Ss1.1-Utr1-UTR010019C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGAAGGTGCAGCGCTGGCGTTGGTGGGGCTGAAAGTTCTGGCCCAGGGATGCTGCAGC TGAGCCTGTCCTTTGGAAGTCAGGGGCCTGTGTCAGCCTCCCCGTGGCTGCTCCTGCAGC TGGTCGGTGCTACCTGGCTCCTGTGACAGAAGGTGCAGCGCTGGCGTTGGTGGGGCTGAA AGTTCTGGCCCAGGGATGCTGCAGCTGAGCCTGTCCTGGCTGGGACTGGGGCCTGTGTCA GCCTCCCCGTGGCTGCTCCTGCAGCTGGTCGGTGCTACCTGGCTCCTGTCCCGAATCCTG TCCTGGATCTATGACTTCTATGACAACTGCTGCCGCCTCCGGTGTTTCCCGCAACCCCCA AAACGGAACTGGTTTTGGGGTCACCAGGACCTGCCACCATCATACACAAGGATATGTTTT TGTACATCTTCCTGAAGCCCTGGCTGGGGGTTGGGCTCCTGCTGAGTGCTGGTGAGAAGT GGAGCCACCAGCGCCGCCTGCTGACACCTGCCTTCCACTTTGATATCTTGAAGTCATATG TGAAGATTTTCAACAGGAGTGCAGACATCATGCATGCCAAGTGGCAGCACTTGGCCTCAG AGGGCCACACCCGTCTGGACATGTTTGAACACATCAGCCTCATGACTCTGGACAGTCTGC AGAAATGTGTCTTCAGTTTTGACAGCAACTGCCAGGAGAAACCCAGTGAATACATTGCTG CAATCTCCGAGCTCAGTGCCCTGGTGACAAAACGGAATGAGCAGATCTTCCTGCACAAGG ACTTCCTGTACTACCTCACCCCCGAAGGGAGGCGCTTCCGCAAGGCCTGCCGCCTGGTGC ACGACTTCACAGATGCCGTCATCCAGGAGCGGCGTCGCACCCTCATTAGTCAGGGTTCCC AAGACTTCCTTAGGGCCAAGGCTAAGGCCAAGACTTTGGACTTCATTGATGTGCTCCTGC TGGCCAAGGATGAAGACGGGAAAGGACTGTCAGATGAGGACATCCGAGCCGAGGCTGACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGAAGGTGCAGCGCTGGCGTTGGTGGGGCTGAAAGTTCTGGCCCAGGGATGCTGCAGC TGAGCCTGTCCTTTGGAAGTCAGGGGCCTGTGTCAGCCTCCCCGTGGCTGCTCCTGCAGC TGGTCGGTGCTACCTGGCTCCTGTGACAGAAGGTGCAGCGCTGGCGTTGGTGGGGCTGAA AGTTCTGGCCCAGGGATGCTGCAGCTGAGCCTGTCCTGGCTGGGACTGGGGCCTGTGTCA GCCTCCCCGTGGCTGCTCCTGCAGCTGGTCGGTGCTACCTGGCTCCTGTCCCGAATCCTG TCCTGGATCTATGACTTCTATGACAACTGCTGCCGCCTCCGGTGTTTCCCGCAACCCCCA AAACGGAACTGGTTTTGGGGTCACCAGGACCTGCCACCATCATACACAAGGATATGTTTT TGTACATCTTCCTGAAGCCCTGGCTGGGGGTTGGGCTCCTGCTGAGTGCTGGTGAGAAGT GGAGCCACCAGCGCCGCCTGCTGACACCTGCCTTCCACTTTGATATCTTGAAGTCATATG TGAAGATTTTCAACAGGAGTGCAGACATCATGCATGCCAAGTGGCAGCACTTGGCCTCAG AGGGCCACACCCGTCTGGACATGTTTGAACACATCAGCCTCATGACTCTGGACAGTCTGC AGAAATGTGTCTTCAGTTTTGACAGCAACTGCCAGGAGAAACCCAGTGAATACATTGCTG CAATCTCCGAGCTCAGTGCCCTGGTGACAAAACGGAATGAGCAGATCTTCCTGCACAAGG ACTTCCTGTACTACCTCACCCCCGAAGGGAGGCGCTTCCGCAAGGCCTGCCGCCTGGTGC ACGACTTCACAGATGCCGTCATCCAGGAGCGGCGTCGCACCCTCATTAGTCAGGGTTCCC AAGACTTCCTTAGGGCCAAGGCTAAGGCCAAGACTTTGGACTTCATTGATGTGCTCCTGC TGGCCAAGGATGAAGACGGGAAAGGACTGTCAGATGAGGACATCCGAGCCGAGGCTGACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 184-301, + strand, RNAz p=0.897017 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 184-301, + strand, RNAz p=0.897017 |
| Aligned organism(s): 87 entry(ies) | More info |
| Aligned organism(s): 87 entry(ies) | Help | Less info |
| 184-393, gnl|bosTau2|chr7 (6741955-6741746) | |
| 184-393, gnl|canFam2|chr20 (49666316-49665780) | |
| 184-393, gnl|dasNov1|scaffold_102785 (4561-3971) | |
| 184-393, gnl|echTel1|scaffold_264234 (9242-9716) | |
| 184-393, gnl|hg17|chr19 (15535620-15536155) | |
| 184-393, gnl|Hg17|chr19 (15535871-15536081) | |
| 184-393, gnl|loxAfr1|scaffold_87764 (1353-1903) | |
| 184-393, gnl|mm7|chr17 (30705587-30706033) | |
| 184-393, gnl|Mm7|chr17 (30705775-30705985) | |
