Ss1.1-Utr1-UTR010021D09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTATCGCGAGAGCTCCGTCCTTTTGAGAGCGCCTCCGGCGACCATAGCGCTACAGGTCA ATGGCCAGCAAGGAGGGGGGTCCGAGCCGGCGGCGGCGGCGGCAGCGGTGGCAGCGGGAG ACAAATGGAAACCTCCACAGGGGACGGACCCCGTCAAGATGGAGAACGGGCAGAACACAG CCGCCAAGCTGGGACTGCCTCCCCTGACGCCCGAGCAGCAGGAGGCCCTCCAGAAGGCCA AGAAGTACGCCATGGAGCAGAGCATCAAGAGCGTGCTGGTGAAGCAGACCATCGCGCACC AGCAGCAGCAGCTCACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTC TCTCACCTTTGCAATCGATGGCAGCTCAGCGGCAGCGGGCACTGGCCATCATGTGCCGGG TCTACGTGGGCTCCATCTACTACGAGCTGGGCGAGGACACCATCCGCCAGGCCTTTGCCC CCTTTGGGCCCATCAAGAGCATTGACATGTCCTGGGACTCCGTCACCATGAAGCACAAGG GCTTTGCTTTTGTGGAGTACGAGGTTCCGGAAGCGGCCCAGCTGGCCTTGGAGCAGATGA ACTCCGTGATGCTGGGCGGCCGGAACATCAAGGTGGGCAGACCCAGCAACATAGGGCAGG CCCAGCCCATCATAGACCAGCTGGCCGAGGAGGCACGAGCCTTTAACCGCATCTATGTGG CTTCCGTGCACCAGGACCTCTCGGACGACGACATCAAGAGCGTGTTTGAGGCCTTCGGCA AGATCAAATCTTGCACGCTGGCTCGGGACCCCACAACTGGCAAGCACAAGGGCTATGGCT TCATTGAATATGAAAAGGCCCAGTCGTCCCAGGATGCCGTGTCTTCCATGAACCTTTTTG ACCTGGGCGGCCAGTACTTGCGGGTGGGCAAGGCCGTCACACCCCCCATGCCCCTGCTTA CACCTGCCACACCTGGAGGCCTCCCACCTGCTGCCGCTGTGGCTGCTGCTGCAGCCACAG CTAAGATTACGGCTCAGGAAGCAGTGGCAGGAGCAGCGGTCCTGGGTACCCTGGCCACTC CTGGACTGGTGTCCCCTGCACTGACTCTGGCCCAGCCCCTGGGGGCTTTACCCCAGGCTG TCATGGCTGCCCAGGCCCCAGGAGTCATCACAGGTGTGACCCCGGCCCGGCCTCCCATTC CCGTCACCATCCCGTCTGTGGGCGTGGTGAACCCCATCCTGGCCAGCCCTCCGACGCTCG GTCTCCTGGAGCCCAAGAAAGAAAAGGAGGAGGAGGAGCTGTTTCCCGAGTCTGAGCGGC CGGAGATGCTGAGTGAGCAGGAGCACATGAGCATCTCGGGCAGCAGCGCCCGCCACATGG TGATGCAGAAGCTCCTCCGCAAGCAGGAGTCCACAGTGATGGTTCTGCGCAACATGGTGG ACCCCAAGGACATCGATGACGACCTGGAAGGGGAGGTGACTGAGGAGTGTGGCAAGTTTG GTGCTGTCAACCGTGTCATCATCTACCAAGAGAAGCAGGGCGAGGAGGAGGATGCGGAGA TCATTGTCAAGATTTTTGTGGAGTTTTCTGTAGCCTCTGAGACTCACAAGGCCATCCAAG CCCTTAATGGGCGCTGGTTTGCGGGCCGCAAGGTGGTGGCTGAAGTTTATGACCAGGAGC GTTTTGACAACAGTGACCTCTCCGCGTGACCTTGGCCCCGTTTCCCCGGACTCGCACTTT TTCCTTGTTTCCTCTGGGTTTTATAGAGTGATTCGGTGATACCTGGGGCTCAGCCGCCCA GCCTGTGGATAAAGGTGCAGATGCTGCTGGCCCTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTATCGCGAGAGCTCCGTCCTTTTGAGAGCGCCTCCGGCGACCATAGCGCTACAGGTCA ATGGCCAGCAAGGAGGGGGGTCCGAGCCGGCGGCGGCGGCGGCAGCGGTGGCAGCGGGAG ACAAATGGAAACCTCCACAGGGGACGGACCCCGTCAAGATGGAGAACGGGCAGAACACAG CCGCCAAGCTGGGACTGCCTCCCCTGACGCCCGAGCAGCAGGAGGCCCTCCAGAAGGCCA AGAAGTACGCCATGGAGCAGAGCATCAAGAGCGTGCTGGTGAAGCAGACCATCGCGCACC AGCAGCAGCAGCTCACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTC TCTCACCTTTGCAATCGATGGCAGCTCAGCGGCAGCGGGCACTGGCCATCATGTGCCGGG TCTACGTGGGCTCCATCTACTACGAGCTGGGCGAGGACACCATCCGCCAGGCCTTTGCCC CCTTTGGGCCCATCAAGAGCATTGACATGTCCTGGGACTCCGTCACCATGAAGCACAAGG GCTTTGCTTTTGTGGAGTACGAGGTTCCGGAAGCGGCCCAGCTGGCCTTGGAGCAGATGA ACTCCGTGATGCTGGGCGGCCGGAACATCAAGGTGGGCAGACCCAGCAACATAGGGCAGG CCCAGCCCATCATAGACCAGCTGGCCGAGGAGGCACGAGCCTTTAACCGCATCTATGTGG CTTCCGTGCACCAGGACCTCTCGGACGACGACATCAAGAGCGTGTTTGAGGCCTTCGGCA AGATCAAATCTTGCACGCTGGCTCGGGACCCCACAACTGGCAAGCACAAGGGCTATGGCT TCATTGAATATGAAAAGGCCCAGTCGTCCCAGGATGCCGTGTCTTCCATGAACCTTTTTG ACCTGGGCGGCCAGTACTTGCGGGTGGGCAAGGCCGTCACACCCCCCATGCCCCTGCTTA CACCTGCCACACCTGGAGGCCTCCCACCTGCTGCCGCTGTGGCTGCTGCTGCAGCCACAG CTAAGATTACGGCTCAGGAAGCAGTGGCAGGAGCAGCGGTCCTGGGTACCCTGGCCACTC