Ss1.1-Utr1-UTR010021G03.5
|
CTGCGGGCAGCTCCGCCCGGTCGGTTGGTCCGCGCGTTTCTCTGTGCGTGAGTCCGGGCC
GCCGGTTTCGCCCTCGCCATGGCCCCCTGGCTGCAGCTGCTGTTGCTGCTGGGGCTGCTC
CCGGACGCCGCTCCCGCCCCCAAGAAGCCCCGAGCGGCCGGCCCGCAGGCCAGGGAGCTG
GCGTCCCCGGAGCTCCTGGCGCCCGCCCGCTTCGCCCTGGAGATGTACAACCGCGGCCGG
GCTGCCGGGACGAGGGCCGCGTTGAGGGCCGTGCGCGGACGCGTCCGCCGGGCGGGCCGG
GGGTCGCTGTACTCCCTGAAGGCCACTCTGGTGGAGCCTCCCTGCAACGACCCTACGGTG
TGCCAGCTCCCTATATCCAAGAAAACCCTGCTCTGCAGCTTCGAAGTCCTGGACGAGCTG
GGAAAACACATGCTGCTGAGGCGGGACTGTGGCCCAGTGGATACCAAGGTTACAGATGAC
ACAAACGAGACTTTCAGTTCATTCCTCCCACTGTTGAACAAGGATCCCCTGCCCCAGGAC
TTTTCTGTGAAGATGGCTTCGATCTTCAAGGAATTTGTCACCACCTATAATCGGACGTAT
GATACAAAGGAGGAAGCCAGGTGGCGCATGTCCGTCTTCGCCAACAACATGGTGCGAGCG
CAGAAGATCCAGGCCCTGGACACTGGCACAGCTCGGTACGGGGTCACCAAGTTCAGTGAC
CTTACAGAGGAGGAGTTCCGCACCATCTACCTGAACCCCCTCCTGCAAGAGGAGCCCGGC
CGGAAGATGCGCCTCGCCAAGTCCGTCTCCAGCCTTCCTCCCCCCGAGTGGGACTGGAGG
AAAAAGGGGGCTGTCACCAAAGTCAAGGACCAGGGCATGTGCGGCTCCTGCTGGGCCTTT
TCCGTCACGGGCAACGTGGAGGGCCAGTGGTTCCTGAAGCAGGGGACGCTGCTCTCGCTC
TCGGAGCAGGAGCTCCTGGACTGCGACAAGGTGGACAAGGGCTGCATGGGCGGCTTGCCC
TCCAACGCCTACTCAGCCATAAAGACTCTGGGAGGGCTGGAGACGGAGGACGACTACAGC
TACCGGGGCCACCTGCAGACCTGCAGCTTCAACGCAGAGAAGGCCAAGGTCTACATCAAC
GACTCGGTGGAGCTGAGCCAGAATGAGCAGAAGCTGGCAGCCTGGCTGGCCGAGAAGGGC
CCCATCTCCGTTGCCATCAACGCCTTTGGCATGCAGTTCTACCGCCACGGGATCTCCCAC
CCCCTGAGGCCCCTCTGCAGCCCTTGGCTCATCGACCACGCTGTGCTGCTCGTGGGCTAC
GGCAACCGTTCTGCCACTCCCTTCTGGGCCATCAAGAACAGCTGGGGCACTGACTGGGGC
GAGGAGGGTTACTACTACTTGTACCGTGGGTCCGGGGCCTGTGGCGTGAACATCATGGCC
AGTTCGGCAGTGGTGAACTGAGGCGCACGACCAGAGCAGCCCCTTCCCCTGCCTGACCTG
CATGACCAGGCCCCTCCCCAGGGGGCACAGCCGACTGAGGGACAGGCACCAGGTACCTCA
GGGTGAGCAAAGGCCACTGGACTAGGGGCCCAGCCCCCCTCCCCGAAGCTCCCCATCTGC
ACCTTTGTTGAACTGTGGTAGCTAGGAGGATCTTGGGGTGAAGGGTGATTGTCTCGGCCA
CTGAAGCCGGGGCGAGAACACTGGGCTGGGGTCAGGAGCAGGTGGGAAGAAAGTACCCTG
GTCCCAAACCCAGCTGTGTCCTCAGCAGGCTCTGCCTTCCTGCCCCAGCTTTTCTCTGCT
GCTATAAATTTTCTGGTCCCCCTGGATTTGGGGACAGTGTTACCTTGCACATCTAGAGAC
TGTTGTAACCAACCTTTTCTAACACAATAAAGAGGTGTCCTGGGCCCCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGCGGGCAGCTCCGCCCGGTCGGTTGGTCCGCGCGTTTCTCTGTGCGTGAGTCCGGGCC
GCCGGTTTCGCCCTCGCCATGGCCCCCTGGCTGCAGCTGCTGTTGCTGCTGGGGCTGCTC
