Non-Coding RNA Search

Ss1.1-Utr1-UTR010016H08.5

Sequence:


               
               AGAAGGCTGCAGGAGGCAGCCCGGTCTCATTCTAAAGCCACCTCCTTGGGTCCTAGAAAT
TATTGAGTTTCTGGTGGGGGGAGGCGGGTAGGCAAGGTCAGAGACGAACACCCAATCCCT
CCTCTAGAGAAATCCAGGGCAGAGAGGTGGTGACTTGTCTTTGTCTTGCTGGGGTGGGGT
GAGAGAGTCCTCTCCAGCAGTGGGGAGGGTCTGGCCAAGTTTGTAGCCCAGTCTCTTGAG
GTCTTGTTTTAAAGTCTCTCCTGGTTCTCTTTTCCAGGCCCGATCACTTGAATGGACATA
TCAAGCAGGTGCACACTTCTGAGCGGCCTCACAAGTGTCAGGTGTGGGTTGGGAGCAGCA
GCGGCCTGCCGCCCCTGGAATCTCTTCCTAGCGACCTGCCATCATGGGACTTTGCCCAGC
CTGCTTTGTGGAGGTCGTCCCATTCCGTTCCTGACACCGCCTTTTCCCTTTCTCTAAAAA
AGTCCTTCCCAGCCCTCGAAAACCTGGGCCCAGCACCCTCCAGCAACGCTCTCTTCTGCC
CAGCCCCGCCGGGATATCTGCGGCAGGGCTGGACCACCCCAGAGGGCAGCCGGGCCTTTA
CCCAGTGGCCTGTCGGCTAGCCGGGGCCTCCCCAAGAGGGTTTTCTGGGGAGGGGCCTGG
CAGTGGCGGTGATCTGAGCTCTTTGCTTTTGGGAGAGGCCGCAGAGCGGTTCCTGCTCAC
TGAGCCCAGCTCCTCCCTGGGTGACCTGGACTCTTTCCCAGCTCAGGGGCCCTGGATGGA
CAGGGCAGCAAGGAGCTCCTTCTTGGGTCCCCCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGGCTGCAGGAGGCAGCCCGGTCTCATTCTAAAGCCACCTCCTTGGGTCCTAGAAAT
TATTGAGTTTCTGGTGGGGGGAGGCGGGTAGGCAAGGTCAGAGACGAACACCCAATCCCT
CCTCTAGAGAAATCCAGGGCAGAGAGGTGGTGACTTGTCTTTGTCTTGCTGGGGTGGGGT
GAGAGAGTCCTCTCCAGCAGTGGGGAGGGTCTGGCCAAGTTTGTAGCCCAGTCTCTTGAG
GTCTTGTTTTAAAGTCTCTCCTGGTTCTCTTTTCCAGGCCCGATCACTTGAATGGACATA
TCAAGCAGGTGCACACTTCTGAGCGGCCTCACAAGTGTCAGGTGTGGGTTGGGAGCAGCA
GCGGCCTGCCGCCCCTGGAATCTCTTCCTAGCGACCTGCCATCATGGGACTTTGCCCAGC
CTGCTTTGTGGAGGTCGTCCCATTCCGTTCCTGACACCGCCTTTTCCCTTTCTCTAAAAA
AGTCCTTCCCAGCCCTCGAAAACCTGGGCCCAGCACCCTCCAGCAACGCTCTCTTCTGCC
CAGCCCCGCCGGGATATCTGCGGCAGGGCTGGACCACCCCAGAGGGCAGCCGGGCCTTTA
CCCAGTGGCCTGTCGGCTAGCCGGGGCCTCCCCAAGAGGGTTTTCTGGGGAGGGGCCTGG
CAGTGGCGGTGATCTGAGCTCTTTGCTTTTGGGAGAGGCCGCAGAGCGGTTCCTGCTCAC
TGAGCCCAGCTCCTCCCTGGGTGACCTGGACTCTTTCCCAGCTCAGGGGCCCTGGATGGA
CAGGGCAGCAAGGAGCTCCTTCTTGGGTCCCCCTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-108, + strand, RNAz p=0.596689

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-108, + strand, RNAz p=0.596689

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-348, gnl|bosTau2|chr17 (43617896-43617536)
               

               
               3-348, gnl|Hg17|chr22 (30063837-30063430)
               

               
               3-348, gnl|Mm7|chr11 (3244972-3245353)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-348, gnl|bosTau2|chr17 (43617896-43617536)
               

               
               3-348, gnl|Hg17|chr22 (30063837-30063430)
               

               
               3-348, gnl|Mm7|chr11 (3244972-3245353)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	3-348, gnl\|bosTau2\|chr17 (43617896-43617536)
	3-348, gnl\|Hg17\|chr22 (30063837-30063430)
	3-348, gnl\|Mm7\|chr11 (3244972-3245353)