CTGGACTGGTGTCCCCTGCACTGACTCTGGCCCAGCCCCTGGGGGCTTTACCCCAGGCTG TCATGGCTGCCCAGGCCCCAGGAGTCATCACAGGTGTGACCCCGGCCCGGCCTCCCATTC CCGTCACCATCCCGTCTGTGGGCGTGGTGAACCCCATCCTGGCCAGCCCTCCGACGCTCG GTCTCCTGGAGCCCAAGAAAGAAAAGGAGGAGGAGGAGCTGTTTCCCGAGTCTGAGCGGC CGGAGATGCTGAGTGAGCAGGAGCACATGAGCATCTCGGGCAGCAGCGCCCGCCACATGG TGATGCAGAAGCTCCTCCGCAAGCAGGAGTCCACAGTGATGGTTCTGCGCAACATGGTGG ACCCCAAGGACATCGATGACGACCTGGAAGGGGAGGTGACTGAGGAGTGTGGCAAGTTTG GTGCTGTCAACCGTGTCATCATCTACCAAGAGAAGCAGGGCGAGGAGGAGGATGCGGAGA TCATTGTCAAGATTTTTGTGGAGTTTTCTGTAGCCTCTGAGACTCACAAGGCCATCCAAG CCCTTAATGGGCGCTGGTTTGCGGGCCGCAAGGTGGTGGCTGAAGTTTATGACCAGGAGC GTTTTGACAACAGTGACCTCTCCGCGTGACCTTGGCCCCGTTTCCCCGGACTCGCACTTT TTCCTTGTTTCCTCTGGGTTTTATAGAGTGATTCGGTGATACCTGGGGCTCAGCCGCCCA GCCTGTGGATAAAGGTGCAGATGCTGCTGGCCCTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1035-1176, - strand, RNAz p=0.986619 | |
| 1528-1647, + strand, RNAz p=0.983123 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1035-1176, - strand, RNAz p=0.986619 | |
| 1528-1647, + strand, RNAz p=0.983123 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC011265, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 377-540, gnl|bosTau2|chr14 (331682-331519) | |
| 377-540, gnl|canFam2|chr13 (40408087-40408258) | |
| 377-540, gnl|danRer3|chr7 (29825617-29825788) | |
| 377-540, gnl|echTel1|scaffold_259385 (5984-6130) | |
| 377-540, gnl|fr1|chrUn (3518838-3518666) | |
| 377-540, gnl|galGal2|chrUn (148143662-148143832) | |
| 377-540, gnl|hg17|chr8 (144972525-144972697) | |
| 377-540, gnl|Hg17|chr8 (144972693-144972530) | |
| 377-540, gnl|loxAfr1|scaffold_92993 (194-51) | |
| 377-540, gnl|mm7|chr15 (76154953-76155125) | |
| 377-540, gnl|Mm7|chr15 (76155121-76154958) | |
| 377-540, gnl|monDom2|scaffold_79 (1574289-1574460) | |
| 377-540, gnl|panTro1|chr7 (148245057-148245229) | |
| 377-540, gnl|rheMac2|chr8 (146452402-146452574) | |
| 377-540, gnl|rn3|chr7 (114137448-114137620) | |
| 377-540, gnl|tetNig1|chr6 (4942747-4942579) | |
| 377-540, gnl|xenTro1|scaffold_1366 (98524-98694) | |
| 631-846, gnl|bosTau2|chr14 (331253-331038) | |
| 631-846, gnl|canFam2|chr13 (40407556-40407734) | |
| 631-846, gnl|danRer3|chr7 (29824214-29824392) | |
| 631-846, gnl|fr1|chrUn (3519912-3519734) | |
| 631-846, gnl|galGal2|chrUn (148141672-148141850) | |
| 631-846, gnl|hg17|chr8 (144972012-144972190) | |
| 631-846, gnl|Hg17|chr8 (144972235-144972020) | |
| 631-846, gnl|loxAfr1|scaffold_9763 (52207-52369) | |
| 631-846, gnl|mm7|chr15 (76154284-76154462) | |
| 631-846, gnl|Mm7|chr15 (76154507-76154292) | |
| 631-846, gnl|monDom2|scaffold_79 (1573173-1573351) | |
| 631-846, gnl|panTro1|chr7 (148244543-148244721) | |
| 631-846, gnl|rheMac2|chr8 (146451889-146452067) | |
| 631-846, gnl|rn3|chr7 (114136946-114137124) | |
| 631-846, gnl|tetNig1|chr6 (4943788-4943610) | |
| 631-846, gnl|xenTro1|scaffold_1366 (96649-96832) | |
| 1035-1176, gnl|bosTau2|chr14 (330627-330486) | |
| 1035-1176, gnl|Hg17|chr8 (144971627-144971486) | |
| 1035-1176, gnl|Mm7|chr15 (76153872-76153731) | |
| 1408-1836, gnl|bosTau2|chr14 (329978-329552) | |
| 1408-1836, gnl|Hg17|chr8 (144970979-144970536) | |
