Ss1.1-Utr1-UTR010021F06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCCGGGCGGCGGGGAGGATCTAGACGCGCCTTTCCTGCCTAGCTGATGAGTCTAGGC CCTAAGAAGAAGCTTATGGAACGGAGAGGAGTGAGCAGCGGTGGCTGAGCGGCGGGGAGG ATCTAGACGCGAGCCCTCGCCTGCCTCGGCACACTGGAAGCCTCCATCCCTCCCTCCCCA CCTCTGCAGCCATGGTCTGGAAGAAGCTGGGCTCTGGCAACTTCTCCAGCTGCCCCAATG GCTCCCGCCAGTGGATATGGGACGTGTTTGGCGAGTGTGCCCAGGATGGCTGGGACGAGG CCAGCGTGGGCCTGGGCTTGATCTCCATCCTCTGCTTTGCTGCATCCACCTTCCCCCAGT ACATCAAGGCCTGCAAGACGGGCAACATGGACCAGGCCGTGTCCCTGTGGTTCCTCCTGG GCTGGATCGGCGGAGACTCCTGCAATCTCATCGGCTCCTTCCTCGCTGACCAGCTGCCCC TGCAGACCTACACAGCCGTGTACTATGTCTTGGCCGACGTGGTGATGCTATCGCTGTACT TTCACTACAAGTTTAAGAAACGCCCCTCTCCCTGGTCTGCCCACATCAATTCCATGCTCT TGTTCATCGTGGGCATGACGTGTGTCACCCCGCTGCTGAGCAGCTCTGGCGCCGGGGCTG CCCCGAGGGAGGTCTTCCGGGGGCGGACGCTCCTGTCTGTGGAGCCGGGCAGTAAGCCCT TCACCCGGCAGGAAATCATCGGCTTCGTCATCGGCTCTGTCTCCAGCGTGCTGTACCTGT TCTCCCGGCTGCCTCAGATCCGCACCAATTTCCTGCGGAAATCCACCCAGGGGATCTCCT ACTCGCTGTTCGCCTTGGTGATGCTGGGGAACACGCTGTACGGGCTGAGCGTGCTGCTCA AAAACCCCGAGGTGGGCCAGAGCGAGGGCAGCTACCTGCTGCACCACCTGCCCTGGCTCG TGGGCAGCCTGGGCGTCCTGCTGCTCGACACCATCATCTCCATACAGTTCCTGATATACA GGGACGCTGCCACCTCCTCCGAGCGCCAGCCGCTCCTCCCCAGCTGACCAGGACCCGGGC CAAGCCCAGGATGACAGGGACCTCCGGATGTCACATTCAGGAAGGAAGAAGTATGGGCAG TGACAGGGCTGCTGACCCTGGACTGGGCCTTGAAGGAAGCTGGGTGGGCCCAGATCTCCC AACCGCCACCCCCACACCTCCGAAACCTCTGTGAGCTGACTATTCCTGAAGCCTAGACTG ACTGACTCTTCCAGGAGCAGCACGGACCCAGGGGCCAGCCCCCCCACCCCTGCCCACCTT GGGACTCACCGCCCAGGTCTGAGACAGCCGTCCTTGGGGGCCTCCAGGGAGGGGCTGTAG CCAAGACCCTGCCTCTCAGGACTTGTGGCTGCCCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCCGGGCGGCGGGGAGGATCTAGACGCGCCTTTCCTGCCTAGCTGATGAGTCTAGGC CCTAAGAAGAAGCTTATGGAACGGAGAGGAGTGAGCAGCGGTGGCTGAGCGGCGGGGAGG ATCTAGACGCGAGCCCTCGCCTGCCTCGGCACACTGGAAGCCTCCATCCCTCCCTCCCCA CCTCTGCAGCCATGGTCTGGAAGAAGCTGGGCTCTGGCAACTTCTCCAGCTGCCCCAATG GCTCCCGCCAGTGGATATGGGACGTGTTTGGCGAGTGTGCCCAGGATGGCTGGGACGAGG CCAGCGTGGGCCTGGGCTTGATCTCCATCCTCTGCTTTGCTGCATCCACCTTCCCCCAGT ACATCAAGGCCTGCAAGACGGGCAACATGGACCAGGCCGTGTCCCTGTGGTTCCTCCTGG GCTGGATCGGCGGAGACTCCTGCAATCTCATCGGCTCCTTCCTCGCTGACCAGCTGCCCC TGCAGACCTACACAGCCGTGTACTATGTCTTGGCCGACGTGGTGATGCTATCGCTGTACT TTCACTACAAGTTTAAGAAACGCCCCTCTCCCTGGTCTGCCCACATCAATTCCATGCTCT TGTTCATCGTGGGCATGACGTGTGTCACCCCGCTGCTGAGCAGCTCTGGCGCCGGGGCTG CCCCGAGGGAGGTCTTCCGGGGGCGGACGCTCCTGTCTGTGGAGCCGGGCAGTAAGCCCT TCACCCGGCAGGAAATCATCGGCTTCGTCATCGGCTCTGTCTCCAGCGTGCTGTACCTGT