Ss1.1-Utr1-UTR010021B04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTGCCCGAGAGGAAAGGGGAATGGCGGCGGCGGCGGCGGCAGGCTGGTTTTGGCTCTG GGGCTGGGGCCGGCGGTGCCCGGGGAGGCCTGGGCTTCCCGGCCCCGGCCCTGGCCCCAT TACACGTTTACTCTTTCTACTGTTGCTGGGGCCAGTGACTGCGGATATAACTGACGGCAA CAGCGAGCACCTTAAGCGGGAGCATTCGCTTATTAAGCCCTACCAAGGGGTCGGTTCCAG CTCCACGCTCTTCTGGGACTTCCAAGGCAGCACCATACTCACTAGCCAGTACCTGCGTCT GACCCCTGACGAGCGCAGCAAAGAAGGCTCTATTTGGAACCACCTGCCTTGCTTCCTCAA GGACTGGGAGATGCACGTCCACTTCAAAGTCCATGGCGCAGGGAAGAAGAATCTCCATGG GGATGGCATCGCCTTGTGGTACACCCGGGACCGCATGGTGCCAGGGCCTGTGTTTGGAAG CAAAGACAACTTCCATGGCTTAGCCATCTTCCTGGACACATACCCCAATGATGAGACCAC GGAGCGCGTGTTCCCGTACATCTCCGTGATGGTGAACAATGGCTCCCTGTCCTACGACCA CAGCAAGGACGGCCGCTGGACCGAGCTGGCGGGCTGCACAGCTGACTTGCGCAACCGCAA CCACGACACCTTCCTGGCCGTCCGCTACTCCCGGGGCCGCCTGACGGTGATGACCGACCT GGAGGACAAGAACGAGTGGAAGAACTGCATCGACATCACGGGTGTGCGCCTGCCCACCGG CTACTACTTTGGAGCCTCGGCTGGCACCGGTGACCTATCTGACAATCACGACATCATCTC CATGAAGCTGTTCCAGCTCATGGTGGAGCACACGCCTGATGAGGAGAACATCGACTGGAC CAAGATCGAGCCCAGTGTCAACTTCCTCAAGTCTCCCAAAGACAACGTGGACGACCCGAC GGGGAACTTCCGCAGCGGGCCCCTGACAGGGTGGCGGGTGTTCCTGCTGCTGCTGTGCGC GCTCCTGGGCATCATCGTGTGCGCCGTGGTGGGGGCCGTGGTGTTTCAGAAGCGGCAGGA GCGGAACAAGCGTTTCTACTGAGTGGTCGGTGTGCGGCTCGCAGATGGGCCCCAGTGCTA ATGTGAACTTTTTTTTTTACCGGGATTGTTAAAAGACAAATAAGACGATCTTATTTCTTA ACCATTTCAAAGAAATAATTAAAGTATTTTCGTACATTTTGCTTCTTGCCCGGTGGGGAC AGGCAGGACTGGGTAATCAGTTTGATGCACCCTCAGCTGGGGGTGGCGGAGGCCCTGGCC CAAAGCTGGCCTCACAGGAGCAGGGGGCTGTGCCTGGAGCTGGGCCGAGACCCTGGCAGG TGGCTGTTGAACACTGGAGGTCCCCAGAGCACACTGGGACGGGTGCCTGAGGACCCGAAT GGTGATCTTGTTCTGTGCTTTGTGTGGCCAAGGAGGCTGACTGGGGAGCCTGGGCCTCCT GGTCACCCTCCAAGCTTCTTCCCAAGGTTTACCCTCCAGCGCGGCAGGAGGAGCGGTGTG GTGGGGCCCAGAGTGTGACCGTTTGCTAAATAAAGTGAAATCACCAACCTCAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTGCCCGAGAGGAAAGGGGAATGGCGGCGGCGGCGGCGGCAGGCTGGTTTTGGCTCTG GGGCTGGGGCCGGCGGTGCCCGGGGAGGCCTGGGCTTCCCGGCCCCGGCCCTGGCCCCAT TACACGTTTACTCTTTCTACTGTTGCTGGGGCCAGTGACTGCGGATATAACTGACGGCAA CAGCGAGCACCTTAAGCGGGAGCATTCGCTTATTAAGCCCTACCAAGGGGTCGGTTCCAG CTCCACGCTCTTCTGGGACTTCCAAGGCAGCACCATACTCACTAGCCAGTACCTGCGTCT GACCCCTGACGAGCGCAGCAAAGAAGGCTCTATTTGGAACCACCTGCCTTGCTTCCTCAA GGACTGGGAGATGCACGTCCACTTCAAAGTCCATGGCGCAGGGAAGAAGAATCTCCATGG GGATGGCATCGCCTTGTGGTACACCCGGGACCGCATGGTGCCAGGGCCTGTGTTTGGAAG CAAAGACAACTTCCATGGCTTAGCCATCTTCCTGGACACATACCCCAATGATGAGACCAC GGAGCGCGTGTTCCCGTACATCTCCGTGATGGTGAACAATGGCTCCCTGTCCTACGACCA CAGCAAGGACGGCCGCTGGACCGAGCTGGCGGGCTGCACAGCTGACTTGCGCAACCGCAA CCACGACACCTTCCTGGCCGTCCGCTACTCCCGGGGCCGCCTGACGGTGATGACCGACCT GGAGGACAAGAACGAGTGGAAGAACTGCATCGACATCACGGGTGTGCGCCTGCCCACCGG CTACTACTTTGGAGCCTCGGCTGGCACCGGTGACCTATCTGACAATCACGACATCATCTC CATGAAGCTGTTCCAGCTCATGGTGGAGCACACGCCTGATGAGGAGAACATCGACTGGAC CAAGATCGAGCCCAGTGTCAACTTCCTCAAGTCTCCCAAAGACAACGTGGACGACCCGAC GGGGAACTTCCGCAGCGGGCCCCTGACAGGGTGGCGGGTGTTCCTGCTGCTGCTGTGCGC GCTCCTGGGCATCATCGTGTGCGCCGTGGTGGGGGCCGTGGTGTTTCAGAAGCGGCAGGA GCGGAACAAGCGTTTCTACTGAGTGGTCGGTGTGCGGCTCGCAGATGGGCCCCAGTGCTA ATGTGAACTTTTTTTTTTACCGGGATTGTTAAAAGACAAATAAGACGATCTTATTTCTTA ACCATTTCAAAGAAATAATTAAAGTATTTTCGTACATTTTGCTTCTTGCCCGGTGGGGAC AGGCAGGACTGGGTAATCAGTTTGATGCACCCTCAGCTGGGGGTGGCGGAGGCCCTGGCC CAAAGCTGGCCTCACAGGAGCAGGGGGCTGTGCCTGGAGCTGGGCCGAGACCCTGGCAGG TGGCTGTTGAACACTGGAGGTCCCCAGAGCACACTGGGACGGGTGCCTGAGGACCCGAAT GGTGATCTTGTTCTGTGCTTTGTGTGGCCAAGGAGGCTGACTGGGGAGCCTGGGCCTCCT GGTCACCCTCCAAGCTTCTTCCCAAGGTTTACCCTCCAGCGCGGCAGGAGGAGCGGTGTG GTGGGGCCCAGAGTGTGACCGTTTGCTAAATAAAGTGAAATCACCAACCTCAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1323-1438, + strand, RNAz p=0.692232 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1323-1438, + strand, RNAz p=0.692232 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_006816, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-228, gnl|bosTau2|chr7 (21575882-21575655) | |
| 1-228, gnl|Hg17|chr5 (176711276-176711058) | |
| 1-228, gnl|Mm7|chr13 (54443238-54443013) | |
| 346-470, gnl|bosTau2|chr11 (3565167-3565291) | |
| 346-470, gnl|canFam2|chr10 (48347913-48347805) | |
| 346-470, gnl|danRer3|chr9 (39100035-39099942) | |
| 346-470, gnl|dasNov1|scaffold_5366 (50404-50319) | |
| 346-470, gnl|echTel1|scaffold_320008 (232091-232200) | |
| 346-470, gnl|fr1|chrUn (146686781-146686666) | |
| 346-470, gnl|hg17|chr2 (96822003-96822112) | |
| 346-470, gnl|Hg17|chr2 (96822138-96822014) | |
| 346-470, gnl|loxAfr1|scaffold_11525 (65872-65980) | |
| 346-470, gnl|mm7|chr1 (36680972-36681082) | |
| 346-470, gnl|Mm7|chr1 (36681108-36680983) | |
| 346-470, gnl|monDom2|scaffold_1 (154339203-154339312) | |
| 346-470, gnl|oryCun1|scaffold_200140 (10360-10250) | |
| 346-470, gnl|panTro1|chr12 (99842927-99843036) | |
| 346-470, gnl|rheMac2|chr13 (97156623-97156732) | |
| 346-470, gnl|rn3|chr9 (35380362-35380472) | |
| 346-470, gnl|tetNig1|chr4 (2531993-2531901) | |
| 346-470, gnl|xenTro1|scaffold_217 (146863-146956) | |
| 543-710, gnl|bosTau2|chr11 (3574538-3574705) | |
| 543-710, gnl|Hg17|chr2 (96799638-96799469) | |
| 543-710, gnl|Mm7|chr1 (36669844-36669677) | |
| 933-1612, gnl|bosTau2|chr7 (21555688-21554994) | |
| 933-1612, gnl|Hg17|chr5 (176691862-176691169) | |