| 184-393, gnl|oryCun1|scaffold_83220 (804-1300) | |
| 184-393, gnl|panTro1|chr20 (16254333-16254868) | |
| 184-393, gnl|rheMac2|chr19 (15160615-15161144) | |
| 184-393, gnl|rn3|chr7 (13095366-13095825) | |
| 439-576, gnl|bosTau2|chr7 (6767726-6767587) | |
| 439-576, gnl|Hg17|chr19 (15509335-15509474) | |
| 439-576, gnl|Mm7|chr17 (30680740-30680879) | |
| 443-574, gnl|bosTau2|chr7 (6732836-6732705) | |
| 443-574, gnl|canFam2|chr20 (49659280-49659158) | |
| 443-574, gnl|danRer3|chr22 (5318663-5318782) | |
| 443-574, gnl|dasNov1|scaffold_32614 (12154-12032) | |
| 443-574, gnl|echTel1|scaffold_301001 (8449-8550) | |
| 443-574, gnl|hg17|chr19 (15545527-15545649) | |
| 443-574, gnl|Hg17|chr19 (15545544-15545675) | |
| 443-574, gnl|loxAfr1|scaffold_28807 (1002-1124) | |
| 443-574, gnl|mm7|chr17 (30719354-30719474) | |
| 443-574, gnl|Mm7|chr17 (30719369-30719500) | |
| 443-574, gnl|monDom2|scaffold_100 (1649456-1649329) | |
| 443-574, gnl|oryCun1|scaffold_86219 (995-887) | |
| 443-574, gnl|panTro1|chr20 (16578320-16578199) | |
| 443-574, gnl|rheMac2|chr19 (15171055-15171177) | |
| 443-574, gnl|rn3|chr7 (13103992-13104112) | |
| 698-969, gnl|bosTau2|chr7 (6727287-6727016) | |
| 698-969, gnl|canFam2|chr20 (49656500-49656755) | |
| 698-969, gnl|canFam2|chr20 (49656507-49656665) | |
| 698-969, gnl|canFam2|chr20 (49656500-49656755) | |
| 698-969, gnl|canFam2|chr20 (49624798-49624524) | |
| 698-969, gnl|canFam2|chr20 (49656782-49656507) | |
| 698-969, gnl|danRer3|chr22 (5354785-5355074) | |
| 698-969, gnl|dasNov1|scaffold_106102 (6625-6913) | |
| 698-969, gnl|dasNov1|scaffold_32614 (9314-9037) | |
| 698-969, gnl|dasNov1|scaffold_93572 (2341-2074) | |
| 698-969, gnl|dasNov1|scaffold_93572 (2334-2164) | |
| 698-969, gnl|dasNov1|scaffold_93572 (2341-2074) | |
| 698-969, gnl|echTel1|scaffold_217936 (5296-5564) | |
| 698-969, gnl|echTel1|scaffold_217936 (5303-5474) | |
| 698-969, gnl|echTel1|scaffold_217936 (5296-5564) | |
| 698-969, gnl|echTel1|scaffold_217936 (5571-5293) | |
| 698-969, gnl|echTel1|scaffold_217936 (5565-5303) | |
| 698-969, gnl|hg17|chr13 (18214560-18214823) | |
| 698-969, gnl|hg17|chr19 (15594914-15595191) | |
| 698-969, gnl|Hg17|chr19 (15594915-15595180) | |
| 698-969, gnl|hg17|chr2 (94847609-94847777) | |
| 698-969, gnl|hg17|chr21 (14141641-14141905) | |
| 698-969, gnl|hg17|chr9 (33593261-33593544) | |
| 698-969, gnl|loxAfr1|scaffold_26181 (36065-35788) | |
| 698-969, gnl|loxAfr1|scaffold_39215 (6500-6233) | |
| 698-969, gnl|loxAfr1|scaffold_39215 (6493-6323) | |
| 698-969, gnl|loxAfr1|scaffold_39215 (6500-6233) | |
| 698-969, gnl|loxAfr1|scaffold_39215 (6205-6493) | |
| 698-969, gnl|mm7|chr17 (31110892-31111159) | |
| 698-969, gnl|mm7|chr17 (31110899-31111069) | |
| 698-969, gnl|mm7|chr17 (31110892-31111159) | |
| 698-969, gnl|mm7|chr17 (30743299-30743576) | |
| 698-969, gnl|mm7|chr17 (30722852-30723139) | |
| 698-969, gnl|Mm7|chr17 (30722873-30723144) | |
| 698-969, gnl|monDom2|scaffold_100 (1492316-1492593) | |
| 698-969, gnl|monDom2|scaffold_140 (444053-444180) | |
| 698-969, gnl|oryCun1|scaffold_96644 (4007-3740) | |
| 698-969, gnl|oryCun1|scaffold_96644 (4000-3830) | |
| 698-969, gnl|oryCun1|scaffold_96644 (4007-3740) | |
| 698-969, gnl|oryCun1|scaffold_96644 (3733-4010) | |
| 698-969, gnl|oryCun1|scaffold_96644 (3712-4000) | |
| 698-969, gnl|panTro1|chr11 (39258950-39258667) | |
| 698-969, gnl|panTro1|chr12_random (34170081-34170249) | |
| 698-969, gnl|panTro1|chr20 (16300024-16300301) | |
| 698-969, gnl|panTro1|chr22 (14129698-14129962) | |
| 698-969, gnl|panTro1|chr22 (14129698-14129962) | |
| 698-969, gnl|rheMac2|chr15 (108716538-108716802) | |
| 698-969, gnl|rheMac2|chr15 (106208899-106209067) | |
| 698-969, gnl|rheMac2|chr15 (108716538-108716802) | |
| 698-969, gnl|rheMac2|chr15 (108716830-108716545) | |
| 698-969, gnl|rheMac2|chr19 (15218056-15218333) | |
| 698-969, gnl|rn3|chr7 (13616111-13616378) | |
| 698-969, gnl|rn3|chr7 (13616118-13616288) | |
| 698-969, gnl|rn3|chr7 (13616111-13616378) | |
| 698-969, gnl|rn3|chr7 (13128133-13128416) | |
| 698-969, gnl|rn3|chr7 (13616405-13616118) |
| Aligned organism(s): 87 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 184-393, gnl|bosTau2|chr7 (6741955-6741746) | |
| 184-393, gnl|canFam2|chr20 (49666316-49665780) | |
| 184-393, gnl|dasNov1|scaffold_102785 (4561-3971) | |
| 184-393, gnl|echTel1|scaffold_264234 (9242-9716) | |
| 184-393, gnl|hg17|chr19 (15535620-15536155) | |
| 184-393, gnl|Hg17|chr19 (15535871-15536081) | |
| 184-393, gnl|loxAfr1|scaffold_87764 (1353-1903) | |
| 184-393, gnl|mm7|chr17 (30705587-30706033) | |
| 184-393, gnl|Mm7|chr17 (30705775-30705985) | |
| 184-393, gnl|oryCun1|scaffold_83220 (804-1300) | |
| 184-393, gnl|panTro1|chr20 (16254333-16254868) | |
| 184-393, gnl|rheMac2|chr19 (15160615-15161144) | |
| 184-393, gnl|rn3|chr7 (13095366-13095825) | |
| 439-576, gnl|bosTau2|chr7 (6767726-6767587) | |
| 439-576, gnl|Hg17|chr19 (15509335-15509474) | |
| 439-576, gnl|Mm7|chr17 (30680740-30680879) | |
| 443-574, gnl|bosTau2|chr7 (6732836-6732705) | |
| 443-574, gnl|canFam2|chr20 (49659280-49659158) | |
| 443-574, gnl|danRer3|chr22 (5318663-5318782) | |
| 443-574, gnl|dasNov1|scaffold_32614 (12154-12032) | |
| 443-574, gnl|echTel1|scaffold_301001 (8449-8550) | |
| 443-574, gnl|hg17|chr19 (15545527-15545649) | |
| 443-574, gnl|Hg17|chr19 (15545544-15545675) | |
| 443-574, gnl|loxAfr1|scaffold_28807 (1002-1124) | |
| 443-574, gnl|mm7|chr17 (30719354-30719474) | |
| 443-574, gnl|Mm7|chr17 (30719369-30719500) | |
| 443-574, gnl|monDom2|scaffold_100 (1649456-1649329) | |
| 443-574, gnl|oryCun1|scaffold_86219 (995-887) | |
| 443-574, gnl|panTro1|chr20 (16578320-16578199) | |
| 443-574, gnl|rheMac2|chr19 (15171055-15171177) | |
| 443-574, gnl|rn3|chr7 (13103992-13104112) | |
| 698-969, gnl|bosTau2|chr7 (6727287-6727016) | |
| 698-969, gnl|canFam2|chr20 (49656500-49656755) | |
