Ss1.1-Utr1-UTR010019B08.5
|
TTGGGGCGGCTGTGGGAGGCTGCCGCATTCTCGGGGACCGTCTTCGGTGATACGCAATTA
GCCATGGCAGAACCGCAGCTCGCGTCCAGCGGCCTCACCGACGAGGCTGCCCTCGCCTGC
TGCTCCGACCCGGACCCCAGCACCAAGGATTTTCTTTTTCAGCAGACCATGCTTCGAATT
AAGGATCCTAAGAAGTCATTGGATTTTTATACTAGAATTCTTGGAATGACGCTACTCCAA
AAATTAGATTTTCCCACTATGAAATTTTCACTCTATTTCTTGGCTTATGAGGATAAAAAT
GACATCCCAAAAGATAAAAGTGAAAAAGCAGCATGGGCATTCTCCAGAAAAGCTACGCTT
GAACTGACACACAATTGGGGCACTGAAGACGATGAGAGCCAGAGTTACCACAGTGGCAAT
TCAGATCCTCGGGGATTTGGTCACATTGGAATTGCTGTTCCTGATGTTCACGGTGCTTGT
AAAAGATTTGAAGAACTAGGAGTCAAATTTGTGAAGAAACCTGATGATGGTAAAATGAAA
GGCTTGGCATTTATTCAAGATCCTGATGGCTACTGGATCGAAATTTTGAATCCTAACAAT
ATGATAACTATTATTTAGTTCTATGAGAATACTGCTTTGAGATTTCAGTGGAGACATTGT
GGAAGGTAAAAAGGAAACAGTGTGATTCAAGATATTGAGATAACAGAAGCATTTAAGACT
AGATGGATCGTGGTCCCAATTCAAATTATTCTTAAGCCCATTTCCCTTTCCCATTTTAGC
TATGTTTTTCACCTAACTGTTCAGTCATTCTGGTTTTATAGCAGTGCTTTGTCTTATGTC
CTTGAATATAGTTGTATAACTTTACTTTTTAAGGCAATAATTAGAACAATTCCCTTCAGA
GGCTGCATTTGCTTTCTTTCTCCTAAAAAAGATACAAGTCTACAAATCTGCCTTTGAATC
ATCATTTTCAAAAAAAACCCATATAACATGTTTTTTCTCTGGTTACCTTCTGGGGTTTCA
GTTCCTCAGAAGTAACTTTTCACAATGGAAAGTAAAGAACACTGAGCAAAAATGAAATTT
CATGTATATTTCAAGTAGTATAAAGTTTATAAAGGAAATTACTCTTGGGAGAAATTCAGA
ATCATGCTGACAAGGATGCTGATAGAAAAACGAATTTCTTCTTTACAAAGTCCTCTCAAA
GTTTAAGGTCTAACCTCTTTATTTTGGGTGGGGAGGAGGATAGGAATATTATATACTAGG
AATGCAGAAGCTGGGCTAGGGTGTCACATACTTTATCTGCTTAATCCTTCCCAGTATCCT
GTGAGATAGAAAGCAGGCTAGGTATGCAAAATAACTTGATTGGATCCAAGGTAGTGTAAA
CAGACTCAAGTACTCAATGATTTCATCATCATTCTTAGTATTTAGATTGTACCTCAAATG
TTAGTGCCTCACCATACCTCTTCCATAGTCTTCTTTGTAAAAACCTTCAGTGAGTTTAAG
TGTTGTCGTCTCAGCTTTTGAGCCTGAGCACCATAGTGAGCGAAGAAGCAATGGAGGAAG
TCAGGAGCACACGAGTGCTCTGGGGATGCTCGGTTGTTCCTGTACAGGTAGTGCTTATGT
TGTGAAGAGCCCCTACCCCAAGGTCTTCCAGATCCCAGTAATCATTTAGGATCAGTTATG
TTCAGTGATAACATAACTGATTATCAAAAATCGGCTCAGTCGTCTTCCCTCCCATGAATG
ACATTTGATGGGTTTTAAAAACCAAACTGATTTTGAAAATCTCTTATGGCCCAAGTAATA
AGAACATCCAGTTTGTGGTTTAATTACATTTAGATTTTCCAGACTCCAGTGGAAGACCTT
TGGATAGGCCATGCCAATTGTGCTTACACTGATAGCACACAGCAGCACTTTGCATTTCCT
TTTTGGATGGAATGGATTTCTGTGAGCAATTCAAACAAATAGCAGTACTTATAAACTGAA
ATAAAATCAAACTTTAGGTAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTGGGGCGGCTGTGGGAGGCTGCCGCATTCTCGGGGACCGTCTTCGGTGATACGCAATTA
GCCATGGCAGAACCGCAGCTCGCGTCCAGCGGCCTCACCGACGAGGCTGCCCTCGCCTGC
TGCTCCGACCCGGACCCCAGCACCAAGGATTTTCTTTTTCAGCAGACCATGCTTCGAATT
AAGGATCCTAAGAAGTCATTGGATTTTTATACTAGAATTCTTGGAATGACGCTACTCCAA
AAATTAGATTTTCCCACTATGAAATTTTCACTCTATTTCTTGGCTTATGAGGATAAAAAT
GACATCCCAAAAGATAAAAGTGAAAAAGCAGCATGGGCATTCTCCAGAAAAGCTACGCTT
GAACTGACACACAATTGGGGCACTGAAGACGATGAGAGCCAGAGTTACCACAGTGGCAAT
TCAGATCCTCGGGGATTTGGTCACATTGGAATTGCTGTTCCTGATGTTCACGGTGCTTGT
AAAAGATTTGAAGAACTAGGAGTCAAATTTGTGAAGAAACCTGATGATGGTAAAATGAAA
GGCTTGGCATTTATTCAAGATCCTGATGGCTACTGGATCGAAATTTTGAATCCTAACAAT
ATGATAACTATTATTTAGTTCTATGAGAATACTGCTTTGAGATTTCAGTGGAGACATTGT
GGAAGGTAAAAAGGAAACAGTGTGATTCAAGATATTGAGATAACAGAAGCATTTAAGACT
AGATGGATCGTGGTCCCAATTCAAATTATTCTTAAGCCCATTTCCCTTTCCCATTTTAGC
TATGTTTTTCACCTAACTGTTCAGTCATTCTGGTTTTATAGCAGTGCTTTGTCTTATGTC
CTTGAATATAGTTGTATAACTTTACTTTTTAAGGCAATAATTAGAACAATTCCCTTCAGA
GGCTGCATTTGCTTTCTTTCTCCTAAAAAAGATACAAGTCTACAAATCTGCCTTTGAATC
ATCATTTTCAAAAAAAACCCATATAACATGTTTTTTCTCTGGTTACCTTCTGGGGTTTCA
GTTCCTCAGAAGTAACTTTTCACAATGGAAAGTAAAGAACACTGAGCAAAAATGAAATTT
CATGTATATTTCAAGTAGTATAAAGTTTATAAAGGAAATTACTCTTGGGAGAAATTCAGA
ATCATGCTGACAAGGATGCTGATAGAAAAACGAATTTCTTCTTTACAAAGTCCTCTCAAA
GTTTAAGGTCTAACCTCTTTATTTTGGGTGGGGAGGAGGATAGGAATATTATATACTAGG
AATGCAGAAGCTGGGCTAGGGTGTCACATACTTTATCTGCTTAATCCTTCCCAGTATCCT
GTGAGATAGAAAGCAGGCTAGGTATGCAAAATAACTTGATTGGATCCAAGGTAGTGTAAA
CAGACTCAAGTACTCAATGATTTCATCATCATTCTTAGTATTTAGATTGTACCTCAAATG
TTAGTGCCTCACCATACCTCTTCCATAGTCTTCTTTGTAAAAACCTTCAGTGAGTTTAAG
TGTTGTCGTCTCAGCTTTTGAGCCTGAGCACCATAGTGAGCGAAGAAGCAATGGAGGAAG
TCAGGAGCACACGAGTGCTCTGGGGATGCTCGGTTGTTCCTGTACAGGTAGTGCTTATGT
TGTGAAGAGCCCCTACCCCAAGGTCTTCCAGATCCCAGTAATCATTTAGGATCAGTTATG
TTCAGTGATAACATAACTGATTATCAAAAATCGGCTCAGTCGTCTTCCCTCCCATGAATG
ACATTTGATGGGTTTTAAAAACCAAACTGATTTTGAAAATCTCTTATGGCCCAAGTAATA
AGAACATCCAGTTTGTGGTTTAATTACATTTAGATTTTCCAGACTCCAGTGGAAGACCTT
TGGATAGGCCATGCCAATTGTGCTTACACTGATAGCACACAGCAGCACTTTGCATTTCCT
TTTTGGATGGAATGGATTTCTGTGAGCAATTCAAACAAATAGCAGTACTTATAAACTGAA
ATAAAATCAAACTTTAGGTAAAAAAAAAAAAAAAAA
|
|
gi|57094456|ref|XP_532129.1| |
Protein identifier
|
gi|57094456|ref|XP_532129.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
25-2015, gnl|bosTau2|chr7 (903996-902005) |
|
25-2015, gnl|Hg17|chr6 (38762730-38751697) |
| |
|
232-371, gnl|bosTau2|chr23 (11182540-11182401) |
|
232-371, gnl|canFam2|chr12 (10590561-10590700) |
|
232-371, gnl|danRer3|chrNA (90654238-90654377) |
|
232-371, gnl|dasNov1|scaffold_125084 (3425-3297) |
|
232-371, gnl|echTel1|scaffold_238830 (855-994) |
|
232-371, gnl|fr1|chrUn (224121566-224121427) |
|
232-371, gnl|galGal2|chr3 (25830645-25830506) |
|
232-371, gnl|hg17|chr6 (38760129-38760268) |
|
232-371, gnl|Hg17|chr6 (38760267-38760128) |
|
232-371, gnl|loxAfr1|scaffold_10390 (40620-40481) |
|
232-371, gnl|mm7|chr17 (28791416-28791555) |
|
232-371, gnl|Mm7|chr17 (28791554-28791415) |
|
232-371, gnl|monDom2|scaffold_42 (7004646-7004507) |
|
232-371, gnl|oryCun1|scaffold_200754 (3862-4001) |
|
232-371, gnl|panTro1|chr5 (39302669-39302808) |
|
232-371, gnl|rheMac2|chr4 (38499717-38499856) |
|
232-371, gnl|rn3|chr20 (8907324-8907463) |
|
232-371, gnl|tetNig1|chrUn_random (136413475-136413614) |
| |
|
529-2001, gnl|bosTau2|chr23 (11177347-11175891) |
|
529-2001, gnl|Hg17|chr6 (38753138-38751699) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
25-2015, gnl|bosTau2|chr7 (903996-902005) |
|
25-2015, gnl|Hg17|chr6 (38762730-38751697) |
| |
|
232-371, gnl|bosTau2|chr23 (11182540-11182401) |
|
232-371, gnl|canFam2|chr12 (10590561-10590700) |
|
232-371, gnl|danRer3|chrNA (90654238-90654377) |
|
232-371, gnl|dasNov1|scaffold_125084 (3425-3297) |
|
232-371, gnl|echTel1|scaffold_238830 (855-994) |
|
232-371, gnl|fr1|chrUn (224121566-224121427) |
|
232-371, gnl|galGal2|chr3 (25830645-25830506) |
|
232-371, gnl|hg17|chr6 (38760129-38760268) |
|
232-371, gnl|Hg17|chr6 (38760267-38760128) |
|
232-371, gnl|loxAfr1|scaffold_10390 (40620-40481) |
|
232-371, gnl|mm7|chr17 (28791416-28791555) |
|
232-371, gnl|Mm7|chr17 (28791554-28791415) |
|
232-371, gnl|monDom2|scaffold_42 (7004646-7004507) |
|
232-371, gnl|oryCun1|scaffold_200754 (3862-4001) |
|
232-371, gnl|panTro1|chr5 (39302669-39302808) |
|
232-371, gnl|rheMac2|chr4 (38499717-38499856) |
|
232-371, gnl|rn3|chr20 (8907324-8907463) |
|
232-371, gnl|tetNig1|chrUn_random (136413475-136413614) |
| |
|
529-2001, gnl|bosTau2|chr23 (11177347-11175891) |
|
529-2001, gnl|Hg17|chr6 (38753138-38751699) |
|
tbr (1.23343) |
|
sme (1.22175) |
|
ste (1.08167) |
|
kid (1.03788) |
|
hea (0.817996) |
|
fat (0.737137) |
|
cty (0.72856) |
|
ldo (0.679018) |
|
vin (0.665115) |
|
sag (0.548145) |
|
cki (0.495704) |
|
bfe (0.449573) |
|
lin (0.436808) |
|
spl (0.429553) |
|
csk (0.422238) |
|
ssp (0.406559) |
|
nlu (0.383362) |
|
ill (0.351185) |
|
sin (0.349895) |
|
cje (0.330469) |
|
fco (0.314416) |
|
hlv (0.278513) |
|
nca (0.273748) |
|
che (0.272628) |
|
bla (0.248694) |
|
eep (0.245128) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
ebs (0.236602) |
|
med (0.232504) |
|
mgm (0.180343) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
lun (0.150489) |
|
isp (0.150376) |
|
ski (0.146735) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
tra (0.123092) |
|
eru (0.120048) |
|
clu (0.119646) |
|
spc (0.113366) |
|
tbr (1.23343) |
|
sme (1.22175) |
|
ste (1.08167) |
|
kid (1.03788) |
|
hea (0.817996) |
|
fat (0.737137) |
|
cty (0.72856) |
|
ldo (0.679018) |
|
vin (0.665115) |
|
sag (0.548145) |
|
cki (0.495704) |
|
bfe (0.449573) |
|
lin (0.436808) |
|
spl (0.429553) |
|
csk (0.422238) |
|
ssp (0.406559) |
|
nlu (0.383362) |
|
ill (0.351185) |
|
sin (0.349895) |
|
cje (0.330469) |
|
fco (0.314416) |
|
hlv (0.278513) |
|
nca (0.273748) |
|
che (0.272628) |
|
bla (0.248694) |
|
eep (0.245128) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
ebs (0.236602) |
|
med (0.232504) |
|
mgm (0.180343) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
lun (0.150489) |
|
isp (0.150376) |
|
ski (0.146735) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
tra (0.123092) |
|
eru (0.120048) |
|
clu (0.119646) |
|
spc (0.113366) |