CCGGACGCCGCTCCCGCCCCCAAGAAGCCCCGAGCGGCCGGCCCGCAGGCCAGGGAGCTG
GCGTCCCCGGAGCTCCTGGCGCCCGCCCGCTTCGCCCTGGAGATGTACAACCGCGGCCGG
GCTGCCGGGACGAGGGCCGCGTTGAGGGCCGTGCGCGGACGCGTCCGCCGGGCGGGCCGG
GGGTCGCTGTACTCCCTGAAGGCCACTCTGGTGGAGCCTCCCTGCAACGACCCTACGGTG
TGCCAGCTCCCTATATCCAAGAAAACCCTGCTCTGCAGCTTCGAAGTCCTGGACGAGCTG
GGAAAACACATGCTGCTGAGGCGGGACTGTGGCCCAGTGGATACCAAGGTTACAGATGAC
ACAAACGAGACTTTCAGTTCATTCCTCCCACTGTTGAACAAGGATCCCCTGCCCCAGGAC
TTTTCTGTGAAGATGGCTTCGATCTTCAAGGAATTTGTCACCACCTATAATCGGACGTAT
GATACAAAGGAGGAAGCCAGGTGGCGCATGTCCGTCTTCGCCAACAACATGGTGCGAGCG
CAGAAGATCCAGGCCCTGGACACTGGCACAGCTCGGTACGGGGTCACCAAGTTCAGTGAC
CTTACAGAGGAGGAGTTCCGCACCATCTACCTGAACCCCCTCCTGCAAGAGGAGCCCGGC
CGGAAGATGCGCCTCGCCAAGTCCGTCTCCAGCCTTCCTCCCCCCGAGTGGGACTGGAGG
AAAAAGGGGGCTGTCACCAAAGTCAAGGACCAGGGCATGTGCGGCTCCTGCTGGGCCTTT
TCCGTCACGGGCAACGTGGAGGGCCAGTGGTTCCTGAAGCAGGGGACGCTGCTCTCGCTC
TCGGAGCAGGAGCTCCTGGACTGCGACAAGGTGGACAAGGGCTGCATGGGCGGCTTGCCC
TCCAACGCCTACTCAGCCATAAAGACTCTGGGAGGGCTGGAGACGGAGGACGACTACAGC
TACCGGGGCCACCTGCAGACCTGCAGCTTCAACGCAGAGAAGGCCAAGGTCTACATCAAC
GACTCGGTGGAGCTGAGCCAGAATGAGCAGAAGCTGGCAGCCTGGCTGGCCGAGAAGGGC
CCCATCTCCGTTGCCATCAACGCCTTTGGCATGCAGTTCTACCGCCACGGGATCTCCCAC
CCCCTGAGGCCCCTCTGCAGCCCTTGGCTCATCGACCACGCTGTGCTGCTCGTGGGCTAC
GGCAACCGTTCTGCCACTCCCTTCTGGGCCATCAAGAACAGCTGGGGCACTGACTGGGGC
GAGGAGGGTTACTACTACTTGTACCGTGGGTCCGGGGCCTGTGGCGTGAACATCATGGCC
AGTTCGGCAGTGGTGAACTGAGGCGCACGACCAGAGCAGCCCCTTCCCCTGCCTGACCTG
CATGACCAGGCCCCTCCCCAGGGGGCACAGCCGACTGAGGGACAGGCACCAGGTACCTCA
GGGTGAGCAAAGGCCACTGGACTAGGGGCCCAGCCCCCCTCCCCGAAGCTCCCCATCTGC
ACCTTTGTTGAACTGTGGTAGCTAGGAGGATCTTGGGGTGAAGGGTGATTGTCTCGGCCA
CTGAAGCCGGGGCGAGAACACTGGGCTGGGGTCAGGAGCAGGTGGGAAGAAAGTACCCTG
GTCCCAAACCCAGCTGTGTCCTCAGCAGGCTCTGCCTTCCTGCCCCAGCTTTTCTCTGCT
GCTATAAATTTTCTGGTCCCCCTGGATTTGGGGACAGTGTTACCTTGCACATCTAGAGAC
TGTTGTAACCAACCTTTTCTAACACAATAAAGAGGTGTCCTGGGCCCCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|3916212|gb|AAC78838.1| |
Protein identifier
|
gi|3916212|gb|AAC78838.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
3-292, gnl|bosTau2|chr29 (36968828-36969117) |
|
3-292, gnl|Hg17|chr11 (66092600-66092320) |
|
3-292, gnl|Mm7|chr19 (4749999-4750293) |
| |
|
724-874, gnl|bosTau2|chr29 (36971429-36971579) |
|
724-874, gnl|Hg17|chr11 (66090218-66090068) |
|
724-874, gnl|Mm7|chr19 (4752989-4753139) |
| |
|
1051-1201, gnl|bosTau2|chr29 (36972736-36972886) |
|
1051-1201, gnl|Hg17|chr11 (66089054-66088905) |
|
1051-1201, gnl|Mm7|chr19 (4754208-4754355) |
| |
|
1385-1909, gnl|bosTau2|chr29 (36973862-36974375) |
|
1385-1909, gnl|canFam2|chr18 (53812808-53812394) |
|
1385-1909, gnl|hg17|chr11 (66087434-66087824) |
|
1385-1909, gnl|Hg17|chr11 (66088056-66087511) |
|
1385-1909, gnl|mm7|chr19 (4755803-4755416) |
|
1385-1909, gnl|Mm7|chr19 (4755195-4755722) |
|
1385-1909, gnl|monDom2|scaffold_107 (2453956-2453575) |
|
1385-1909, gnl|panTro1|chr9 (67336094-67336484) |
|
1385-1909, gnl|rheMac2|chr14 (7894063-7893674) |
|
1385-1909, gnl|rn3|chr1 (207628551-207628166) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-292, gnl|bosTau2|chr29 (36968828-36969117) |
|
3-292, gnl|Hg17|chr11 (66092600-66092320) |
|
3-292, gnl|Mm7|chr19 (4749999-4750293) |
| |
|
724-874, gnl|bosTau2|chr29 (36971429-36971579) |
|
724-874, gnl|Hg17|chr11 (66090218-66090068) |
|
724-874, gnl|Mm7|chr19 (4752989-4753139) |
| |
|
1051-1201, gnl|bosTau2|chr29 (36972736-36972886) |
|
1051-1201, gnl|Hg17|chr11 (66089054-66088905) |
|
1051-1201, gnl|Mm7|chr19 (4754208-4754355) |
| |
|
1385-1909, gnl|bosTau2|chr29 (36973862-36974375) |
|
1385-1909, gnl|canFam2|chr18 (53812808-53812394) |
|
1385-1909, gnl|hg17|chr11 (66087434-66087824) |
|
1385-1909, gnl|Hg17|chr11 (66088056-66087511) |
|
1385-1909, gnl|mm7|chr19 (4755803-4755416) |
|
1385-1909, gnl|Mm7|chr19 (4755195-4755722) |
|
1385-1909, gnl|monDom2|scaffold_107 (2453956-2453575) |
|
1385-1909, gnl|panTro1|chr9 (67336094-67336484) |
|
1385-1909, gnl|rheMac2|chr14 (7894063-7893674) |
|
1385-1909, gnl|rn3|chr1 (207628551-207628166) |
|
cty (0.41632) |
|
cov (0.396458) |
|
elu (0.385356) |
|
cli (0.305623) |
|
pla (0.267344) |
|
ese (0.253004) |
|
ece (0.229305) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
cty (0.41632) |
|
cov (0.396458) |
|
elu (0.385356) |
|
cli (0.305623) |
|
pla (0.267344) |
|
ese (0.253004) |
|
ece (0.229305) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
|
cbl (0.114797) |
|
jca (0.11396) |