TCTCCCGGCTGCCTCAGATCCGCACCAATTTCCTGCGGAAATCCACCCAGGGGATCTCCT ACTCGCTGTTCGCCTTGGTGATGCTGGGGAACACGCTGTACGGGCTGAGCGTGCTGCTCA AAAACCCCGAGGTGGGCCAGAGCGAGGGCAGCTACCTGCTGCACCACCTGCCCTGGCTCG TGGGCAGCCTGGGCGTCCTGCTGCTCGACACCATCATCTCCATACAGTTCCTGATATACA GGGACGCTGCCACCTCCTCCGAGCGCCAGCCGCTCCTCCCCAGCTGACCAGGACCCGGGC CAAGCCCAGGATGACAGGGACCTCCGGATGTCACATTCAGGAAGGAAGAAGTATGGGCAG TGACAGGGCTGCTGACCCTGGACTGGGCCTTGAAGGAAGCTGGGTGGGCCCAGATCTCCC AACCGCCACCCCCACACCTCCGAAACCTCTGTGAGCTGACTATTCCTGAAGCCTAGACTG ACTGACTCTTCCAGGAGCAGCACGGACCCAGGGGCCAGCCCCCCCACCCCTGCCCACCTT GGGACTCACCGCCCAGGTCTGAGACAGCCGTCCTTGGGGGCCTCCAGGGAGGGGCTGTAG CCAAGACCCTGCCTCTCAGGACTTGTGGCTGCCCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 879-998, - strand, RNAz p=0.709936 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 879-998, - strand, RNAz p=0.709936 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 131-355, gnl|bosTau2|chr2 (61236874-61237089) | |
| 131-355, gnl|Hg17|chr1 (19389399-19389641) | |
| 131-355, gnl|Mm7|chr4 (138685134-138684884) | |
| 356-485, gnl|bosTau2|chr2 (61243145-61243274) | |
| 356-485, gnl|Hg17|chr1 (19396433-19396562) | |
| 356-485, gnl|Mm7|chr4 (138680995-138680866) | |
| 574-716, gnl|bosTau2|chr2 (61244578-61244720) | |
| 574-716, gnl|canFam2|chr2 (82214019-82213801) | |
| 574-716, gnl|danRer3|chr8 (3603105-3603306) | |
| 574-716, gnl|dasNov1|scaffold_84856 (3674-3457) | |
| 574-716, gnl|echTel1|scaffold_232879 (9053-9282) | |
| 574-716, gnl|galGal2|chr21 (4501619-4501870) | |
| 574-716, gnl|hg17|chr1 (19397994-19398212) | |
| 574-716, gnl|Hg17|chr1 (19398045-19398187) | |
| 574-716, gnl|loxAfr1|scaffold_1127 (117139-116915) | |
| 574-716, gnl|mm7|chr4 (138679871-138679659) | |
| 574-716, gnl|Mm7|chr4 (138679833-138679691) | |
| 574-716, gnl|monDom2|scaffold_90 (409589-409786) | |
| 574-716, gnl|rheMac2|chr1 (21978934-21979151) | |
| 574-716, gnl|rn3|chr5 (158100390-158100155) | |
| 800-1001, gnl|bosTau2|chr2 (61245532-61245733) | |
| 800-1001, gnl|canFam2|chr2 (82213263-82213101) | |
| 800-1001, gnl|danRer3|chr8 (3605436-3605604) | |
| 800-1001, gnl|echTel1|scaffold_232879 (9913-10079) | |
| 800-1001, gnl|fr1|chrUn (103386826-103386975) | |
| 800-1001, gnl|galGal2|chr21 (4507465-4507630) | |
| 800-1001, gnl|hg17|chr1 (19398998-19399166) | |
| 800-1001, gnl|Hg17|chr1 (19399018-19399218) | |
| 800-1001, gnl|mm7|chr4 (138678881-138678715) | |
