Ss1.1-Utr1-UTR010019A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCGGGCCGATCATGGACGCTTGACAACCTGCGGGCAGGCGCCGGGAGGCCACGCCAGC GACCGAGAGGACGGAGAGGCGGCGAGGACAGATCTCAAGGCCAGAGAATGGCTGGTGAAC AGAAACCCTCAAGTAACCTCCTGGAACAGTTTATTTTACTCGCCAAAGGTACCAGTGGCT CAGCCCTCACTGCTCTCATAAGCCAAGTTTTAGAGGCTCCTGGAGTATATGTCTTTGGAG AACTGCTGGAGCTGGCCAATGTGCAGGAGCTTGCAGAAGGAGCTAATGCTGCTTATTTGC AGTTGCTGAATCTGTTTGCCTATGGAACATACCCAGATTACATAGCCAACAAGGAGAGCC TGCCAGAACTGAGCACAGCTCAGCAGAACAAGCTGAAACACCTTACCATCGTGAGCTTGG CATCGAGGATGAAGTGTATCCCCTACTCCGTGCTGCTGAGGGACCTGGAGATGCGGAACC TCCGGGAACTGGAAGACCTCATCATCGAGGCTGTCTACACGGATATCATCCAGGGCAAGC TGGACCAGCGAAACCAGCTGCTGGAAGTGGATTTCTGCATTGGCCGTGACATCCGAAAGA AAGATATTAATAATATTGTCAAGACCTTGCATGAATGGTGAGGCTCAGAGAGGAAGTGCC CCCTTCTTTAGGAAGGGGGTATCTGGCCTGCCCTTTGTGCCTTTGTTTGGGGAGATGCGG TCCTCAGTTACCACCTGCAGCTATGTAAGGGCCTTGGGACAGTAAGCTAGAGAGCTGGGC TACCTTTGTGACTACAGCTGTGTGACAGCAGGAATCATTTCCGGCTTCCTAGTGTCTTGG TTGTAAAATAGTCCTTGTCCTTTGCTGTTGGGGGGCTCTTTAGCAGGCCATAAAATGCCT AGGGTTGGCAGGTGGAGTCTTTGAAGCCTCACCATGTGACAATGAGCCTGTGCTTTGCAA ACTTACCCTCAGAGCTTAAGCTCAGGAAGTTTATGTTGGTCAGATTCTTGGGAAAAGAGA ACCCGTGTTCAGCATTAGTAACATTGCTAAAAAAATGTAAAACAATGTGAAGGGTATTTA CACAGACACACACACAGAATATTTGATAACTGTATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCGGGCCGATCATGGACGCTTGACAACCTGCGGGCAGGCGCCGGGAGGCCACGCCAGC GACCGAGAGGACGGAGAGGCGGCGAGGACAGATCTCAAGGCCAGAGAATGGCTGGTGAAC AGAAACCCTCAAGTAACCTCCTGGAACAGTTTATTTTACTCGCCAAAGGTACCAGTGGCT CAGCCCTCACTGCTCTCATAAGCCAAGTTTTAGAGGCTCCTGGAGTATATGTCTTTGGAG AACTGCTGGAGCTGGCCAATGTGCAGGAGCTTGCAGAAGGAGCTAATGCTGCTTATTTGC AGTTGCTGAATCTGTTTGCCTATGGAACATACCCAGATTACATAGCCAACAAGGAGAGCC TGCCAGAACTGAGCACAGCTCAGCAGAACAAGCTGAAACACCTTACCATCGTGAGCTTGG CATCGAGGATGAAGTGTATCCCCTACTCCGTGCTGCTGAGGGACCTGGAGATGCGGAACC TCCGGGAACTGGAAGACCTCATCATCGAGGCTGTCTACACGGATATCATCCAGGGCAAGC TGGACCAGCGAAACCAGCTGCTGGAAGTGGATTTCTGCATTGGCCGTGACATCCGAAAGA AAGATATTAATAATATTGTCAAGACCTTGCATGAATGGTGAGGCTCAGAGAGGAAGTGCC CCCTTCTTTAGGAAGGGGGTATCTGGCCTGCCCTTTGTGCCTTTGTTTGGGGAGATGCGG TCCTCAGTTACCACCTGCAGCTATGTAAGGGCCTTGGGACAGTAAGCTAGAGAGCTGGGC TACCTTTGTGACTACAGCTGTGTGACAGCAGGAATCATTTCCGGCTTCCTAGTGTCTTGG TTGTAAAATAGTCCTTGTCCTTTGCTGTTGGGGGGCTCTTTAGCAGGCCATAAAATGCCT AGGGTTGGCAGGTGGAGTCTTTGAAGCCTCACCATGTGACAATGAGCCTGTGCTTTGCAA ACTTACCCTCAGAGCTTAAGCTCAGGAAGTTTATGTTGGTCAGATTCTTGGGAAAAGAGA ACCCGTGTTCAGCATTAGTAACATTGCTAAAAAAATGTAAAACAATGTGAAGGGTATTTA CACAGACACACACACAGAATATTTGATAACTGTATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 445-563, - strand, RNAz p=0.641136 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 445-563, - strand, RNAz p=0.641136 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 86-269, gnl|bosTau2|chr2 (73745127-73744944) | |
