Non-Coding RNA Search

Ss1.1-Utr1-UTR010020H01.5

Sequence:


               
               CGCGCCGCCGCTTCCGCCCCTCCACAGGGAGGCTGGAGAGTAGTCATGGCGAGTTCAGCT
GCCTCCTCGGTGCGACCGCCCAGGCCCAAGAAAGAGCCGCAGACGCTCGTCATCCCCAAG
AATGCGGCGGAGGAGCAGAAGCTCAAGCTGGAACGGCTCATGAAGAACCCGGACAAAGCA
GTTCCAATTCCAGAAAAAATGAGTGAATGGGCACCTCGACCTCCCCCGGAATTTGTCCGA
GATGTAATGGGTTCAAGTGCTGGGGCCGGCAGCGGAGAGTTCCATGTGTACAGGCATCTG
CGCCGGAGAGAGTACCAGCGGCAGGACTACATGGATGCCATGGCTGAGAAGCAAAAACTG
GATGCAGAGTTTCAGAAAAGACTGGAAAGGAATAAGATTGCTGCAGAGGAGCAGACTGCA
AAGCGCCGGAAAAAGCGCCAGAAGTTAAAAGAGAAGAAATTATTGGCAAAGAAGATGAAA
CTTGAACAGAAGAAACAAAAAGAAGGATCCAGTCAGTCCCAGGAGCAGCTGTCCAGTAGC
TCAGAGGAGGCATCTGGAACGGAGGAGGAGGAGGAGGCGGCAGCGGCCGAGCCCAGCTTC
ATCATGGGGCGATGAGGATGTTGTCTGCAGCAGCTGTTGAGGCCTGTGACCAGGACCTCA
GAAAATCATCCTCCACGGGCCCCGAGGGGAAGGGAGCCTCTGTTTGCAGCTCACTTTCCC
TCCCAAAGCCGTGCTTGCAGAAGCAAGTAGGCCCCCACCCCCAGGGCTCGTCGTCCCCTG
TCCGCAGGACTCGGCAGGACTCGGCCCGGCCCGTGGGAGAGAGGACTGTCTCCTGACACT
GCCAAGGGCCCGGCCGGGGTCACAGACGTTTCCGCTAAAGGGGAAGCTGTCTTGCCTGTT
CCTCCAGTGCCTGTTCTCATGTAACTGAACAGTGATGAGTTTGGGGCTGGTTTCTGTGAA
AGGAATGTTTTAGTAAAAAACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCCGCCGCTTCCGCCCCTCCACAGGGAGGCTGGAGAGTAGTCATGGCGAGTTCAGCT
GCCTCCTCGGTGCGACCGCCCAGGCCCAAGAAAGAGCCGCAGACGCTCGTCATCCCCAAG
AATGCGGCGGAGGAGCAGAAGCTCAAGCTGGAACGGCTCATGAAGAACCCGGACAAAGCA
GTTCCAATTCCAGAAAAAATGAGTGAATGGGCACCTCGACCTCCCCCGGAATTTGTCCGA
GATGTAATGGGTTCAAGTGCTGGGGCCGGCAGCGGAGAGTTCCATGTGTACAGGCATCTG
CGCCGGAGAGAGTACCAGCGGCAGGACTACATGGATGCCATGGCTGAGAAGCAAAAACTG
GATGCAGAGTTTCAGAAAAGACTGGAAAGGAATAAGATTGCTGCAGAGGAGCAGACTGCA
AAGCGCCGGAAAAAGCGCCAGAAGTTAAAAGAGAAGAAATTATTGGCAAAGAAGATGAAA
CTTGAACAGAAGAAACAAAAAGAAGGATCCAGTCAGTCCCAGGAGCAGCTGTCCAGTAGC
TCAGAGGAGGCATCTGGAACGGAGGAGGAGGAGGAGGCGGCAGCGGCCGAGCCCAGCTTC
ATCATGGGGCGATGAGGATGTTGTCTGCAGCAGCTGTTGAGGCCTGTGACCAGGACCTCA
GAAAATCATCCTCCACGGGCCCCGAGGGGAAGGGAGCCTCTGTTTGCAGCTCACTTTCCC
TCCCAAAGCCGTGCTTGCAGAAGCAAGTAGGCCCCCACCCCCAGGGCTCGTCGTCCCCTG
TCCGCAGGACTCGGCAGGACTCGGCCCGGCCCGTGGGAGAGAGGACTGTCTCCTGACACT
GCCAAGGGCCCGGCCGGGGTCACAGACGTTTCCGCTAAAGGGGAAGCTGTCTTGCCTGTT
CCTCCAGTGCCTGTTCTCATGTAACTGAACAGTGATGAGTTTGGGGCTGGTTTCTGTGAA
AGGAATGTTTTAGTAAAAAACAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5R5J3_PONPY

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5R5J3_PONPY

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               43-351, + strand, RNAz p=0.588688

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-351, + strand, RNAz p=0.588688

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC014298, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC014298, +

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               43-172, gnl|bosTau2|chr25 (32164993-32165122)
               

               
               43-172, gnl|Hg17|chr7 (101630576-101630705)
               

               
               43-172, gnl|Mm7|chr5 (135170180-135170054)
               


               
               250-351, gnl|bosTau2|chr25 (32166604-32166705)
               

               
               250-351, gnl|canFam2|chr6 (10769566-10769446)
               

               
               250-351, gnl|danRer3|chr5 (66006707-66006826)
               

               
               250-351, gnl|dasNov1|scaffold_172038 (4742-4623)
               

               
               250-351, gnl|echTel1|scaffold_290507 (4987-5081)
               

               
               250-351, gnl|hg17|chr7 (101633712-101633832)
               

               
               250-351, gnl|Hg17|chr7 (101633714-101633815)
               

               
               250-351, gnl|mm7|chr5 (135165682-135165570)
               

               
               250-351, gnl|Mm7|chr5 (135165678-135165577)
               

               
               250-351, gnl|rn3|chr12 (21580041-21580157)
               

               
               250-351, gnl|tetNig1|chr14 (8842308-8842186)
               


               
               504-646, gnl|bosTau2|chr25 (31058936-31059068)
               

               
               504-646, gnl|Hg17|chr7 (101659179-101659310)
               

               
               504-646, gnl|Mm7|chr5 (135152778-135152652)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-172, gnl|bosTau2|chr25 (32164993-32165122)
               

               
               43-172, gnl|Hg17|chr7 (101630576-101630705)
               

               
               43-172, gnl|Mm7|chr5 (135170180-135170054)
               


               
               250-351, gnl|bosTau2|chr25 (32166604-32166705)
               

               
               250-351, gnl|canFam2|chr6 (10769566-10769446)
               

               
               250-351, gnl|danRer3|chr5 (66006707-66006826)
               

               
               250-351, gnl|dasNov1|scaffold_172038 (4742-4623)
               

               
               250-351, gnl|echTel1|scaffold_290507 (4987-5081)
               

               
               250-351, gnl|hg17|chr7 (101633712-101633832)
               

               
               250-351, gnl|Hg17|chr7 (101633714-101633815)
               

               
               250-351, gnl|mm7|chr5 (135165682-135165570)
               

               
               250-351, gnl|Mm7|chr5 (135165678-135165577)
               

               
               250-351, gnl|rn3|chr12 (21580041-21580157)
               

               
               250-351, gnl|tetNig1|chr14 (8842308-8842186)
               


               
               504-646, gnl|bosTau2|chr25 (31058936-31059068)
               

               
               504-646, gnl|Hg17|chr7 (101659179-101659310)
               

               
               504-646, gnl|Mm7|chr5 (135152778-135152652)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	43-172, gnl\|bosTau2\|chr25 (32164993-32165122)
	43-172, gnl\|Hg17\|chr7 (101630576-101630705)
	43-172, gnl\|Mm7\|chr5 (135170180-135170054)

	250-351, gnl\|bosTau2\|chr25 (32166604-32166705)
	250-351, gnl\|canFam2\|chr6 (10769566-10769446)
	250-351, gnl\|danRer3\|chr5 (66006707-66006826)
	250-351, gnl\|dasNov1\|scaffold_172038 (4742-4623)
	250-351, gnl\|echTel1\|scaffold_290507 (4987-5081)
	250-351, gnl\|hg17\|chr7 (101633712-101633832)
	250-351, gnl\|Hg17\|chr7 (101633714-101633815)
	250-351, gnl\|mm7\|chr5 (135165682-135165570)
	250-351, gnl\|Mm7\|chr5 (135165678-135165577)
	250-351, gnl\|rn3\|chr12 (21580041-21580157)
	250-351, gnl\|tetNig1\|chr14 (8842308-8842186)

	504-646, gnl\|bosTau2\|chr25 (31058936-31059068)
	504-646, gnl\|Hg17\|chr7 (101659179-101659310)
	504-646, gnl\|Mm7\|chr5 (135152778-135152652)

	fty (0.17584)
	ton (0.1755)
	nco (0.161734)
	nbm (0.0993246)
	jej (0.0989218)