Ss1.1-Utr1-UTR010019H08.5.5
|
TGGAGTTTCGTGGAGGCCGGGAGTTTGCCTGCGTTTCTTCTGTGACCGCTGTTGCCACTG
CCACCTGACAATGCAGATCTTTGTAAAGACCTTGACTGGTAAGACCATCACCCTGGAAGT
GGAGCCCAGTGACACCATTGAGAATGTCAAGGGGAAGATTCAAGAAAAAGAGGGCATCCC
CCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTC
TGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGGGAT
GCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGCGA
CACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGCA
GAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACAT
CCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGT
GAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGCGACACCATCGAGAA
CGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTT
TGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTC
CACCCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGAC
TGGTAAGACCATCACCCTGGAAGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCGAA
GATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCA
GCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCT
GGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCAT
CACCCTGGAAGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAA
GGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGG
GCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCT
CAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGT
GGAGCCCAGCGACACCATCGAGAATGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCC
CCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTC
TGACTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGGTTT
CTAAGTTCTCCCTTTTAAGCTTTCAACAAATTTCATTGCACTTTTCTTTCAATAAAGTTG
TTGCATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGAGTTTCGTGGAGGCCGGGAGTTTGCCTGCGTTTCTTCTGTGACCGCTGTTGCCACTG
CCACCTGACAATGCAGATCTTTGTAAAGACCTTGACTGGTAAGACCATCACCCTGGAAGT
GGAGCCCAGTGACACCATTGAGAATGTCAAGGGGAAGATTCAAGAAAAAGAGGGCATCCC
CCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTC
TGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGGGAT
GCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGCGA
CACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGCA
GAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACAT
CCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGT
GAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGCGACACCATCGAGAA
CGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTT
TGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTC
CACCCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGAC
TGGTAAGACCATCACCCTGGAAGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCGAA
GATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCA
GCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCT
GGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCAT
CACCCTGGAAGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAA
GGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGG
GCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCT
CAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGT
GGAGCCCAGCGACACCATCGAGAATGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCC
CCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTC
TGACTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGGTTT
CTAAGTTCTCCCTTTTAAGCTTTCAACAAATTTCATTGCACTTTTCTTTCAATAAAGTTG
TTGCATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|62204948|gb|AAH93445.1| |
Protein identifier
|
gi|62204948|gb|AAH93445.1| |
|
71-1420, - strand, RNAz p=0.996535 |
|
141-701, - strand, RNAz p=0.991103 |
|
298-1385, - strand, RNAz p=0.993151 |
|
754-929, - strand, RNAz p=0.992093 |
|
821-940, - strand, RNAz p=0.677457 |
|
982-1157, - strand, RNAz p=0.992093 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
71-1420, - strand, RNAz p=0.996535 |
|
141-701, - strand, RNAz p=0.991103 |
|
298-1385, - strand, RNAz p=0.993151 |
|
754-929, - strand, RNAz p=0.992093 |
|
821-940, - strand, RNAz p=0.677457 |
|
982-1157, - strand, RNAz p=0.992093 |
|
61-1434, gnl|bosTau2|chr17 (26093198-26091825) |
| |
|
71-245, gnl|bosTau2|chr11 (21613178-21613352) |
|
71-245, gnl|Hg17|chr1 (189416970-189417144) |
|
71-245, gnl|Mm7|chr9 (83507906-83508066) |
| |
|
298-473, gnl|bosTau2|chr11 (21613177-21613352) |
|
298-473, gnl|Hg17|chr1 (189416969-189417144) |
|
298-473, gnl|Mm7|chr9 (83507905-83508066) |
| |
|
526-701, gnl|bosTau2|chr11 (21613177-21613352) |
|
526-701, gnl|Hg17|chr1 (189416969-189417144) |
|
526-701, gnl|Mm7|chr9 (83507905-83508066) |
| |
|
754-929, gnl|bosTau2|chr11 (21613177-21613352) |
|
754-929, gnl|Hg17|chr1 (189416969-189417144) |
|
754-929, gnl|Mm7|chr9 (83507905-83508066) |
| |
|
982-1157, gnl|bosTau2|chr11 (21613177-21613352) |
|
982-1157, gnl|Hg17|chr1 (189416969-189417144) |
|
982-1157, gnl|Mm7|chr9 (83507905-83508066) |
| |
|
1210-1385, gnl|bosTau2|chr11 (21613177-21613352) |
|
1210-1385, gnl|Hg17|chr1 (189416969-189417144) |
|
1210-1385, gnl|Mm7|chr9 (83507905-83508066) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
61-1434, gnl|bosTau2|chr17 (26093198-26091825) |
| |
|
71-245, gnl|bosTau2|chr11 (21613178-21613352) |
|
71-245, gnl|Hg17|chr1 (189416970-189417144) |
|
71-245, gnl|Mm7|chr9 (83507906-83508066) |
| |
|
298-473, gnl|bosTau2|chr11 (21613177-21613352) |
|
298-473, gnl|Hg17|chr1 (189416969-189417144) |
|
298-473, gnl|Mm7|chr9 (83507905-83508066) |
| |
|
526-701, gnl|bosTau2|chr11 (21613177-21613352) |
|
526-701, gnl|Hg17|chr1 (189416969-189417144) |
|
526-701, gnl|Mm7|chr9 (83507905-83508066) |
| |
|
754-929, gnl|bosTau2|chr11 (21613177-21613352) |
|
754-929, gnl|Hg17|chr1 (189416969-189417144) |
|
754-929, gnl|Mm7|chr9 (83507905-83508066) |
| |
|
982-1157, gnl|bosTau2|chr11 (21613177-21613352) |
|
982-1157, gnl|Hg17|chr1 (189416969-189417144) |
|
982-1157, gnl|Mm7|chr9 (83507905-83508066) |
| |
|
1210-1385, gnl|bosTau2|chr11 (21613177-21613352) |
|
1210-1385, gnl|Hg17|chr1 (189416969-189417144) |
|
1210-1385, gnl|Mm7|chr9 (83507905-83508066) |
|
cov (1.45368) |
|
hyp (1.42837) |
|
ill (1.40474) |
|
ebs (1.30131) |
|
cly (1.08578) |
|
nms (1.06929) |
|
lnt (0.996158) |
|
nje (0.99552) |
|
ece (0.917221) |
|
eye (0.852515) |
|
cga (0.837287) |
|
nco (0.808669) |
|
ute (0.796707) |
|
jej (0.791374) |
|
cag (0.755972) |
|
eru (0.720288) |
|
ton (0.702001) |
|
nbm (0.695272) |
|
ecc (0.690211) |
|
jca (0.683761) |
|
fhi (0.678311) |
|
nlu (0.575043) |
|
hlv (0.557025) |
|
nmm (0.531209) |
|
fty (0.527519) |
|
cty (0.5204) |
|
duo (0.518403) |
|
eep (0.490256) |
|
mas (0.42061) |
|
amn (0.417711) |
|
tes (0.415628) |
|
hea (0.408998) |
|
ste (0.405625) |
|
eje (0.395335) |
|
col (0.390016) |
|
ldo (0.38801) |
|
elu (0.385356) |
|
cbl (0.344392) |
|
mcp (0.341297) |
|
cli (0.305623) |
|
sme (0.305437) |
|
fce (0.271592) |
|
lyg (0.266205) |
|
ese (0.253004) |
|
bla (0.248694) |
|
mgp (0.230681) |
|
aor (0.195274) |
|
nep (0.183925) |
|
sto (0.179824) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
cje (0.165235) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
lun (0.150489) |
|
pty (0.142714) |
|
cst (0.140036) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
kid (0.129735) |
|
cbr (0.127975) |
|
pgl (0.118483) |
|
med (0.116252) |
|
cov (1.45368) |
|
hyp (1.42837) |
|
ill (1.40474) |
|
ebs (1.30131) |
|
cly (1.08578) |
|
nms (1.06929) |
|
lnt (0.996158) |
|
nje (0.99552) |
|
ece (0.917221) |
|
eye (0.852515) |
|
cga (0.837287) |
|
nco (0.808669) |
|
ute (0.796707) |
|
jej (0.791374) |
|
cag (0.755972) |
|
eru (0.720288) |
|
ton (0.702001) |
|
nbm (0.695272) |
|
ecc (0.690211) |
|
jca (0.683761) |
|
fhi (0.678311) |
|
nlu (0.575043) |
|
hlv (0.557025) |
|
nmm (0.531209) |
|
fty (0.527519) |
|
cty (0.5204) |
|
duo (0.518403) |
|
eep (0.490256) |
|
mas (0.42061) |
|
amn (0.417711) |
|
tes (0.415628) |
|
hea (0.408998) |
|
ste (0.405625) |
|
eje (0.395335) |
|
col (0.390016) |
|
ldo (0.38801) |
|
elu (0.385356) |
|
cbl (0.344392) |
|
mcp (0.341297) |
|
cli (0.305623) |
|
sme (0.305437) |
|
fce (0.271592) |
|
lyg (0.266205) |
|
ese (0.253004) |
|
bla (0.248694) |
|
mgp (0.230681) |
|
aor (0.195274) |
|
nep (0.183925) |
|
sto (0.179824) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
cje (0.165235) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
lun (0.150489) |
|
pty (0.142714) |
|
cst (0.140036) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
kid (0.129735) |
|
cbr (0.127975) |
|
pgl (0.118483) |
|
med (0.116252) |