| 1408-1836, gnl|Mm7|chr15 (76153181-76152735) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 377-540, gnl|bosTau2|chr14 (331682-331519) | |
| 377-540, gnl|canFam2|chr13 (40408087-40408258) | |
| 377-540, gnl|danRer3|chr7 (29825617-29825788) | |
| 377-540, gnl|echTel1|scaffold_259385 (5984-6130) | |
| 377-540, gnl|fr1|chrUn (3518838-3518666) | |
| 377-540, gnl|galGal2|chrUn (148143662-148143832) | |
| 377-540, gnl|hg17|chr8 (144972525-144972697) | |
| 377-540, gnl|Hg17|chr8 (144972693-144972530) | |
| 377-540, gnl|loxAfr1|scaffold_92993 (194-51) | |
| 377-540, gnl|mm7|chr15 (76154953-76155125) | |
| 377-540, gnl|Mm7|chr15 (76155121-76154958) | |
| 377-540, gnl|monDom2|scaffold_79 (1574289-1574460) | |
| 377-540, gnl|panTro1|chr7 (148245057-148245229) | |
| 377-540, gnl|rheMac2|chr8 (146452402-146452574) | |
| 377-540, gnl|rn3|chr7 (114137448-114137620) | |
| 377-540, gnl|tetNig1|chr6 (4942747-4942579) | |
| 377-540, gnl|xenTro1|scaffold_1366 (98524-98694) | |
| 631-846, gnl|bosTau2|chr14 (331253-331038) | |
| 631-846, gnl|canFam2|chr13 (40407556-40407734) | |
| 631-846, gnl|danRer3|chr7 (29824214-29824392) | |
| 631-846, gnl|fr1|chrUn (3519912-3519734) | |
| 631-846, gnl|galGal2|chrUn (148141672-148141850) | |
| 631-846, gnl|hg17|chr8 (144972012-144972190) | |
| 631-846, gnl|Hg17|chr8 (144972235-144972020) | |
| 631-846, gnl|loxAfr1|scaffold_9763 (52207-52369) | |
| 631-846, gnl|mm7|chr15 (76154284-76154462) | |
| 631-846, gnl|Mm7|chr15 (76154507-76154292) | |
| 631-846, gnl|monDom2|scaffold_79 (1573173-1573351) | |
| 631-846, gnl|panTro1|chr7 (148244543-148244721) | |
| 631-846, gnl|rheMac2|chr8 (146451889-146452067) | |
| 631-846, gnl|rn3|chr7 (114136946-114137124) | |
| 631-846, gnl|tetNig1|chr6 (4943788-4943610) | |
| 631-846, gnl|xenTro1|scaffold_1366 (96649-96832) | |
| 1035-1176, gnl|bosTau2|chr14 (330627-330486) | |
| 1035-1176, gnl|Hg17|chr8 (144971627-144971486) | |
| 1035-1176, gnl|Mm7|chr15 (76153872-76153731) | |
| 1408-1836, gnl|bosTau2|chr14 (329978-329552) | |
| 1408-1836, gnl|Hg17|chr8 (144970979-144970536) | |
| 1408-1836, gnl|Mm7|chr15 (76153181-76152735) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| fty (0.703359) | |
| ese (0.632511) | |
| cly (0.361925) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| cty (0.31224) | |
| cag (0.302389) | |
| eje (0.296501) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| che (0.272628) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| jej (0.197844) | |
| col (0.195008) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| cov (0.132153) | |
| eru (0.120048) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.703359) | |
| ese (0.632511) | |
| cly (0.361925) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| cty (0.31224) | |
| cag (0.302389) | |
| eje (0.296501) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| che (0.272628) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| jej (0.197844) | |
| col (0.195008) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| cov (0.132153) | |
| eru (0.120048) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |