Non-Coding RNA Search

Ss1.1-Utr1-UTR010018G07.5

Sequence:


               
               GCTTCACAACTCAGGAGATGCTGATTACAATAACGCCACCGGTTACCTCACGAGGAACCC
AGCGTATCCCCAGCGAGCCGCCGGTGCTCCCTGACACCCCTACGGCTCCTCAGCCCACAG
GCTCTGCCTCAGGACCCAGGACCGCACCTCCCGCCCGGGGCCCCACGCGTTCCAGCCCTC
GGCTGGTGTCGGCAGCCTCTCCCACCGCCAGCCTCCCTCCTCCCGCCTCAGCAAGCGGGG
TAGAGATACAGTGCAGTGCTCCTGAAAGGCTGAGTGAGGAGACGTTCGTCCTGAACTTCT
CCAAAGCCGACCTCTGTAAGTCAAGCCCCGTGGGAGCGAAGCTGTATACGCTTCTGTGCC
AGGCGGCAAAAGCCACCTTCAACCCATCTCAAGATCAGTGCAATATTCAGCTGGCACCTG
TTCCGGAAATCCAGTCAGTGGCCGTCAAATCCATCACCATCCACACAAAGCTCTGTCCCA
AGGACACGTTCGAGTTGCTGAAGAACAAGTGGGCTGACCTAAAAGAGGTGGGAGTCACAA
ACATGCAGTTGGGTGACCAAGGGCCACCAGAGGAGACGGAGGACCGGTTCAGCATGCCCC
TCATCATCACCATTGTCTGCATGGCATCCTTCTTGCTCCTGGTCGCGGCCCTCTACGGCT
GCTGCCACCAGCGCCTCTCCCAGAGGAAGGACCAGGTGAGGCCCTCGTCCCCCAGCCAGG
AAGCAGCCCGGTTCACCGGAGGACTCTCACCCCGTTACTCCCATGTTTGAGGAAAGCCAG
GGGGCTGCGGTCCCTTTCTGACAGGCAGAGGTCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCACAACTCAGGAGATGCTGATTACAATAACGCCACCGGTTACCTCACGAGGAACCC
AGCGTATCCCCAGCGAGCCGCCGGTGCTCCCTGACACCCCTACGGCTCCTCAGCCCACAG
GCTCTGCCTCAGGACCCAGGACCGCACCTCCCGCCCGGGGCCCCACGCGTTCCAGCCCTC
GGCTGGTGTCGGCAGCCTCTCCCACCGCCAGCCTCCCTCCTCCCGCCTCAGCAAGCGGGG
TAGAGATACAGTGCAGTGCTCCTGAAAGGCTGAGTGAGGAGACGTTCGTCCTGAACTTCT
CCAAAGCCGACCTCTGTAAGTCAAGCCCCGTGGGAGCGAAGCTGTATACGCTTCTGTGCC
AGGCGGCAAAAGCCACCTTCAACCCATCTCAAGATCAGTGCAATATTCAGCTGGCACCTG
TTCCGGAAATCCAGTCAGTGGCCGTCAAATCCATCACCATCCACACAAAGCTCTGTCCCA
AGGACACGTTCGAGTTGCTGAAGAACAAGTGGGCTGACCTAAAAGAGGTGGGAGTCACAA
ACATGCAGTTGGGTGACCAAGGGCCACCAGAGGAGACGGAGGACCGGTTCAGCATGCCCC
TCATCATCACCATTGTCTGCATGGCATCCTTCTTGCTCCTGGTCGCGGCCCTCTACGGCT
GCTGCCACCAGCGCCTCTCCCAGAGGAAGGACCAGGTGAGGCCCTCGTCCCCCAGCCAGG
AAGCAGCCCGGTTCACCGGAGGACTCTCACCCCGTTACTCCCATGTTTGAGGAAAGCCAG
GGGGCTGCGGTCCCTTTCTGACAGGCAGAGGTCGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               605-759, - strand, RNAz p=0.961023

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               605-759, - strand, RNAz p=0.961023

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               526-813, gnl|bosTau2|chr4 (52201565-52201828)
               

               
               526-813, gnl|Hg17|chr7 (130648051-130647754)
               

               
               526-813, gnl|Mm7|chr6 (31454773-31454496)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               526-813, gnl|bosTau2|chr4 (52201565-52201828)
               

               
               526-813, gnl|Hg17|chr7 (130648051-130647754)
               

               
               526-813, gnl|Mm7|chr6 (31454773-31454496)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	526-813, gnl\|bosTau2\|chr4 (52201565-52201828)
	526-813, gnl\|Hg17\|chr7 (130648051-130647754)
	526-813, gnl\|Mm7\|chr6 (31454773-31454496)