| 933-1612, gnl|Mm7|chr13 (54427107-54426487) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-228, gnl|bosTau2|chr7 (21575882-21575655) | |
| 1-228, gnl|Hg17|chr5 (176711276-176711058) | |
| 1-228, gnl|Mm7|chr13 (54443238-54443013) | |
| 346-470, gnl|bosTau2|chr11 (3565167-3565291) | |
| 346-470, gnl|canFam2|chr10 (48347913-48347805) | |
| 346-470, gnl|danRer3|chr9 (39100035-39099942) | |
| 346-470, gnl|dasNov1|scaffold_5366 (50404-50319) | |
| 346-470, gnl|echTel1|scaffold_320008 (232091-232200) | |
| 346-470, gnl|fr1|chrUn (146686781-146686666) | |
| 346-470, gnl|hg17|chr2 (96822003-96822112) | |
| 346-470, gnl|Hg17|chr2 (96822138-96822014) | |
| 346-470, gnl|loxAfr1|scaffold_11525 (65872-65980) | |
| 346-470, gnl|mm7|chr1 (36680972-36681082) | |
| 346-470, gnl|Mm7|chr1 (36681108-36680983) | |
| 346-470, gnl|monDom2|scaffold_1 (154339203-154339312) | |
| 346-470, gnl|oryCun1|scaffold_200140 (10360-10250) | |
| 346-470, gnl|panTro1|chr12 (99842927-99843036) | |
| 346-470, gnl|rheMac2|chr13 (97156623-97156732) | |
| 346-470, gnl|rn3|chr9 (35380362-35380472) | |
| 346-470, gnl|tetNig1|chr4 (2531993-2531901) | |
| 346-470, gnl|xenTro1|scaffold_217 (146863-146956) | |
| 543-710, gnl|bosTau2|chr11 (3574538-3574705) | |
| 543-710, gnl|Hg17|chr2 (96799638-96799469) | |
| 543-710, gnl|Mm7|chr1 (36669844-36669677) | |
| 933-1612, gnl|bosTau2|chr7 (21555688-21554994) | |
| 933-1612, gnl|Hg17|chr5 (176691862-176691169) | |
| 933-1612, gnl|Mm7|chr13 (54427107-54426487) |
| Expressed library(ies): 37 entry(ies) | More info |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
| amn (0.835422) | |
| cli (0.764059) | |
| cje (0.660939) | |
| cga (0.558191) | |
| nco (0.485201) | |
| pty (0.428143) | |
| ute (0.398353) | |
| cov (0.396458) | |
| col (0.390016) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| cly (0.361925) | |
| med (0.348756) | |
| cty (0.31224) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| sto (0.179824) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| mga (0.160205) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| cli (0.764059) | |
| cje (0.660939) | |
| cga (0.558191) | |
| nco (0.485201) | |
| pty (0.428143) | |
| ute (0.398353) | |
| cov (0.396458) | |
| col (0.390016) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| cly (0.361925) | |
| med (0.348756) | |
| cty (0.31224) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| sto (0.179824) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| mga (0.160205) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |