Ss1.1-Utr1-UTR010018D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCGCCGGCAGGAAGCAGTACGGCGCCCCCACGGACTACGGCTTCTGCATCAAGCCCAA CAGGGTCAGGACCGAGGCCAAAGAGCTGCGCTTGCTCTGCGCCGAGGACGAGCAGAGCCG GACGTGCTGGATGACGGCCTTCAGGCTCCTCAAGTACGGAATGCTCCTCTACCAGAACTA CAGGGTCCCGCAGCAGAGGAAGGCCGTGCTGTCCCCCTTCTCAGCTCCCGTGCGCAGCGT CTCTGAGAACTCCCTCGTGGCGATGGATTTTTCTGGGCAAACGGGAAGAGTCATCGAGAA CCCGGCCGAGGCCCAGAGTGCAGCGCTGGAAGAAGGCCACGCCTGGAGGAAGCGAAGCAC GCGGATGAATATCCTAGGTAGCCAAAGCCCCCTCCACCCTTCTACCCTAAGTACAGTGAT TCACAGGACGCAGCACTGGTTCCACGGCAGGATCTCCCGGGAGGAGTCGCACCGCATCAT CAAGCAGCAAGGGCTGGTGGATGGGCTTTTTCTCCTCCGTGACAGCCAGAGTAATCCAAA GGCATTTGTCCTCACACTGTGTCATCATCAGAAAATCAAAAACTTCCAGATCTTACCTTG CGAGGATGACGGGCAGACCTTCTTCAGCCTCGACGATGGGAACACCAAATTCTCCGACTT GATCCAGCTCGTTGACTTCTACCAGCTGAACAAAGGAGTCCTGCCTTGCAAACTCAAGCA CCACTGCATCCGAGTGGCCTTATGACCTCAGACCCGCCCTTGGCTGCAGACTGGAGGGGC CGACACTGGAACCAGGAGGTCCGTGCATCGTTCAGAACGCGCGCTGTCTCTACCTGGGGA CTCAGAGCAAGATCCGTTCGTTCTGTGCCGACCGACCGAGGTTGGCTGGTTTGTTGGACT CGAGGCTGATCTGCTGCTGCAGATCCAGCAGGGCCGCCGCGCTCGCGCCACCTCTTCCAC GAGGGCGCGGGGGAGCAAATTCGAGAATAAGCTGGGGTGACGGTCTTGGCCGGGCCGCGG CAGCGCCAGAGGCGGAGAGGAGTGGTTGGAAATGAACTCTTGCCCTGGAATAACCTTGAC AATTAAAACCGCTATGTTTACAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCGCCGGCAGGAAGCAGTACGGCGCCCCCACGGACTACGGCTTCTGCATCAAGCCCAA CAGGGTCAGGACCGAGGCCAAAGAGCTGCGCTTGCTCTGCGCCGAGGACGAGCAGAGCCG GACGTGCTGGATGACGGCCTTCAGGCTCCTCAAGTACGGAATGCTCCTCTACCAGAACTA CAGGGTCCCGCAGCAGAGGAAGGCCGTGCTGTCCCCCTTCTCAGCTCCCGTGCGCAGCGT CTCTGAGAACTCCCTCGTGGCGATGGATTTTTCTGGGCAAACGGGAAGAGTCATCGAGAA CCCGGCCGAGGCCCAGAGTGCAGCGCTGGAAGAAGGCCACGCCTGGAGGAAGCGAAGCAC GCGGATGAATATCCTAGGTAGCCAAAGCCCCCTCCACCCTTCTACCCTAAGTACAGTGAT TCACAGGACGCAGCACTGGTTCCACGGCAGGATCTCCCGGGAGGAGTCGCACCGCATCAT CAAGCAGCAAGGGCTGGTGGATGGGCTTTTTCTCCTCCGTGACAGCCAGAGTAATCCAAA GGCATTTGTCCTCACACTGTGTCATCATCAGAAAATCAAAAACTTCCAGATCTTACCTTG CGAGGATGACGGGCAGACCTTCTTCAGCCTCGACGATGGGAACACCAAATTCTCCGACTT GATCCAGCTCGTTGACTTCTACCAGCTGAACAAAGGAGTCCTGCCTTGCAAACTCAAGCA CCACTGCATCCGAGTGGCCTTATGACCTCAGACCCGCCCTTGGCTGCAGACTGGAGGGGC CGACACTGGAACCAGGAGGTCCGTGCATCGTTCAGAACGCGCGCTGTCTCTACCTGGGGA CTCAGAGCAAGATCCGTTCGTTCTGTGCCGACCGACCGAGGTTGGCTGGTTTGTTGGACT CGAGGCTGATCTGCTGCTGCAGATCCAGCAGGGCCGCCGCGCTCGCGCCACCTCTTCCAC GAGGGCGCGGGGGAGCAAATTCGAGAATAAGCTGGGGTGACGGTCTTGGCCGGGCCGCGG CAGCGCCAGAGGCGGAGAGGAGTGGTTGGAAATGAACTCTTGCCCTGGAATAACCTTGAC AATTAAAACCGCTATGTTTACAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 43-154, gnl|bosTau2|chr4 (265463-265353) | |
