Non-Coding RNA Search

Ss1.1-Utr1-UTR010021B07.5

Sequence:


               
               TCCGGCTGCAGTGCTTTCAGTATAGCTCGCACCTTCCCTCTCTCTCCACGGTGGCTGCTA
ACGGCGGGTTGCGCAGCGGAGGGGCCCGAGCTGGGGGCAAGCCGGGAGTCCCCGGCCTTG
GGCGCCTTCACGCAATCTCAGAGCGGATAATGCTGTGAACTGGCGCCGCGCCCGCCGACC
CGGCTGGATCTGCGCGTGGCGGGCAGGGACTGCGTGCGCCCTCGGAAAGTGTCGGTGCCG
GGCGCCTGGCCCCGGGGCCAGCGGCTGGGATCCTTGGCGCCGCTGGTTTCTCCATGCTGT
GGAAGGGATTGGTGGATATAACAGGCTCTCCAGAAAGTTCTGCTTGGTTGTAAGTCCAGA
AGGCCTGTTAGACCTCCGTCTTGTTTCAGAGTCACTTCTGAAGCTACTTGAGAAAAATAA
TGTGACAGTTCCTATCAAAAAGTATACTGGGAAACATAAAGCATCCGTGAAGAAAGTGGC
CCTTTTTCCATTTTGCAAAATCAGTGTTCTCCAATTCCAAAATGCCAGCCAAGACCCCAA
TTTACCTGAAAGCTGCCAATAACAAGAAAGGAAAGAAATTTAAGCTGAGGGACATCTTGT
CTCCAGATATGATCAGCCCTCCCCTTGGAGACTTCCGCCACACCATTCACATCGGCAAGG
AGGGCCAGCATGACGTCTTTGGAGACATTTCCTTTCTTCAGGGGAACTATGAGCTTCTAC
CTGGAAACCAGGAGAAGGCACACATGGGCCAGTTCCCTGGGCATAATGAGTTCTTCCGGG
CCAACAGCACCTCCGACTCCATGTTCACAGAAACACCCTCGCCAGTGCTCAAAAATGCCA
TCTCCCTCCCAACCATCGGAGGGTCCCAGGCACTCATGTTGCCCTTATTGTCACCAGTGA
CATTCAATTCCAAACAGGAGTCCTTTGGCCCAGGAAAGCTGCCCCGGCTTAGCTGTGAGC
CAGTCGTGGAAGAGAAGGCTCCAGAGAAAAGCAGTCTGTTGGAGAATGGGACGGTCCACC
AGGGGGATGTCTCATGGGGCTCCAGTGGGTCCGCATCCCAGTCCAGCCAGGGCAGGGACA
GCCACTCCTCCAGCCTCTCTGAACAGTACGCCGACTGGGCGGCTGAAGATATGTTTGACC
ATCCCGCCCCATGCGAGCTCCTCAAGGAAAAGACTAAATCAGAGGAGTCCCTCTCTGATC
TCACAGGTTCCCTCCTCTCCCTGCAACTTGATCTTGGGCCCTCATTTCTGGATGAGGTGC
TGAATGTCATGGATAAAAATAAGTAACAGGACTCTGCAGGCTCTTTTCCATTGGAATAAA
ATGTATCAAAAAACCGACTAAACAGTCGAAGAGAAGAGCTTTGCAGGCTGTATTTGTTGT
CATGTGATGGGTTTTCTAAAATAACGTTCCTATAAAATATTTTTTTACCTGGTATGCCCT
GTTTGCAAAAACAGTTAAAAAAAAAAAAAAAAAGCCCATCCTGGCAAAGAGGAAGTGAAT
CAGAACCCATTTCTGGCGGGCACTGGTAATGTACAGTTCACATTTTTTGTTTCCAGACAC
ATAAGAAATCTGGCTTGGCCAGGATTGGCACTACTTAGCTATGAAGGGCTATGCCAATCA
TATTAAGGACTTTTACAGTACTCATGTTCTGAGCAAGAGGAAATCAACATTTATTTAACA
CCTAAGCCTTTTTTCTAGACTCTTTTTCTATATTGTATTGTTTGGACTCATCAGAGCAAA
TTCTTCAGTGTTAAAACTTTTCTGTTTTCACATTTGAACAATTTTATGGGTTTTGGGGAT
TTGCTTGTAGCTCTTATATATCCCTATATATAATATCTATATCGTGAAATTTTGACTGTC
AGCTACATGTTGGTAAGACACAAGCAAAGTATTACTGTAACTAAGTTATTTTTAAAGTTA
AAATATATTTTTATGTGCCTTCAGCTTTTTATTGCAAAGTCTACATTTTATAGATATTAC
ATCAAATGTGGTCATTTGACTTCTTTCCATTGGGGTTCCATTGTAAGCTGTGTATTAGTG
TATGTTTGGAAAGTGTATTCATACTTAGCTTTTTTTTTTCCCTTCATCTGTTATCATACT
TTTCACAGCAGCCAACAATGGACTGTAAAGTGTAAAGGCACAGGTTACTCACATTGCTTC
TGCAGAGACTGTGGGCTACACCACTGATGTTATTTGGAAATGTGGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGGCTGCAGTGCTTTCAGTATAGCTCGCACCTTCCCTCTCTCTCCACGGTGGCTGCTA