| 698-969, gnl|canFam2|chr20 (49656507-49656665) | |
| 698-969, gnl|canFam2|chr20 (49656500-49656755) | |
| 698-969, gnl|canFam2|chr20 (49624798-49624524) | |
| 698-969, gnl|canFam2|chr20 (49656782-49656507) | |
| 698-969, gnl|danRer3|chr22 (5354785-5355074) | |
| 698-969, gnl|dasNov1|scaffold_106102 (6625-6913) | |
| 698-969, gnl|dasNov1|scaffold_32614 (9314-9037) | |
| 698-969, gnl|dasNov1|scaffold_93572 (2341-2074) | |
| 698-969, gnl|dasNov1|scaffold_93572 (2334-2164) | |
| 698-969, gnl|dasNov1|scaffold_93572 (2341-2074) | |
| 698-969, gnl|echTel1|scaffold_217936 (5296-5564) | |
| 698-969, gnl|echTel1|scaffold_217936 (5303-5474) | |
| 698-969, gnl|echTel1|scaffold_217936 (5296-5564) | |
| 698-969, gnl|echTel1|scaffold_217936 (5571-5293) | |
| 698-969, gnl|echTel1|scaffold_217936 (5565-5303) | |
| 698-969, gnl|hg17|chr13 (18214560-18214823) | |
| 698-969, gnl|hg17|chr19 (15594914-15595191) | |
| 698-969, gnl|Hg17|chr19 (15594915-15595180) | |
| 698-969, gnl|hg17|chr2 (94847609-94847777) | |
| 698-969, gnl|hg17|chr21 (14141641-14141905) | |
| 698-969, gnl|hg17|chr9 (33593261-33593544) | |
| 698-969, gnl|loxAfr1|scaffold_26181 (36065-35788) | |
| 698-969, gnl|loxAfr1|scaffold_39215 (6500-6233) | |
| 698-969, gnl|loxAfr1|scaffold_39215 (6493-6323) | |
| 698-969, gnl|loxAfr1|scaffold_39215 (6500-6233) | |
| 698-969, gnl|loxAfr1|scaffold_39215 (6205-6493) | |
| 698-969, gnl|mm7|chr17 (31110892-31111159) | |
| 698-969, gnl|mm7|chr17 (31110899-31111069) | |
| 698-969, gnl|mm7|chr17 (31110892-31111159) | |
| 698-969, gnl|mm7|chr17 (30743299-30743576) | |
| 698-969, gnl|mm7|chr17 (30722852-30723139) | |
| 698-969, gnl|Mm7|chr17 (30722873-30723144) | |
| 698-969, gnl|monDom2|scaffold_100 (1492316-1492593) | |
| 698-969, gnl|monDom2|scaffold_140 (444053-444180) | |
| 698-969, gnl|oryCun1|scaffold_96644 (4007-3740) | |
| 698-969, gnl|oryCun1|scaffold_96644 (4000-3830) | |
| 698-969, gnl|oryCun1|scaffold_96644 (4007-3740) | |
| 698-969, gnl|oryCun1|scaffold_96644 (3733-4010) | |
| 698-969, gnl|oryCun1|scaffold_96644 (3712-4000) | |
| 698-969, gnl|panTro1|chr11 (39258950-39258667) | |
| 698-969, gnl|panTro1|chr12_random (34170081-34170249) | |
| 698-969, gnl|panTro1|chr20 (16300024-16300301) | |
| 698-969, gnl|panTro1|chr22 (14129698-14129962) | |
| 698-969, gnl|panTro1|chr22 (14129698-14129962) | |
| 698-969, gnl|rheMac2|chr15 (108716538-108716802) | |
| 698-969, gnl|rheMac2|chr15 (106208899-106209067) | |
| 698-969, gnl|rheMac2|chr15 (108716538-108716802) | |
| 698-969, gnl|rheMac2|chr15 (108716830-108716545) | |
| 698-969, gnl|rheMac2|chr19 (15218056-15218333) | |
| 698-969, gnl|rn3|chr7 (13616111-13616378) | |
| 698-969, gnl|rn3|chr7 (13616118-13616288) | |
| 698-969, gnl|rn3|chr7 (13616111-13616378) | |
| 698-969, gnl|rn3|chr7 (13128133-13128416) | |
| 698-969, gnl|rn3|chr7 (13616405-13616118) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| nco (0.161734) |