| 43-154, gnl|canFam2|chr18 (4892211-4892334) | |
| 43-154, gnl|danRer3|chr5 (42831755-42831872) | |
| 43-154, gnl|dasNov1|scaffold_27884 (10203-10328) | |
| 43-154, gnl|fr1|chrUn (27388857-27388753) | |
| 43-154, gnl|galGal2|chr2 (80805653-80805786) | |
| 43-154, gnl|hg17|chr7 (50454634-50454767) | |
| 43-154, gnl|Hg17|chr7 (50454761-50454647) | |
| 43-154, gnl|loxAfr1|scaffold_1928 (115023-115146) | |
| 43-154, gnl|mm7|chr11 (11895880-11896008) | |
| 43-154, gnl|Mm7|chr11 (11896000-11895890) | |
| 43-154, gnl|monDom2|scaffold_5 (61126340-61126215) | |
| 43-154, gnl|oryCun1|scaffold_173057 (79088-79228) | |
| 43-154, gnl|panTro1|chr6 (52093364-52093497) | |
| 43-154, gnl|rheMac2|chr3 (75750032-75749899) | |
| 43-154, gnl|rn3|chr14 (92847029-92847157) | |
| 43-154, gnl|tetNig1|chr21 (4368743-4368849) | |
| 43-154, gnl|xenTro1|scaffold_26 (2730805-2730945) | |
| 232-349, gnl|bosTau2|chr4 (253123-253006) | |
| 232-349, gnl|canFam2|chr18 (4885262-4885409) | |
| 232-349, gnl|danRer3|chr5 (42826856-42826985) | |
| 232-349, gnl|dasNov1|scaffold_27884 (3902-4050) | |
| 232-349, gnl|echTel1|scaffold_195130 (12680-12811) | |
| 232-349, gnl|fr1|chrUn (27389500-27389351) | |
| 232-349, gnl|galGal2|chr2 (80801570-80801717) | |
| 232-349, gnl|hg17|chr7 (50447195-50447342) | |
| 232-349, gnl|Hg17|chr7 (50447313-50447196) | |
| 232-349, gnl|loxAfr1|scaffold_77779 (4521-4669) | |
| 232-349, gnl|mm7|chr11 (11889814-11889961) | |
| 232-349, gnl|Mm7|chr11 (11889932-11889815) | |
| 232-349, gnl|monDom2|scaffold_5 (61135797-61135648) | |
| 232-349, gnl|oryCun1|scaffold_173057 (74784-74930) | |
| 232-349, gnl|panTro1|chr6 (52085872-52086019) | |
| 232-349, gnl|rheMac2|chr3 (75757510-75757363) | |
| 232-349, gnl|rn3|chr14 (92841192-92841339) | |
| 232-349, gnl|tetNig1|chr21 (4368181-4368302) | |
| 232-349, gnl|xenTro1|scaffold_26 (2729104-2729236) | |
| 599-1101, gnl|bosTau2|chr4 (240754-240249) | |
| 599-1101, gnl|Hg17|chr7 (50435004-50434485) | |
| 599-1101, gnl|Mm7|chr11 (11885617-11885101) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-154, gnl|bosTau2|chr4 (265463-265353) | |
| 43-154, gnl|canFam2|chr18 (4892211-4892334) | |
| 43-154, gnl|danRer3|chr5 (42831755-42831872) | |
| 43-154, gnl|dasNov1|scaffold_27884 (10203-10328) | |
| 43-154, gnl|fr1|chrUn (27388857-27388753) | |
| 43-154, gnl|galGal2|chr2 (80805653-80805786) | |
| 43-154, gnl|hg17|chr7 (50454634-50454767) | |
| 43-154, gnl|Hg17|chr7 (50454761-50454647) | |
| 43-154, gnl|loxAfr1|scaffold_1928 (115023-115146) | |
| 43-154, gnl|mm7|chr11 (11895880-11896008) | |
| 43-154, gnl|Mm7|chr11 (11896000-11895890) | |
| 43-154, gnl|monDom2|scaffold_5 (61126340-61126215) | |
| 43-154, gnl|oryCun1|scaffold_173057 (79088-79228) | |
| 43-154, gnl|panTro1|chr6 (52093364-52093497) | |
| 43-154, gnl|rheMac2|chr3 (75750032-75749899) | |
| 43-154, gnl|rn3|chr14 (92847029-92847157) | |
| 43-154, gnl|tetNig1|chr21 (4368743-4368849) | |
| 43-154, gnl|xenTro1|scaffold_26 (2730805-2730945) | |
| 232-349, gnl|bosTau2|chr4 (253123-253006) | |
| 232-349, gnl|canFam2|chr18 (4885262-4885409) | |
| 232-349, gnl|danRer3|chr5 (42826856-42826985) | |
| 232-349, gnl|dasNov1|scaffold_27884 (3902-4050) | |
| 232-349, gnl|echTel1|scaffold_195130 (12680-12811) | |
| 232-349, gnl|fr1|chrUn (27389500-27389351) | |
| 232-349, gnl|galGal2|chr2 (80801570-80801717) | |
| 232-349, gnl|hg17|chr7 (50447195-50447342) | |
| 232-349, gnl|Hg17|chr7 (50447313-50447196) | |
| 232-349, gnl|loxAfr1|scaffold_77779 (4521-4669) | |
| 232-349, gnl|mm7|chr11 (11889814-11889961) | |
| 232-349, gnl|Mm7|chr11 (11889932-11889815) | |
| 232-349, gnl|monDom2|scaffold_5 (61135797-61135648) | |
| 232-349, gnl|oryCun1|scaffold_173057 (74784-74930) | |
| 232-349, gnl|panTro1|chr6 (52085872-52086019) | |
| 232-349, gnl|rheMac2|chr3 (75757510-75757363) | |
| 232-349, gnl|rn3|chr14 (92841192-92841339) | |
| 232-349, gnl|tetNig1|chr21 (4368181-4368302) | |
| 232-349, gnl|xenTro1|scaffold_26 (2729104-2729236) | |
| 599-1101, gnl|bosTau2|chr4 (240754-240249) | |
| 599-1101, gnl|Hg17|chr7 (50435004-50434485) | |
| 599-1101, gnl|Mm7|chr11 (11885617-11885101) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ton (0.1755) | |
| eli (0.151814) | |
| lun (0.150489) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| cly (0.120642) | |
| eru (0.120048) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ton (0.1755) | |
| eli (0.151814) | |
| lun (0.150489) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| cly (0.120642) | |
| eru (0.120048) | |
| cty (0.10408) | |
| ldo (0.0970026) |