ACGGCGGGTTGCGCAGCGGAGGGGCCCGAGCTGGGGGCAAGCCGGGAGTCCCCGGCCTTG
GGCGCCTTCACGCAATCTCAGAGCGGATAATGCTGTGAACTGGCGCCGCGCCCGCCGACC
CGGCTGGATCTGCGCGTGGCGGGCAGGGACTGCGTGCGCCCTCGGAAAGTGTCGGTGCCG
GGCGCCTGGCCCCGGGGCCAGCGGCTGGGATCCTTGGCGCCGCTGGTTTCTCCATGCTGT
GGAAGGGATTGGTGGATATAACAGGCTCTCCAGAAAGTTCTGCTTGGTTGTAAGTCCAGA
AGGCCTGTTAGACCTCCGTCTTGTTTCAGAGTCACTTCTGAAGCTACTTGAGAAAAATAA
TGTGACAGTTCCTATCAAAAAGTATACTGGGAAACATAAAGCATCCGTGAAGAAAGTGGC
CCTTTTTCCATTTTGCAAAATCAGTGTTCTCCAATTCCAAAATGCCAGCCAAGACCCCAA
TTTACCTGAAAGCTGCCAATAACAAGAAAGGAAAGAAATTTAAGCTGAGGGACATCTTGT
CTCCAGATATGATCAGCCCTCCCCTTGGAGACTTCCGCCACACCATTCACATCGGCAAGG
AGGGCCAGCATGACGTCTTTGGAGACATTTCCTTTCTTCAGGGGAACTATGAGCTTCTAC
CTGGAAACCAGGAGAAGGCACACATGGGCCAGTTCCCTGGGCATAATGAGTTCTTCCGGG
CCAACAGCACCTCCGACTCCATGTTCACAGAAACACCCTCGCCAGTGCTCAAAAATGCCA
TCTCCCTCCCAACCATCGGAGGGTCCCAGGCACTCATGTTGCCCTTATTGTCACCAGTGA
CATTCAATTCCAAACAGGAGTCCTTTGGCCCAGGAAAGCTGCCCCGGCTTAGCTGTGAGC
CAGTCGTGGAAGAGAAGGCTCCAGAGAAAAGCAGTCTGTTGGAGAATGGGACGGTCCACC
AGGGGGATGTCTCATGGGGCTCCAGTGGGTCCGCATCCCAGTCCAGCCAGGGCAGGGACA
GCCACTCCTCCAGCCTCTCTGAACAGTACGCCGACTGGGCGGCTGAAGATATGTTTGACC
ATCCCGCCCCATGCGAGCTCCTCAAGGAAAAGACTAAATCAGAGGAGTCCCTCTCTGATC
TCACAGGTTCCCTCCTCTCCCTGCAACTTGATCTTGGGCCCTCATTTCTGGATGAGGTGC
TGAATGTCATGGATAAAAATAAGTAACAGGACTCTGCAGGCTCTTTTCCATTGGAATAAA
ATGTATCAAAAAACCGACTAAACAGTCGAAGAGAAGAGCTTTGCAGGCTGTATTTGTTGT
CATGTGATGGGTTTTCTAAAATAACGTTCCTATAAAATATTTTTTTACCTGGTATGCCCT
GTTTGCAAAAACAGTTAAAAAAAAAAAAAAAAAGCCCATCCTGGCAAAGAGGAAGTGAAT
CAGAACCCATTTCTGGCGGGCACTGGTAATGTACAGTTCACATTTTTTGTTTCCAGACAC
ATAAGAAATCTGGCTTGGCCAGGATTGGCACTACTTAGCTATGAAGGGCTATGCCAATCA
TATTAAGGACTTTTACAGTACTCATGTTCTGAGCAAGAGGAAATCAACATTTATTTAACA
CCTAAGCCTTTTTTCTAGACTCTTTTTCTATATTGTATTGTTTGGACTCATCAGAGCAAA
TTCTTCAGTGTTAAAACTTTTCTGTTTTCACATTTGAACAATTTTATGGGTTTTGGGGAT
TTGCTTGTAGCTCTTATATATCCCTATATATAATATCTATATCGTGAAATTTTGACTGTC
AGCTACATGTTGGTAAGACACAAGCAAAGTATTACTGTAACTAAGTTATTTTTAAAGTTA
AAATATATTTTTATGTGCCTTCAGCTTTTTATTGCAAAGTCTACATTTTATAGATATTAC
ATCAAATGTGGTCATTTGACTTCTTTCCATTGGGGTTCCATTGTAAGCTGTGTATTAGTG
TATGTTTGGAAAGTGTATTCATACTTAGCTTTTTTTTTTCCCTTCATCTGTTATCATACT
TTTCACAGCAGCCAACAATGGACTGTAAAGTGTAAAGGCACAGGTTACTCACATTGCTTC
TGCAGAGACTGTGGGCTACACCACTGATGTTATTTGGAAATGTGGGTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9UKI2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UKI2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1911-2029, - strand, RNAz p=0.69966

