Ss1.1-Utr1-UTR010020A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTCTGAGCCTAAGACCTCAAAAGACCCCGAATTCCACCGAGAGTCCCCAGGCGGGTGC TGAGAGGCAAGCGCGGGTTCGAGATCGGAAGAGAGCGAGGGCAGCGCCATGGCCAGCAAG GGTCGCGAGGGCGAGCACCCATCCGTGACGCTCTTCCGTCAGTACCTGCGCATCCGCACC GTCCAGCCTGAGCCCGACTACGGGGCTGCTGTGGCCTTCCTTGAGGAGAGAGCCCGCCAG CTGGGCCTGGGCTGTCAGAAAGTGGAGGTGGTACCTGGCCATGTGGTGACCGTGCTGACC TGGCCGGGCACCAACCCCACACTCTCCTCCATCTTGCTCAACTCCCACACAGATGTGGTG CCTGTCTTCAAGGAGCATTGGAGTCATGACCCCTTTGAGGGCTTCAAGGATGCAGATGGC TACATCTATGGCAGGGGCGCCCAGGACATGAAGTGCGTCAGCATCCAGTACCTGGAGGCT GTGAGGAGGCTGAAGGTTGAGGGCCACCATTTCCCCAGAACCATCCACATGACCTTTGTG CCAGATGAGGAGGTTGGAGGTCACCAAGGCATGGAGCTCTTTGTGAAGCGGCCCGAGTTC CAGGCCCTGAGGGCTGGCTTTGCCCTGGATGAAGGCCTAGCCAGCCCCACTGACGCCTTC ACTGTCTTTTACAGTGAGCGGAGCCCCTGGTGGCTAAGGGTCACGAGCACTGGGAAGCCA GGGCATGGCTCGCGCTTCATTGAGGACACAGCAGCAGAGAAGCTGCACAAGGTCATCAAC TCTATCCTGGCTTTTCGGGAGAAGGAGAAGCAGAGGCTGCAGTCAAACCAGCTGAAGCCG GGGGCTGTGACCTCCGTGAACCTGACTATGCTAGAGGGTGGCGTGGCCTATAACGTCGTT CCTGCCACCATGAGTGCCTGCTTTGACTTCCGCGTAGCACCGGATGTGGACCTGAAGGCT TTCGAGGAGCAGCTGCAGAGTTGGTGCCAGGCAGCTGGCGAGGGGGTCACCTTTGAGTTT GTTCAGAAGTGGATGGAGACACAAGTGACATCTACTGATGACTCAGACCCCTGGTGGGCA GCATTTAGTGGGGTCTTCAAGGATATGAAGCTTGCCCTAGAGCTAGAGATCTGCCCTGCT TCCACTGACGCCCGCTATATTCGTGCGGCGGGGGTTCCGGCTCTGGGCTTCTCACCCATG AACCACACACCGGTGCTGCTCCATGACCATGATGAGCGGCTGCATGAGGCCGTGTTTCTC CGTGGGGTTGACATATACACTCAGCTGCTGTCTGCCTTGGCCAGCGTGCCCGCACTGCCC AGTGAAAGCTGAGCTCCAGCGCTTTCCAGTGCTAAGGACCCCTCTTCCCTCCTGCCCAAC AATAAAGTCTGTGTGGACAGGGCCCACTTCTGAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTCTGAGCCTAAGACCTCAAAAGACCCCGAATTCCACCGAGAGTCCCCAGGCGGGTGC TGAGAGGCAAGCGCGGGTTCGAGATCGGAAGAGAGCGAGGGCAGCGCCATGGCCAGCAAG GGTCGCGAGGGCGAGCACCCATCCGTGACGCTCTTCCGTCAGTACCTGCGCATCCGCACC GTCCAGCCTGAGCCCGACTACGGGGCTGCTGTGGCCTTCCTTGAGGAGAGAGCCCGCCAG CTGGGCCTGGGCTGTCAGAAAGTGGAGGTGGTACCTGGCCATGTGGTGACCGTGCTGACC TGGCCGGGCACCAACCCCACACTCTCCTCCATCTTGCTCAACTCCCACACAGATGTGGTG CCTGTCTTCAAGGAGCATTGGAGTCATGACCCCTTTGAGGGCTTCAAGGATGCAGATGGC TACATCTATGGCAGGGGCGCCCAGGACATGAAGTGCGTCAGCATCCAGTACCTGGAGGCT GTGAGGAGGCTGAAGGTTGAGGGCCACCATTTCCCCAGAACCATCCACATGACCTTTGTG CCAGATGAGGAGGTTGGAGGTCACCAAGGCATGGAGCTCTTTGTGAAGCGGCCCGAGTTC CAGGCCCTGAGGGCTGGCTTTGCCCTGGATGAAGGCCTAGCCAGCCCCACTGACGCCTTC ACTGTCTTTTACAGTGAGCGGAGCCCCTGGTGGCTAAGGGTCACGAGCACTGGGAAGCCA GGGCATGGCTCGCGCTTCATTGAGGACACAGCAGCAGAGAAGCTGCACAAGGTCATCAAC TCTATCCTGGCTTTTCGGGAGAAGGAGAAGCAGAGGCTGCAGTCAAACCAGCTGAAGCCG GGGGCTGTGACCTCCGTGAACCTGACTATGCTAGAGGGTGGCGTGGCCTATAACGTCGTT CCTGCCACCATGAGTGCCTGCTTTGACTTCCGCGTAGCACCGGATGTGGACCTGAAGGCT TTCGAGGAGCAGCTGCAGAGTTGGTGCCAGGCAGCTGGCGAGGGGGTCACCTTTGAGTTT GTTCAGAAGTGGATGGAGACACAAGTGACATCTACTGATGACTCAGACCCCTGGTGGGCA GCATTTAGTGGGGTCTTCAAGGATATGAAGCTTGCCCTAGAGCTAGAGATCTGCCCTGCT TCCACTGACGCCCGCTATATTCGTGCGGCGGGGGTTCCGGCTCTGGGCTTCTCACCCATG AACCACACACCGGTGCTGCTCCATGACCATGATGAGCGGCTGCATGAGGCCGTGTTTCTC CGTGGGGTTGACATATACACTCAGCTGCTGTCTGCCTTGGCCAGCGTGCCCGCACTGCCC AGTGAAAGCTGAGCTCCAGCGCTTTCCAGTGCTAAGGACCCCTCTTCCCTCCTGCCCAAC AATAAAGTCTGTGTGGACAGGGCCCACTTCTGAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 266-381, - strand, RNAz p=0.528186 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 266-381, - strand, RNAz p=0.528186 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 98-203, gnl|bosTau2|chr22 (36491415-36491520) | |
| 98-203, gnl|Hg17|chr3 (51993113-51993215) | |
| 98-203, gnl|Mm7|chr9 (106167178-106167076) | |
| 266-381, gnl|bosTau2|chr22 (36492492-36492607) | |
| 266-381, gnl|canFam2|chr20 (40731126-40731000) | |
| 266-381, gnl|danRer3|chrNA (139764174-139764044) | |
| 266-381, gnl|dasNov1|scaffold_4370 (21423-21327) | |
| 266-381, gnl|fr1|chrUn (126574735-126574868) | |
| 266-381, gnl|hg17|chr3 (51994395-51994528) | |
| 266-381, gnl|Hg17|chr3 (51994415-51994530) | |
| 266-381, gnl|mm7|chr9 (106166270-106166139) | |
| 266-381, gnl|Mm7|chr9 (106166250-106166134) | |
| 266-381, gnl|monDom2|scaffold_5 (71719714-71719564) | |
| 266-381, gnl|panTro1|chr2 (53604273-53604406) | |
| 266-381, gnl|rn3|chr8 (111600176-111600045) | |
| 266-381, gnl|tetNig1|chr11 (5375986-5375857) | |
| 811-958, gnl|bosTau2|chr22 (36494285-36494435) | |
| 811-958, gnl|canFam2|chr20 (40729092-40729237) | |
| 811-958, gnl|dasNov1|scaffold_4370 (20763-20909) | |
| 811-958, gnl|hg17|chr18 (64811281-64811429) | |
| 811-958, gnl|Hg17|chr3 (51996360-51996510) | |
| 811-958, gnl|loxAfr1|scaffold_531 (78840-78987) | |
| 811-958, gnl|mm7|chr9 (106164136-106164280) | |
| 811-958, gnl|Mm7|chr9 (106164291-106164132) | |
| 811-958, gnl|panTro1|chr17 (61787387-61787535) | |
| 811-958, gnl|rheMac2|chr18 (62581950-62582104) | |
| 811-958, gnl|rn3|chr8 (111598034-111598178) | |
| 1171-1416, gnl|bosTau2|chr22 (36495493-36495753) | |
| 1171-1416, gnl|canFam2|chr20 (40728146-40727974) | |
| 1171-1416, gnl|danRer3|chrNA (139756499-139756345) | |
| 1171-1416, gnl|dasNov1|scaffold_23067 (711-883) | |
| 1171-1416, gnl|echTel1|scaffold_150519 (498-671) | |
| 1171-1416, gnl|fr1|chrUn (126578596-126578767) | |
| 1171-1416, gnl|hg17|chr3 (51997963-51998135) | |
| 1171-1416, gnl|Hg17|chr3 (51997970-51998243) | |
| 1171-1416, gnl|loxAfr1|scaffold_531 (77666-77494) | |
| 1171-1416, gnl|mm7|chr9 (106162699-106162527) | |
| 1171-1416, gnl|Mm7|chr9 (106162690-106162434) | |
| 1171-1416, gnl|monDom2|scaffold_5 (71713176-71713004) | |
| 1171-1416, gnl|panTro1|chr2 (53607841-53608013) | |
| 1171-1416, gnl|rheMac2|chr2 (84407370-84407198) | |
| 1171-1416, gnl|rn3|chr8 (111596612-111596440) | |
| 1171-1416, gnl|tetNig1|chr11 (5373127-5372965) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-203, gnl|bosTau2|chr22 (36491415-36491520) | |
| 98-203, gnl|Hg17|chr3 (51993113-51993215) | |
| 98-203, gnl|Mm7|chr9 (106167178-106167076) | |
| 266-381, gnl|bosTau2|chr22 (36492492-36492607) | |
| 266-381, gnl|canFam2|chr20 (40731126-40731000) | |
| 266-381, gnl|danRer3|chrNA (139764174-139764044) | |
| 266-381, gnl|dasNov1|scaffold_4370 (21423-21327) | |
| 266-381, gnl|fr1|chrUn (126574735-126574868) | |
| 266-381, gnl|hg17|chr3 (51994395-51994528) | |
| 266-381, gnl|Hg17|chr3 (51994415-51994530) | |
| 266-381, gnl|mm7|chr9 (106166270-106166139) | |
| 266-381, gnl|Mm7|chr9 (106166250-106166134) | |
| 266-381, gnl|monDom2|scaffold_5 (71719714-71719564) | |
| 266-381, gnl|panTro1|chr2 (53604273-53604406) | |
| 266-381, gnl|rn3|chr8 (111600176-111600045) | |
| 266-381, gnl|tetNig1|chr11 (5375986-5375857) | |
| 811-958, gnl|bosTau2|chr22 (36494285-36494435) | |
| 811-958, gnl|canFam2|chr20 (40729092-40729237) | |
| 811-958, gnl|dasNov1|scaffold_4370 (20763-20909) | |
| 811-958, gnl|hg17|chr18 (64811281-64811429) | |
| 811-958, gnl|Hg17|chr3 (51996360-51996510) | |
| 811-958, gnl|loxAfr1|scaffold_531 (78840-78987) | |
| 811-958, gnl|mm7|chr9 (106164136-106164280) | |
| 811-958, gnl|Mm7|chr9 (106164291-106164132) | |
| 811-958, gnl|panTro1|chr17 (61787387-61787535) | |
| 811-958, gnl|rheMac2|chr18 (62581950-62582104) | |
| 811-958, gnl|rn3|chr8 (111598034-111598178) | |
| 1171-1416, gnl|bosTau2|chr22 (36495493-36495753) | |
| 1171-1416, gnl|canFam2|chr20 (40728146-40727974) | |
| 1171-1416, gnl|danRer3|chrNA (139756499-139756345) | |
| 1171-1416, gnl|dasNov1|scaffold_23067 (711-883) | |
| 1171-1416, gnl|echTel1|scaffold_150519 (498-671) | |
| 1171-1416, gnl|fr1|chrUn (126578596-126578767) | |
| 1171-1416, gnl|hg17|chr3 (51997963-51998135) | |
| 1171-1416, gnl|Hg17|chr3 (51997970-51998243) | |
| 1171-1416, gnl|loxAfr1|scaffold_531 (77666-77494) | |
| 1171-1416, gnl|mm7|chr9 (106162699-106162527) | |
| 1171-1416, gnl|Mm7|chr9 (106162690-106162434) | |
| 1171-1416, gnl|monDom2|scaffold_5 (71713176-71713004) | |
| 1171-1416, gnl|panTro1|chr2 (53607841-53608013) | |
| 1171-1416, gnl|rheMac2|chr2 (84407370-84407198) | |
| 1171-1416, gnl|rn3|chr8 (111596612-111596440) | |
| 1171-1416, gnl|tetNig1|chr11 (5373127-5372965) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| hlv (0.417769) | |
| cki (0.330469) | |
| sme (0.305437) | |
| eli (0.303628) | |
| cag (0.302389) | |
| cga (0.279096) | |
| nca (0.273748) | |
| cov (0.264306) | |
| nms (0.213858) | |
| mas (0.210305) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| nco (0.161734) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.417769) | |
| cki (0.330469) | |
| sme (0.305437) | |
| eli (0.303628) | |
| cag (0.302389) | |
| cga (0.279096) | |
| nca (0.273748) | |
| cov (0.264306) | |
| nms (0.213858) | |
| mas (0.210305) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| nco (0.161734) | |
| nbm (0.0993246) | |
| jej (0.0989218) |