Ss1.1-Utr1-UTR010018B06.5
|
CGCAGCCCAGCAGCGCAGCCGTCTTTGCGGACGCCAGCAGCCCCGCGGGCCCGCCGAGTT
TGTGCCTAAGGCAGTTCGCTCGGCCCCCTGTCCAGTTCGGCTCTCTCTCTCCTGCCAGGC
AGAAACTCCGCTGAGCAGAACTTGCCAGGATGCTTCTCCTGTTGCTCGGGATCATCGTCC
TCCACGTCGCGGTGCTGGTGCTGCTGTTTGTCTCCACGATCGTCAGCCAATGGATGGTGG
GCAATGGACATGCTACTGACCTCTGGCAAAACTGCACCACCTCCCCGTCGGGCAACGTGC
AGCACTGCTTCATGTCGTCAGCAAACGAATGGCTGCAGTCCGTCCAGGCCACCATGATCC
TGTCGGTCATCTTCAGCGTTCTGTCTCTGTTCCTGTTCTTCTGCCAGCTCTTCACCCTCA
CCAAGGGGGGCCGGTTTTACATCACCGGGGTCTTCCAGATCCTGGCTGGTCTGTGCGTGA
TGAGCGCAGCGTCCATCTACACGGTCAGGCACCTGGACTGGCATTACGGCTCGGAGAACT
CCTACGGCTTCGCCTACATCCTGGCGTGGGTGGCCTTCCCGCTGGCGCTCCTCAGCGGCG
TCGTCTACGTGATCTTGCGGAAGCGGGAGTGAGGCGCCGGGAGGGGACGTCCGGGGCTCT
GAGCGCGCGCGGGGAGGGAGGAAGCAAACCGGGAGCCGGGAGCAACCAAAGAGCCGCCCA
AACACCCAACGCCAACCAAACCAAACAGAAAGCAGCGGGGGGGTCGTGAGTGTTGACTGA
AGATGTATATAATATTGACGGTTTATAAAACCTATTTATAACACTTTTTACATATATGTA
CATAGTATTGTTCGCTTTACGTGTTGACCATCAGCCTTAGGTTGAACCTTAAAGAAATAG
CTAAGGAACTTGACATCCTAACTCTATAATCGAGCTCAGATTTTTGTTGTGTCGTGGTTT
TCGTTCTTTGGTTGGTTTTGCCCAGAAATACAAGAAGTCCATCTCACCCCTTCCCGTTCA
TCTAAGAGATACCTCCCTCCCACGCCACCTCATTTAGGACCCCCAAGTGTGGGGAGAAAC
CCCGCATGGCCCAAAGCCCTTTCCCTGTGGGTGACCCGCGTGTGACACACGGACACGCAC
TGCCCACGCCTCTGGGCACAGCCTTACCTGCACTCGGACAAAACCCCCGAACTGGAGCCC
TCGGAGAATCACGGCTCGTGGCTTTGGAACGCTCGCCCTTGAGGGCGGGGTCCCCCAGTC
ACGCCTCTAGATGAGAATTCGGTGACAACAACCTACGAAGTGGTGCTATTATTGACCATT
CCTTATGATCACTAATCATCTAAACTTCTCACTGGAAAGTCAATTAACAATTTGACGACA
GAAAGTCAAACGGAGACCTGAATAATTCTGTGTAATATAAATGGTTTATAACTGCTTTCG
TGCCTAGCTAGGCTGCTATGATTACCATAGTAAATAAACAATAAGCCCCAGCCTCTATCA
TCCCAACATGATCCGCATGGTTGGAGCATCAGGACAAGCCTCTAGACCCCCTGGGACGGT
GGGTTCCAGGCGCAGCAGGGTCTAGGCTGTCCTCCGTCTCCAAGGACTGTCTGGCAATGA
CTCGTACTGGCCACCAACTGTACATGTATATATGGTGCCCTTCTGATGCTAAGACTCCAG
ACCCTTCTCTTGCTTTTTTCCTTTTTGCTTCGCTTTTTTTCTGATTTTATACCAACTGTG
TGGACTAAGGTGCATTAAAATAAACATCAGAGTAACTCAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCAGCCCAGCAGCGCAGCCGTCTTTGCGGACGCCAGCAGCCCCGCGGGCCCGCCGAGTT
TGTGCCTAAGGCAGTTCGCTCGGCCCCCTGTCCAGTTCGGCTCTCTCTCTCCTGCCAGGC
AGAAACTCCGCTGAGCAGAACTTGCCAGGATGCTTCTCCTGTTGCTCGGGATCATCGTCC
TCCACGTCGCGGTGCTGGTGCTGCTGTTTGTCTCCACGATCGTCAGCCAATGGATGGTGG
GCAATGGACATGCTACTGACCTCTGGCAAAACTGCACCACCTCCCCGTCGGGCAACGTGC
AGCACTGCTTCATGTCGTCAGCAAACGAATGGCTGCAGTCCGTCCAGGCCACCATGATCC
TGTCGGTCATCTTCAGCGTTCTGTCTCTGTTCCTGTTCTTCTGCCAGCTCTTCACCCTCA
CCAAGGGGGGCCGGTTTTACATCACCGGGGTCTTCCAGATCCTGGCTGGTCTGTGCGTGA
TGAGCGCAGCGTCCATCTACACGGTCAGGCACCTGGACTGGCATTACGGCTCGGAGAACT
CCTACGGCTTCGCCTACATCCTGGCGTGGGTGGCCTTCCCGCTGGCGCTCCTCAGCGGCG
TCGTCTACGTGATCTTGCGGAAGCGGGAGTGAGGCGCCGGGAGGGGACGTCCGGGGCTCT
GAGCGCGCGCGGGGAGGGAGGAAGCAAACCGGGAGCCGGGAGCAACCAAAGAGCCGCCCA
AACACCCAACGCCAACCAAACCAAACAGAAAGCAGCGGGGGGGTCGTGAGTGTTGACTGA
AGATGTATATAATATTGACGGTTTATAAAACCTATTTATAACACTTTTTACATATATGTA
CATAGTATTGTTCGCTTTACGTGTTGACCATCAGCCTTAGGTTGAACCTTAAAGAAATAG
CTAAGGAACTTGACATCCTAACTCTATAATCGAGCTCAGATTTTTGTTGTGTCGTGGTTT
TCGTTCTTTGGTTGGTTTTGCCCAGAAATACAAGAAGTCCATCTCACCCCTTCCCGTTCA
TCTAAGAGATACCTCCCTCCCACGCCACCTCATTTAGGACCCCCAAGTGTGGGGAGAAAC
CCCGCATGGCCCAAAGCCCTTTCCCTGTGGGTGACCCGCGTGTGACACACGGACACGCAC
TGCCCACGCCTCTGGGCACAGCCTTACCTGCACTCGGACAAAACCCCCGAACTGGAGCCC
TCGGAGAATCACGGCTCGTGGCTTTGGAACGCTCGCCCTTGAGGGCGGGGTCCCCCAGTC
ACGCCTCTAGATGAGAATTCGGTGACAACAACCTACGAAGTGGTGCTATTATTGACCATT
CCTTATGATCACTAATCATCTAAACTTCTCACTGGAAAGTCAATTAACAATTTGACGACA
GAAAGTCAAACGGAGACCTGAATAATTCTGTGTAATATAAATGGTTTATAACTGCTTTCG
TGCCTAGCTAGGCTGCTATGATTACCATAGTAAATAAACAATAAGCCCCAGCCTCTATCA
TCCCAACATGATCCGCATGGTTGGAGCATCAGGACAAGCCTCTAGACCCCCTGGGACGGT
GGGTTCCAGGCGCAGCAGGGTCTAGGCTGTCCTCCGTCTCCAAGGACTGTCTGGCAATGA
CTCGTACTGGCCACCAACTGTACATGTATATATGGTGCCCTTCTGATGCTAAGACTCCAG
ACCCTTCTCTTGCTTTTTTCCTTTTTGCTTCGCTTTTTTTCTGATTTTATACCAACTGTG
TGGACTAAGGTGCATTAAAATAAACATCAGAGTAACTCAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
72-227, gnl|bosTau2|chr19 (23292578-23292417) |
|
72-227, gnl|canFam2|chr5 (41833210-41833409) |
|
72-227, gnl|dasNov1|scaffold_731 (56604-56792) |
|
72-227, gnl|echTel1|scaffold_279756 (108349-108489) |
|
72-227, gnl|hg17|chr17 (15104685-15104884) |
|
72-227, gnl|Hg17|chr17 (15104841-15104692) |
|
72-227, gnl|mm7|chr11 (63214819-63214648) |
|
72-227, gnl|panTro1|chr19_random (23182788-23182589) |
|
72-227, gnl|rheMac2|chr16 (14985197-14985396) |
|
72-227, gnl|rn3|chr10 (49323695-49323524) |
|
72-227, gnl|tetNig1|chr2 (451698-451503) |
| |
|
468-1779, gnl|bosTau2|chr19 (23270071-23268750) |
|
468-1779, gnl|Hg17|chr17 (15075123-15073821) |
|
468-1779, gnl|Mm7|chr11 (63239817-63241113) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
72-227, gnl|bosTau2|chr19 (23292578-23292417) |
|
72-227, gnl|canFam2|chr5 (41833210-41833409) |
|
72-227, gnl|dasNov1|scaffold_731 (56604-56792) |
|
72-227, gnl|echTel1|scaffold_279756 (108349-108489) |
|
72-227, gnl|hg17|chr17 (15104685-15104884) |
|
72-227, gnl|Hg17|chr17 (15104841-15104692) |
|
72-227, gnl|mm7|chr11 (63214819-63214648) |
|
72-227, gnl|panTro1|chr19_random (23182788-23182589) |
|
72-227, gnl|rheMac2|chr16 (14985197-14985396) |
|
72-227, gnl|rn3|chr10 (49323695-49323524) |
|
72-227, gnl|tetNig1|chr2 (451698-451503) |
| |
|
468-1779, gnl|bosTau2|chr19 (23270071-23268750) |
|
468-1779, gnl|Hg17|chr17 (15075123-15073821) |
|
468-1779, gnl|Mm7|chr11 (63239817-63241113) |
|
cov (0.396458) |
|
elu (0.385356) |
|
bla (0.373042) |
|
eye (0.341006) |
|
jej (0.296765) |
|
ese (0.253004) |
|
jca (0.22792) |
|
nms (0.213858) |
|
mas (0.210305) |
|
col (0.195008) |
|
gul (0.177588) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
lun (0.150489) |
|
nca (0.136874) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
eep (0.122564) |
|
cly (0.120642) |
|
spc (0.113366) |
|
cty (0.10408) |
|
cov (0.396458) |
|
elu (0.385356) |
|
bla (0.373042) |
|
eye (0.341006) |
|
jej (0.296765) |
|
ese (0.253004) |
|
jca (0.22792) |
|
nms (0.213858) |
|
mas (0.210305) |
|
col (0.195008) |
|
gul (0.177588) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
lun (0.150489) |
|
nca (0.136874) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
eep (0.122564) |
|
cly (0.120642) |
|
spc (0.113366) |
|
cty (0.10408) |
