Non-Coding RNA Search

Ss1.1-Utr1-UTR010020D12.5

Sequence:


               
               AAGTTGCCGTGGCGTCCAACGCTAAGGTCTCGAAAGGTTCAGCCGCTGTCTAGCCGCTGG
CCGGAGCCAGGGTCCACTGACCACGCTGGCTGCACATGGAACCGAGGACTCGCGCGGAGG
CAGGATGCTCCCGGCCAGCGAGATCGGCGAAGCGCCAGCAACCCCGTGCTGTTCTGAAAA
TGGTGACCAAAGGAAGGATGTCAAGGACAAAAGTGAAATAAATATTACAGCTCTCACTGG
AAATGAACAAGTCTGTGAAGGCACTGATAATGGTGATCTCCCTTCCTATGTGTCAGCATT
TATAGAAAAGGAAGTTGGAAATGACCTTAAATCTTTAAAGAAACTTGATAAACTCATAGA
ACAGATGACAGAAAGTAAAATGCAATTAGAAGAACAGGTACTTACAGTTTCATCAGAAAT
CCCTAAAAGAATTCAGAGTGCCTTAAAAAATGCCGACGAATCAAAGCAGTTCCTTACTCA
GTTTCTGGAGCAAGAAACCCATCTCTTTAGTTCCATTAACAGCCATTTGCTGACTGCACA
GCCCTGGATGGAAGATCTTGGGGTGATGATTAACCAAATTGAGGAGATTGAACGGCATCT
TGCCTACCTTAAATGGATTTCACAAATTGAAGAACTAAGTGATAACATTCAGCAATATCT
GATGACCAATAATGTCCCAGAGGCAGCCTCTACTCTGGTGTCTATGGCAGAGCTTGACAT
CAAGCTTCAGGAATCATCCTGTACTCATCTTCTTGGTTTCATGAGGGCCACTGTTAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTGCCGTGGCGTCCAACGCTAAGGTCTCGAAAGGTTCAGCCGCTGTCTAGCCGCTGG
CCGGAGCCAGGGTCCACTGACCACGCTGGCTGCACATGGAACCGAGGACTCGCGCGGAGG
CAGGATGCTCCCGGCCAGCGAGATCGGCGAAGCGCCAGCAACCCCGTGCTGTTCTGAAAA
TGGTGACCAAAGGAAGGATGTCAAGGACAAAAGTGAAATAAATATTACAGCTCTCACTGG
AAATGAACAAGTCTGTGAAGGCACTGATAATGGTGATCTCCCTTCCTATGTGTCAGCATT
TATAGAAAAGGAAGTTGGAAATGACCTTAAATCTTTAAAGAAACTTGATAAACTCATAGA
ACAGATGACAGAAAGTAAAATGCAATTAGAAGAACAGGTACTTACAGTTTCATCAGAAAT
CCCTAAAAGAATTCAGAGTGCCTTAAAAAATGCCGACGAATCAAAGCAGTTCCTTACTCA
GTTTCTGGAGCAAGAAACCCATCTCTTTAGTTCCATTAACAGCCATTTGCTGACTGCACA
GCCCTGGATGGAAGATCTTGGGGTGATGATTAACCAAATTGAGGAGATTGAACGGCATCT
TGCCTACCTTAAATGGATTTCACAAATTGAAGAACTAAGTGATAACATTCAGCAATATCT
GATGACCAATAATGTCCCAGAGGCAGCCTCTACTCTGGTGTCTATGGCAGAGCTTGACAT
CAAGCTTCAGGAATCATCCTGTACTCATCTTCTTGGTTTCATGAGGGCCACTGTTAAATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61819423|ref|XP_587859.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61819423|ref|XP_587859.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               474-593, + strand, RNAz p=0.66012

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               474-593, + strand, RNAz p=0.66012

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-197, gnl|bosTau2|chr4 (22716500-22716312)
               

               
               1-197, gnl|canFam2|chr18 (17867428-17867240)
               

               
               1-197, gnl|echTel1|scaffold_321703 (3246-3562)
               

               
               1-197, gnl|hg17|chr7 (104766587-104766871)
               

               
               1-197, gnl|Hg17|chr7 (104766591-104766784)
               

               
               1-197, gnl|loxAfr1|scaffold_7615 (31186-31519)
               

               
               1-197, gnl|mm7|chr5 (22828203-22828488)
               

               
               1-197, gnl|Mm7|chr5 (22828207-22828404)
               

               
               1-197, gnl|monDom2|scaffold_30 (31759987-31760341)
               

               
               1-197, gnl|oryCun1|scaffold_214333 (51441-51687)
               

               
               1-197, gnl|panTro1|chr6 (106605967-106606252)
               

               
               1-197, gnl|rheMac2|chr3 (142945074-142945359)
               

               
               1-197, gnl|rn3|chr4 (6729036-6728737)
               


               
               395-639, gnl|bosTau2|chr4 (22708562-22708318)
               

               
               395-639, gnl|Hg17|chr7 (104776803-104777047)
               

               
               395-639, gnl|Mm7|chr5 (22841085-22841329)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chr4 (22716500-22716312)
               

               
               1-197, gnl|canFam2|chr18 (17867428-17867240)
               

               
               1-197, gnl|echTel1|scaffold_321703 (3246-3562)
               

               
               1-197, gnl|hg17|chr7 (104766587-104766871)
               

               
               1-197, gnl|Hg17|chr7 (104766591-104766784)
               

               
               1-197, gnl|loxAfr1|scaffold_7615 (31186-31519)
               

               
               1-197, gnl|mm7|chr5 (22828203-22828488)
               

               
               1-197, gnl|Mm7|chr5 (22828207-22828404)
               

               
               1-197, gnl|monDom2|scaffold_30 (31759987-31760341)
               

               
               1-197, gnl|oryCun1|scaffold_214333 (51441-51687)
               

               
               1-197, gnl|panTro1|chr6 (106605967-106606252)
               

               
               1-197, gnl|rheMac2|chr3 (142945074-142945359)
               

               
               1-197, gnl|rn3|chr4 (6729036-6728737)
               


               
               395-639, gnl|bosTau2|chr4 (22708562-22708318)
               

               
               395-639, gnl|Hg17|chr7 (104776803-104777047)
               

               
               395-639, gnl|Mm7|chr5 (22841085-22841329)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	1-197, gnl\|bosTau2\|chr4 (22716500-22716312)
	1-197, gnl\|canFam2\|chr18 (17867428-17867240)
	1-197, gnl\|echTel1\|scaffold_321703 (3246-3562)
	1-197, gnl\|hg17\|chr7 (104766587-104766871)
	1-197, gnl\|Hg17\|chr7 (104766591-104766784)
	1-197, gnl\|loxAfr1\|scaffold_7615 (31186-31519)
	1-197, gnl\|mm7\|chr5 (22828203-22828488)
	1-197, gnl\|Mm7\|chr5 (22828207-22828404)
	1-197, gnl\|monDom2\|scaffold_30 (31759987-31760341)
	1-197, gnl\|oryCun1\|scaffold_214333 (51441-51687)
	1-197, gnl\|panTro1\|chr6 (106605967-106606252)
	1-197, gnl\|rheMac2\|chr3 (142945074-142945359)
	1-197, gnl\|rn3\|chr4 (6729036-6728737)

	395-639, gnl\|bosTau2\|chr4 (22708562-22708318)
	395-639, gnl\|Hg17\|chr7 (104776803-104777047)
	395-639, gnl\|Mm7\|chr5 (22841085-22841329)