| 800-1001, gnl|Mm7|chr4 (138678858-138678661) | |
| 800-1001, gnl|monDom2|scaffold_90 (410745-410914) | |
| 800-1001, gnl|panTro1|chr1 (19691543-19691711) | |
| 800-1001, gnl|rheMac2|chr1 (21979942-21980110) | |
| 800-1001, gnl|rn3|chr5 (158099315-158099148) | |
| 800-1001, gnl|tetNig1|chrUn_random (101444083-101443930) | |
| 800-1001, gnl|xenTro1|scaffold_888 (360503-360345) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-355, gnl|bosTau2|chr2 (61236874-61237089) | |
| 131-355, gnl|Hg17|chr1 (19389399-19389641) | |
| 131-355, gnl|Mm7|chr4 (138685134-138684884) | |
| 356-485, gnl|bosTau2|chr2 (61243145-61243274) | |
| 356-485, gnl|Hg17|chr1 (19396433-19396562) | |
| 356-485, gnl|Mm7|chr4 (138680995-138680866) | |
| 574-716, gnl|bosTau2|chr2 (61244578-61244720) | |
| 574-716, gnl|canFam2|chr2 (82214019-82213801) | |
| 574-716, gnl|danRer3|chr8 (3603105-3603306) | |
| 574-716, gnl|dasNov1|scaffold_84856 (3674-3457) | |
| 574-716, gnl|echTel1|scaffold_232879 (9053-9282) | |
| 574-716, gnl|galGal2|chr21 (4501619-4501870) | |
| 574-716, gnl|hg17|chr1 (19397994-19398212) | |
| 574-716, gnl|Hg17|chr1 (19398045-19398187) | |
| 574-716, gnl|loxAfr1|scaffold_1127 (117139-116915) | |
| 574-716, gnl|mm7|chr4 (138679871-138679659) | |
| 574-716, gnl|Mm7|chr4 (138679833-138679691) | |
| 574-716, gnl|monDom2|scaffold_90 (409589-409786) | |
| 574-716, gnl|rheMac2|chr1 (21978934-21979151) | |
| 574-716, gnl|rn3|chr5 (158100390-158100155) | |
| 800-1001, gnl|bosTau2|chr2 (61245532-61245733) | |
| 800-1001, gnl|canFam2|chr2 (82213263-82213101) | |
| 800-1001, gnl|danRer3|chr8 (3605436-3605604) | |
| 800-1001, gnl|echTel1|scaffold_232879 (9913-10079) | |
| 800-1001, gnl|fr1|chrUn (103386826-103386975) | |
| 800-1001, gnl|galGal2|chr21 (4507465-4507630) | |
| 800-1001, gnl|hg17|chr1 (19398998-19399166) | |
| 800-1001, gnl|Hg17|chr1 (19399018-19399218) | |
| 800-1001, gnl|mm7|chr4 (138678881-138678715) | |
| 800-1001, gnl|Mm7|chr4 (138678858-138678661) | |
| 800-1001, gnl|monDom2|scaffold_90 (410745-410914) | |
| 800-1001, gnl|panTro1|chr1 (19691543-19691711) | |
| 800-1001, gnl|rheMac2|chr1 (21979942-21980110) | |
| 800-1001, gnl|rn3|chr5 (158099315-158099148) | |
| 800-1001, gnl|tetNig1|chrUn_random (101444083-101443930) | |
| 800-1001, gnl|xenTro1|scaffold_888 (360503-360345) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |