Non-Coding RNA Search

Ss1.1-Utr1-UTR010018E07.5

Sequence:


               
               ACGAGCTCATTAAAAAAAACAAGTTCCAGGGTTTCAGCATCCAGCTCGTACGCAAGTTTG
CCCAGTCCATCTTGCAGTCCCTGGATGCTCTCCACAAAAATAAGATCATTCACTGTGACC
TGAAGCCAGAAAACATTCTCCTGAAACACCACGGGCGCAGCGCGACCAAGGTCATTGACT
TCGGGTCCAGCTGTTTCGAGTACCAGAAGCTTTACACGTATATCCAGTCTCGGTTCTACA
GAGCTCCCGAGATCATCCTGGGAAGCCGCTATAGCACGCCCATTGACATATGGAGTTTTG
GCTGTATCTTGGCAGAACTTTTAACAGGGCAGCCTCTCTTCCCTGGAGAGGATGAAGGAG
ACCAGCTGGCCTGTATGATGGAGCTTCTAGGGATGCCTCCACCAAAGCTCCTGGAGCAGT
CCAAACGTGCCAAGTACTTCATTAACTCCAAGGGCCTACCTCGCTACTGTTCTGTGACCA
CTCAGGCAGATGGGAGGGTTGTGCTTGTCGGGGGTCGTTCGCGGAGGGGTAAGAAGCGGG
GCCCCCCAGGCAGCAAAGACTGGGTGACAGCTCTGAAAGGGTGTGATGACTACTTATTTA
TAGAGTTTCTGAAAAGGTGTCTTCAGTGGGACCCCTCTGCCCGCCTGACCCCAGCTCAAG
CATTAAGACACCCTTGGATTAGCAAGTCTGTGCCCAGACCTCTCACCATTGAAAAGGTGT
CAGGCAAACGGGTAGTAAATCCTGCAAATGCTTTCCAGGGTCTGGGCTCCAAGCTGCCTC
CAGTTGTAGGAATAGCCAGTAAGCTTACAGCTAACTTAATGTCAGAAACCAGCAGTGGTA
TACCTCTGAGCAGTGTCTTGCCAAAACTGATTAGCTAGCGGACAGTGATGTGCTTGGAGA
TGTGTATGTGTGTATTTTTAATTACCTTGCCAACCTGAAAATGAGAAAAAAAAAGAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGAGCTCATTAAAAAAAACAAGTTCCAGGGTTTCAGCATCCAGCTCGTACGCAAGTTTG
CCCAGTCCATCTTGCAGTCCCTGGATGCTCTCCACAAAAATAAGATCATTCACTGTGACC
TGAAGCCAGAAAACATTCTCCTGAAACACCACGGGCGCAGCGCGACCAAGGTCATTGACT
TCGGGTCCAGCTGTTTCGAGTACCAGAAGCTTTACACGTATATCCAGTCTCGGTTCTACA
GAGCTCCCGAGATCATCCTGGGAAGCCGCTATAGCACGCCCATTGACATATGGAGTTTTG
GCTGTATCTTGGCAGAACTTTTAACAGGGCAGCCTCTCTTCCCTGGAGAGGATGAAGGAG
ACCAGCTGGCCTGTATGATGGAGCTTCTAGGGATGCCTCCACCAAAGCTCCTGGAGCAGT
CCAAACGTGCCAAGTACTTCATTAACTCCAAGGGCCTACCTCGCTACTGTTCTGTGACCA
CTCAGGCAGATGGGAGGGTTGTGCTTGTCGGGGGTCGTTCGCGGAGGGGTAAGAAGCGGG
GCCCCCCAGGCAGCAAAGACTGGGTGACAGCTCTGAAAGGGTGTGATGACTACTTATTTA
TAGAGTTTCTGAAAAGGTGTCTTCAGTGGGACCCCTCTGCCCGCCTGACCCCAGCTCAAG
CATTAAGACACCCTTGGATTAGCAAGTCTGTGCCCAGACCTCTCACCATTGAAAAGGTGT
CAGGCAAACGGGTAGTAAATCCTGCAAATGCTTTCCAGGGTCTGGGCTCCAAGCTGCCTC
CAGTTGTAGGAATAGCCAGTAAGCTTACAGCTAACTTAATGTCAGAAACCAGCAGTGGTA
TACCTCTGAGCAGTGTCTTGCCAAAACTGATTAGCTAGCGGACAGTGATGTGCTTGGAGA
TGTGTATGTGTGTATTTTTAATTACCTTGCCAACCTGAAAATGAGAAAAAAAAAGAAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824200|ref|XP_581393.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824200|ref|XP_581393.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               282-401, - strand, RNAz p=0.648451
               

               
               522-641, + strand, RNAz p=0.507918

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-401, - strand, RNAz p=0.648451
               

               
               522-641, + strand, RNAz p=0.507918

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-960, gnl|bosTau2|chr16 (3173107-3174062)
               

               
               3-960, gnl|Hg17|chr1 (203209827-203210783)
               

               
               3-960, gnl|Mm7|chr1 (131033668-131032710)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-960, gnl|bosTau2|chr16 (3173107-3174062)
               

               
               3-960, gnl|Hg17|chr1 (203209827-203210783)
               

               
               3-960, gnl|Mm7|chr1 (131033668-131032710)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.623441)
               

               
               rec (0.17307)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               rec (0.17307)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

	282-401, - strand, RNAz p=0.648451
	522-641, + strand, RNAz p=0.507918

	3-960, gnl\|bosTau2\|chr16 (3173107-3174062)
	3-960, gnl\|Hg17\|chr1 (203209827-203210783)
	3-960, gnl\|Mm7\|chr1 (131033668-131032710)