (36454066-36453965) | |
| 8-109, gnl|canFam2|chr20 (40770419-40770167) | |
| 8-109, gnl|dasNov1|scaffold_18091 (13039-12808) | |
| 8-109, gnl|echTel1|scaffold_305754 (3354-3603) | |
| 8-109, gnl|hg17|chr3 (51950681-51950932) | |
| 8-109, gnl|Hg17|chr3 (51950937-51950836) | |
| 8-109, gnl|loxAfr1|scaffold_531 (118325-118073) | |
| 8-109, gnl|mm7|chr9 (106207035-106206792) | |
| 8-109, gnl|Mm7|chr9 (106206782-106206883) | |
| 8-109, gnl|monDom2|scaffold_5 (71785435-71785267) | |
| 8-109, gnl|oryCun1|scaffold_146450 (5168-4929) | |
| 8-109, gnl|panTro1|chr2 (53559593-53559844) | |
| 8-109, gnl|rheMac2|chr2 (84456687-84456450) | |
| 8-109, gnl|rn3|chr8 (111641718-111641468) | |
| 194-326, gnl|bosTau2|chr22 (36450533-36450401) | |
| 194-326, gnl|Hg17|chr3 (51947258-51947127) | |
| 194-326, gnl|Mm7|chr9 (106210146-106210279) | |
| 410-539, gnl|bosTau2|chr22 (36449563-36449434) | |
| 410-539, gnl|canFam2|chr20 (40776603-40776431) | |
| 410-539, gnl|danRer3|chr11 (38591199-38591049) | |
| 410-539, gnl|fr1|chrUn (44902395-44902251) | |
| 410-539, gnl|galGal2|chr12 (49774-49624) | |
| 410-539, gnl|hg17|chr3 (51946242-51946415) | |
| 410-539, gnl|Hg17|chr3 (51946376-51946247) | |
| 410-539, gnl|loxAfr1|scaffold_531 (122160-122001) | |
| 410-539, gnl|mm7|chr9 (106211342-106211168) | |
| 410-539, gnl|Mm7|chr9 (106211206-106211335) | |
| 410-539, gnl|monDom2|scaffold_5 (71801123-71800955) | |
| 410-539, gnl|oryCun1|scaffold_172607 (46098-46270) | |
| 410-539, gnl|panTro1|chr2 (53555155-53555328) | |
| 410-539, gnl|rheMac2|chr2 (84461624-84461451) | |
| 410-539, gnl|rn3|chr8 (111647144-111646971) | |
| 410-539, gnl|tetNig1|chr11 (4828630-4828772) | |
| 410-539, gnl|xenTro1|scaffold_189 (1676215-1676364) | |
| 756-857, gnl|bosTau2|chr22 (36448141-36448040) | |
| 756-857, gnl|canFam2|chr20 (40777896-40777785) | |
| 756-857, gnl|danRer3|chr11 (38593524-38593413) | |
| 756-857, gnl|fr1|chrUn (44902985-44902869) | |
| 756-857, gnl|galGal2|chr12 (51172-51061) | |
| 756-857, gnl|hg17|chr3 (51944640-51944751) | |
| 756-857, gnl|Hg17|chr3 (51944749-51944648) | |
| 756-857, gnl|loxAfr1|scaffold_531 (123599-123488) | |
| 756-857, gnl|mm7|chr9 (106213115-106213004) | |
| 756-857, gnl|Mm7|chr9 (106213004-106213105) | |
| 756-857, gnl|monDom2|scaffold_5 (71802111-71802000) | |
| 756-857, gnl|oryCun1|scaffold_172607 (44750-44863) | |
| 756-857, gnl|panTro1|chr2 (53553554-53553665) | |
| 756-857, gnl|rheMac2|chr2 (84463152-84463041) | |
| 756-857, gnl|rn3|chr8 (111648642-111648531) | |
| 756-857, gnl|tetNig1|chr11 (4828017-4828126) | |
| 756-857, gnl|xenTro1|scaffold_189 (1675635-1675716) | |
| 858-993, gnl|bosTau2|chr22 (36447955-36447820) | |
| 858-993, gnl|canFam2|chr20 (40778124-40777950) | |
| 858-993, gnl|danRer3|chr11 (38596340-38596173) | |
| 858-993, gnl|fr1|chrUn (44903202-44903037) | |
| 858-993, gnl|galGal2|chr12 (51443-51254) | |
| 858-993, gnl|hg17|chr3 (51944384-51944558) | |
| 858-993, gnl|Hg17|chr3 (51944532-51944397) | |
| 858-993, gnl|loxAfr1|scaffold_531 (123823-123653) | |
| 858-993, gnl|mm7|chr9 (106213345-106213175) | |
| 858-993, gnl|Mm7|chr9 (106213195-106213330) | |
| 858-993, gnl|monDom2|scaffold_5 (71802997-71802780) | |
| 858-993, gnl|oryCun1|scaffold_172607 (44527-44697) | |
| 858-993, gnl|panTro1|chr2 (53553310-53553484) | |
| 858-993, gnl|rheMac2|chr2 (84463399-84463230) | |
| 858-993, gnl|rn3|chr8 (111648873-111648706) | |
| 858-993, gnl|tetNig1|chr11 (4827792-4827946) | |
| 858-993, gnl|xenTro1|scaffold_189 (1674554-1674715) | |
| 1057-1202, gnl|bosTau2|chr22 (36447456-36447311) | |
| 1057-1202, gnl|Hg17|chr3 (51943831-51943686) | |
| 1057-1202, gnl|Mm7|chr9 (106213660-106213809) | |
| 1353-1511, gnl|bosTau2|chr22 (36446372-36446214) | |
| 1353-1511, gnl|Hg17|chr3 (51942658-51942500) | |
| 1353-1511, gnl|Mm7|chr9 (106214697-106214851) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| elu (0.385356) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cag (0.151194) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eru (0.120048) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cag (0.151194) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eru (0.120048) |