Non-Coding RNA Search

Ss1.1-Utr1-UTR010017D04.5

Sequence:


               
               GGGCAGAGGCAGTGCTGAACCGATCGGCCTCCTCGGGCGCGGGAACATGAAATCCAGCCC
TGAGCCCGCCGCGGGCAAGGCGCGCTGGCGGGCCTGCCCGGGTAGCTGGTGAACGGCGCG
GAGCCCCGGGACTCGTGGCCACTCCCTGCAGCCCGTCGTTCTTGCGGCGGCATGGTCTTC
TGCCTGGAGAACAACGAGCCGCGCCGCCGGCTGCGAAGCACCATGGTCCATTTCCAGGCC
TCGGAAGTCCAGCAGCTACTACACAACAAGTTCGTGGTCATCTTGGGGGACTCAATCCAG
CGGGCTGTGTATAAGGACCTAGTGCTCCTGCTCCAGAAAGACTCACTGCTCACAGCTGCC
CAGCTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCTGGAGGTCAG
CTGGGCGAACTGCACAATGGGACGCAGTATCGGGAGGTCCGCCAGTTCTGCTCGGGTTCT
GGTCACCACCTTGTGCGCTTCTACTTCCTCACCCGTGTTTACTCCGAGTACCTCGAGGGA
GTCCTGGAGGAGCTGACCTGTGGGCCTGCCCCAGACCTAGTGATCATCAATTCCTGCCTC
TGGGATCTCTCCAGGTACGGCCGCTGCTCAATGGAGGCCTACCGAGAGAACCTGGAGCGG
GTGTTCGTGCGCATGGACCAGGTGTTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCA
ATGCCCCTAGGGGAGCGTGTCACTGGGGGTTTCCTTCTGCCCGAGCTCCAGCCCCTGGCG
GGCTCTCTGCGGCGAGACGTGGTTGAAGGGAATTTCTACAGCGCCACACTGGCTGGGGAT
CACTGCTTCGATGTCCTGGACCTCCACTTTCATTTCCGACATGCAGTGCGGCACCGTCAC
CGGGATGGCATCCACTGGGACCAGCATGCCCACCGCCACCTCTCCCACTTGCTTCTGACC
CATGTGGCAAATGCCTGGGGTGTGGAGCTGCCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGAGGCAGTGCTGAACCGATCGGCCTCCTCGGGCGCGGGAACATGAAATCCAGCCC
TGAGCCCGCCGCGGGCAAGGCGCGCTGGCGGGCCTGCCCGGGTAGCTGGTGAACGGCGCG
GAGCCCCGGGACTCGTGGCCACTCCCTGCAGCCCGTCGTTCTTGCGGCGGCATGGTCTTC
TGCCTGGAGAACAACGAGCCGCGCCGCCGGCTGCGAAGCACCATGGTCCATTTCCAGGCC
TCGGAAGTCCAGCAGCTACTACACAACAAGTTCGTGGTCATCTTGGGGGACTCAATCCAG
CGGGCTGTGTATAAGGACCTAGTGCTCCTGCTCCAGAAAGACTCACTGCTCACAGCTGCC
CAGCTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCTGGAGGTCAG
CTGGGCGAACTGCACAATGGGACGCAGTATCGGGAGGTCCGCCAGTTCTGCTCGGGTTCT
GGTCACCACCTTGTGCGCTTCTACTTCCTCACCCGTGTTTACTCCGAGTACCTCGAGGGA
GTCCTGGAGGAGCTGACCTGTGGGCCTGCCCCAGACCTAGTGATCATCAATTCCTGCCTC
TGGGATCTCTCCAGGTACGGCCGCTGCTCAATGGAGGCCTACCGAGAGAACCTGGAGCGG
GTGTTCGTGCGCATGGACCAGGTGTTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCA
ATGCCCCTAGGGGAGCGTGTCACTGGGGGTTTCCTTCTGCCCGAGCTCCAGCCCCTGGCG
GGCTCTCTGCGGCGAGACGTGGTTGAAGGGAATTTCTACAGCGCCACACTGGCTGGGGAT
CACTGCTTCGATGTCCTGGACCTCCACTTTCATTTCCGACATGCAGTGCGGCACCGTCAC
CGGGATGGCATCCACTGGGACCAGCATGCCCACCGCCACCTCTCCCACTTGCTTCTGACC
CATGTGGCAAATGCCTGGGGTGTGGAGCTGCCCAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958134|emb|CAI12119.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958134|emb|CAI12119.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               135-295, gnl|bosTau2|chr13 (41406096-41405935)
               

               
               135-295, gnl|Hg17|chr20 (2768596-2768435)
               

               
               135-295, gnl|Mm7|chr2 (130164422-130164265)
               


               
               374-623, gnl|bosTau2|chr13 (41405274-41405025)
               

               
               374-623, gnl|Hg17|chr20 (2767730-2767481)
               

               
               374-623, gnl|Mm7|chr2 (130163559-130163310)
               


               
               755-996, gnl|bosTau2|chr13 (41404676-41404435)
               

               
               755-996, gnl|Hg17|chr20 (2767135-2766894)
               

               
               755-996, gnl|Mm7|chr2 (130163000-130162759)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-295, gnl|bosTau2|chr13 (41406096-41405935)
               

               
               135-295, gnl|Hg17|chr20 (2768596-2768435)
               

               
               135-295, gnl|Mm7|chr2 (130164422-130164265)
               


               
               374-623, gnl|bosTau2|chr13 (41405274-41405025)
               

               
               374-623, gnl|Hg17|chr20 (2767730-2767481)
               

               
               374-623, gnl|Mm7|chr2 (130163559-130163310)
               


               
               755-996, gnl|bosTau2|chr13 (41404676-41404435)
               

               
               755-996, gnl|Hg17|chr20 (2767135-2766894)
               

               
               755-996, gnl|Mm7|chr2 (130163000-130162759)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cga (0.279096)
               

               
               mcp (0.170648)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               mcp (0.170648)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	135-295, gnl\|bosTau2\|chr13 (41406096-41405935)
	135-295, gnl\|Hg17\|chr20 (2768596-2768435)
	135-295, gnl\|Mm7\|chr2 (130164422-130164265)

	374-623, gnl\|bosTau2\|chr13 (41405274-41405025)
	374-623, gnl\|Hg17\|chr20 (2767730-2767481)
	374-623, gnl\|Mm7\|chr2 (130163559-130163310)

	755-996, gnl\|bosTau2\|chr13 (41404676-41404435)
	755-996, gnl\|Hg17\|chr20 (2767135-2766894)
	755-996, gnl\|Mm7\|chr2 (130163000-130162759)

	cga (0.279096)
	mcp (0.170648)
	nca (0.136874)
	ebs (0.118301)
	eje (0.0988338)