| 86-269, gnl|Hg17|chr2 (232478764-232478947) | |
| 86-269, gnl|Mm7|chr1 (86489834-86490017) | |
| 433-679, gnl|bosTau2|chr5 (60504143-60503896) | |
| 433-679, gnl|Hg17|chr12 (6708672-6708948) | |
| 433-679, gnl|Mm7|chr6 (124986989-124986736) | |
| 445-669, gnl|bosTau2|chr2 (73735743-73735518) | |
| 445-669, gnl|canFam2|chr25 (46650786-46650996) | |
| 445-669, gnl|danRer3|chr16 (21915092-21914882) | |
| 445-669, gnl|dasNov1|scaffold_24275 (33148-32938) | |
| 445-669, gnl|echTel1|scaffold_272405 (5474-5271) | |
| 445-669, gnl|fr1|chrUn (247278781-247278571) | |
| 445-669, gnl|galGal2|chr9 (14733294-14733504) | |
| 445-669, gnl|hg17|chr2 (232486319-232486529) | |
| 445-669, gnl|Hg17|chr2 (232486331-232486537) | |
| 445-669, gnl|loxAfr1|scaffold_95119 (5769-5979) | |
| 445-669, gnl|mm7|chr1 (86499677-86499887) | |
| 445-669, gnl|Mm7|chr1 (86499690-86499900) | |
| 445-669, gnl|monDom2|scaffold_167 (339735-339945) | |
| 445-669, gnl|oryCun1|scaffold_141724 (7293-7500) | |
| 445-669, gnl|panTro1|chr13 (123117023-123117233) | |
| 445-669, gnl|rheMac2|chr12 (95675099-95675309) | |
| 445-669, gnl|rn3|chr9 (85555440-85555650) | |
| 445-669, gnl|tetNig1|chr8 (9186038-9186248) | |
| 445-669, gnl|xenTro1|scaffold_589 (266220-266430) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-269, gnl|bosTau2|chr2 (73745127-73744944) | |
| 86-269, gnl|Hg17|chr2 (232478764-232478947) | |
| 86-269, gnl|Mm7|chr1 (86489834-86490017) | |
| 433-679, gnl|bosTau2|chr5 (60504143-60503896) | |
| 433-679, gnl|Hg17|chr12 (6708672-6708948) | |
| 433-679, gnl|Mm7|chr6 (124986989-124986736) | |
| 445-669, gnl|bosTau2|chr2 (73735743-73735518) | |
| 445-669, gnl|canFam2|chr25 (46650786-46650996) | |
| 445-669, gnl|danRer3|chr16 (21915092-21914882) | |
| 445-669, gnl|dasNov1|scaffold_24275 (33148-32938) | |
| 445-669, gnl|echTel1|scaffold_272405 (5474-5271) | |
| 445-669, gnl|fr1|chrUn (247278781-247278571) | |
| 445-669, gnl|galGal2|chr9 (14733294-14733504) | |
| 445-669, gnl|hg17|chr2 (232486319-232486529) | |
| 445-669, gnl|Hg17|chr2 (232486331-232486537) | |
| 445-669, gnl|loxAfr1|scaffold_95119 (5769-5979) | |
| 445-669, gnl|mm7|chr1 (86499677-86499887) | |
| 445-669, gnl|Mm7|chr1 (86499690-86499900) | |
| 445-669, gnl|monDom2|scaffold_167 (339735-339945) | |
| 445-669, gnl|oryCun1|scaffold_141724 (7293-7500) | |
| 445-669, gnl|panTro1|chr13 (123117023-123117233) | |
| 445-669, gnl|rheMac2|chr12 (95675099-95675309) | |
| 445-669, gnl|rn3|chr9 (85555440-85555650) | |
| 445-669, gnl|tetNig1|chr8 (9186038-9186248) | |
| 445-669, gnl|xenTro1|scaffold_589 (266220-266430) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.195274) | |
| nep (0.183925) | |
| sto (0.179824) |