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1911-2029, - strand, RNAz p=0.69966

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               522-884, gnl|bosTau2|chr29 (34447545-34447910)
               

               
               522-884, gnl|Hg17|chr11 (64844946-64845311)
               

               
               522-884, gnl|Mm7|chr19 (5813481-5813116)
               


               
               1643-1827, gnl|bosTau2|chr26 (33175242-33175423)
               

               
               1643-1827, gnl|Hg17|chr2 (37784248-37784072)
               


               
               1911-2208, gnl|bosTau2|chr26 (33175706-33176012)
               

               
               1911-2208, gnl|Hg17|chr2 (37783988-37783701)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               522-884, gnl|bosTau2|chr29 (34447545-34447910)
               

               
               522-884, gnl|Hg17|chr11 (64844946-64845311)
               

               
               522-884, gnl|Mm7|chr19 (5813481-5813116)
               


               
               1643-1827, gnl|bosTau2|chr26 (33175242-33175423)
               

               
               1643-1827, gnl|Hg17|chr2 (37784248-37784072)
               


               
               1911-2208, gnl|bosTau2|chr26 (33175706-33176012)
               

               
               1911-2208, gnl|Hg17|chr2 (37783988-37783701)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               tra (0.492368)
               

               
               amn (0.417711)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               pla (0.267344)
               

               
               bla (0.248694)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.492368)
               

               
               amn (0.417711)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               pla (0.267344)
               

               
               bla (0.248694)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	522-884, gnl\|bosTau2\|chr29 (34447545-34447910)
	522-884, gnl\|Hg17\|chr11 (64844946-64845311)
	522-884, gnl\|Mm7\|chr19 (5813481-5813116)

	1643-1827, gnl\|bosTau2\|chr26 (33175242-33175423)
	1643-1827, gnl\|Hg17\|chr2 (37784248-37784072)

	1911-2208, gnl\|bosTau2\|chr26 (33175706-33176012)
	1911-2208, gnl\|Hg17\|chr2 (37783988-37783701)

	tra (0.492368)
	amn (0.417711)
	vin (0.332557)
	spl (0.286369)
	fce (0.271592)
	ssp (0.271039)
	pla (0.267344)
	bla (0.248694)
	med (0.232504)
	mgp (0.230681)
	ece (0.229305)
	aor (0.195274)
	nep (0.183925)
	gul (0.177588)
	sin (0.174948)
	nco (0.161734)
	tbr (0.154178)
	fat (0.147427)
	nca (0.136874)
	cov (0.132153)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	eep (0.122564)
	ecc (0.115035)
	cty (0.10408)
	ldo (0.0970026)