Ss1.1-Utr1-UTR010021G11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGGCCGCGGGCAGACGACTAGCTGAGCTCAACCGGCCTGCAGCATGCGGCCCCTGCT CTGCGCTCTGGCCGGGCTCGCCCTGCTCCGAGCTGCGGGCGCCTACGCCGCCGCTGCTGA ACCCTTCATCCCCTCTGGAGGAGACCCGTCTCGGAGCACAGCATGTGACAGATACATGGC TATCCACAGCCGATTGAACGTCATAGAGGAGACGGTGGAGAAGACGGTGGAGCATCTGGA GGCAGAAGTGAAAGGCCTGCTGGGTCAGCTGGAGGAGCTGGCTTGGAACCTGCCCCCAGG GCCCTTTAGCCCAATCCCCGACCTCCTTGGAGATGGAGACAGCAGCTAAGATTGCTTTTG AGCACCGGAGCCTGAGTTGCCTAGCAGCTGAGAACAGAGCCATGCATTTCTGGCCTGCCT TCCTCAGCTTTGTGCAAAAGGAAAGCTATTCCTTTGTCCCCTGTGTCTGCTGACAATGAC CCTGCAGCCACAGCCCCTACTCCATCTGCTCCCATGCCCCAAGGCTCACACCCCATGCAG GCTCAGACCTGGGAGCCCCAGTTGGTCTGTGCTTCTGTCCTCCTTATTTATAGGGGTGGA GAGGTTGGGGTTGATTCATAAAAAAGAAGTTAGGCACCTGAGGCCTAGAAACACAGCTCT CAACACAGCAGAAGGGCCCTTTGAATAGCTCTGCTACTTAAAATGTGGCCATGGGTGAAC CATGTGGTGTCACCTGGAGAGTTTTTATCAAAAATGCAGAATTTGGGACCCCACCCAGAA CTCTTGAATCATAATCTACATTTTAATGAGAGCCCCAGGGGATCTGTGTGCACATTAAAC TTTTAAAAAATATTTATATTGAGGTAAAATTCACATAACATAAAATTCAAAATTTTAACC ATTTTGAGTGGTACGAATTCAGTGGCTGCACAATGTCACGCAGTTACCACCACTTTCTTT TTCTTTTTTTGGTCTTTTTAGGGCTATACCCATGGCATATGGAGTTTCCAAGGCTAGGGG TCGAATCAGAGCTGTAGCTGCCAGCCTATGCCACAGCTACAGTGATGCAGGATCTGAGCT GCATCTGTGACCTACATCACAGCTCAAGGCAATGCCAGATCCTCAACCCACTGAGCGGGG GCAGAGATTGAACCTGCATCCTCGTGGATGCTAGTCAGATTTGTTTCTGCTGAGCCACAA CGGGAATTCCCATCACTACTTTCTAATTCCAGAAATTTTCATCACCCCATAAAGAAACCC TATACTAATAAGCAGTCACTTCCCCTTCCCCTTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGGCCGCGGGCAGACGACTAGCTGAGCTCAACCGGCCTGCAGCATGCGGCCCCTGCT CTGCGCTCTGGCCGGGCTCGCCCTGCTCCGAGCTGCGGGCGCCTACGCCGCCGCTGCTGA ACCCTTCATCCCCTCTGGAGGAGACCCGTCTCGGAGCACAGCATGTGACAGATACATGGC TATCCACAGCCGATTGAACGTCATAGAGGAGACGGTGGAGAAGACGGTGGAGCATCTGGA GGCAGAAGTGAAAGGCCTGCTGGGTCAGCTGGAGGAGCTGGCTTGGAACCTGCCCCCAGG GCCCTTTAGCCCAATCCCCGACCTCCTTGGAGATGGAGACAGCAGCTAAGATTGCTTTTG AGCACCGGAGCCTGAGTTGCCTAGCAGCTGAGAACAGAGCCATGCATTTCTGGCCTGCCT TCCTCAGCTTTGTGCAAAAGGAAAGCTATTCCTTTGTCCCCTGTGTCTGCTGACAATGAC CCTGCAGCCACAGCCCCTACTCCATCTGCTCCCATGCCCCAAGGCTCACACCCCATGCAG GCTCAGACCTGGGAGCCCCAGTTGGTCTGTGCTTCTGTCCTCCTTATTTATAGGGGTGGA GAGGTTGGGGTTGATTCATAAAAAAGAAGTTAGGCACCTGAGGCCTAGAAACACAGCTCT CAACACAGCAGAAGGGCCCTTTGAATAGCTCTGCTACTTAAAATGTGGCCATGGGTGAAC CATGTGGTGTCACCTGGAGAGTTTTTATCAAAAATGCAGAATTTGGGACCCCACCCAGAA CTCTTGAATCATAATCTACATTTTAATGAGAGCCCCAGGGGATCTGTGTGCACATTAAAC TTTTAAAAAATATTTATATTGAGGTAAAATTCACATAACATAAAATTCAAAATTTTAACC ATTTTGAGTGGTACGAATTCAGTGGCTGCACAATGTCACGCAGTTACCACCACTTTCTTT TTCTTTTTTTGGTCTTTTTAGGGCTATACCCATGGCATATGGAGTTTCCAAGGCTAGGGG TCGAATCAGAGCTGTAGCTGCCAGCCTATGCCACAGCTACAGTGATGCAGGATCTGAGCT GCATCTGTGACCTACATCACAGCTCAAGGCAATGCCAGATCCTCAACCCACTGAGCGGGG GCAGAGATTGAACCTGCATCCTCGTGGATGCTAGTCAGATTTGTTTCTGCTGAGCCACAA CGGGAATTCCCATCACTACTTTCTAATTCCAGAAATTTTCATCACCCCATAAAGAAACCC TATACTAATAAGCAGTCACTTCCCCTTCCCCTTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 505-781, - strand, RNAz p=0.994975 | |
| 834-953, + strand, RNAz p=0.65665 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 505-781, - strand, RNAz p=0.994975 | |
| 834-953, + strand, RNAz p=0.65665 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-110, gnl|bosTau2|chr28 (27764387-27764496) | |
| 1-110, gnl|canFam2|chr4 (32498999-32499185) | |
| 1-110, gnl|echTel1|scaffold_43608 (72-354) | |
| 1-110, gnl|Hg17|chr10 (81882452-81882562) | |
| 1-110, gnl|hg17|chr2 (130407801-130408085) | |
| 1-110, gnl|mm7|chr14 (23574576-23574792) | |
| 1-110, gnl|oryCun1|scaffold_179458 (38499-38738) | |
| 1-110, gnl|panTro1|chr13 (16566754-16567038) | |
| 1-110, gnl|rheMac2|chr13 (136393076-136393376) | |
| 1-110, gnl|rn3|chr16 (1512398-1512606) | |
| 210-339, gnl|bosTau2|chr28 (27775204-27775333) | |
| 210-339, gnl|echTel1|scaffold_185692 (1052-800) | |
| 210-339, gnl|echTel1|scaffold_185692 (536-1089) | |
| 210-339, gnl|hg17|chr10 (81893669-81894191) | |
| 210-339, gnl|Hg17|chr10 (81893957-81894078) | |
| 210-339, gnl|hg17|chr2 (130397288-130397534) | |
| 210-339, gnl|loxAfr1|scaffold_27187 (12027-12278) | |
| 210-339, gnl|loxAfr1|scaffold_27187 (12554-11990) | |
| 210-339, gnl|mm7|chr14 (23560689-23560941) | |
| 210-339, gnl|mm7|chr14 (23561161-23560691) | |
| 210-339, gnl|Mm7|chr14 (23560888-23560765) | |
| 210-339, gnl|oryCun1|scaffold_204591 (48992-49248) | |
| 210-339, gnl|oryCun1|scaffold_204591 (49447-48976) | |
| 210-339, gnl|panTro1|chr8 (83263491-83263245) | |
| 210-339, gnl|panTro1|chr8 (83263003-83263491) | |
| 210-339, gnl|rheMac2|chr13 (136381535-136381761) | |
| 210-339, gnl|rheMac2|chr9 (57256267-57255746) | |
| 210-339, gnl|rn3|chr16 (1498067-1498303) | |
| 210-339, gnl|rn3|chr16 (1498500-1498068) | |
| 390-953, gnl|bosTau2|chr28 (27775766-27776304) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-110, gnl|bosTau2|chr28 (27764387-27764496) | |
| 1-110, gnl|canFam2|chr4 (32498999-32499185) | |
| 1-110, gnl|echTel1|scaffold_43608 (72-354) | |
| 1-110, gnl|Hg17|chr10 (81882452-81882562) | |
| 1-110, gnl|hg17|chr2 (130407801-130408085) | |
| 1-110, gnl|mm7|chr14 (23574576-23574792) | |
| 1-110, gnl|oryCun1|scaffold_179458 (38499-38738) | |
| 1-110, gnl|panTro1|chr13 (16566754-16567038) | |
| 1-110, gnl|rheMac2|chr13 (136393076-136393376) | |
| 1-110, gnl|rn3|chr16 (1512398-1512606) | |
| 210-339, gnl|bosTau2|chr28 (27775204-27775333) | |
| 210-339, gnl|echTel1|scaffold_185692 (1052-800) | |
| 210-339, gnl|echTel1|scaffold_185692 (536-1089) | |
| 210-339, gnl|hg17|chr10 (81893669-81894191) | |
| 210-339, gnl|Hg17|chr10 (81893957-81894078) | |
| 210-339, gnl|hg17|chr2 (130397288-130397534) | |
| 210-339, gnl|loxAfr1|scaffold_27187 (12027-12278) | |
| 210-339, gnl|loxAfr1|scaffold_27187 (12554-11990) | |
| 210-339, gnl|mm7|chr14 (23560689-23560941) | |
| 210-339, gnl|mm7|chr14 (23561161-23560691) | |
| 210-339, gnl|Mm7|chr14 (23560888-23560765) | |
| 210-339, gnl|oryCun1|scaffold_204591 (48992-49248) | |
| 210-339, gnl|oryCun1|scaffold_204591 (49447-48976) | |
| 210-339, gnl|panTro1|chr8 (83263491-83263245) | |
| 210-339, gnl|panTro1|chr8 (83263003-83263491) | |
| 210-339, gnl|rheMac2|chr13 (136381535-136381761) | |
| 210-339, gnl|rheMac2|chr9 (57256267-57255746) | |
| 210-339, gnl|rn3|chr16 (1498067-1498303) | |
| 210-339, gnl|rn3|chr16 (1498500-1498068) | |
| 390-953, gnl|bosTau2|chr28 (27775766-27776304) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cov (0.528611) | |
| eru (0.240096) | |
| jca (0.22792) | |
| nep (0.183925) | |
| gul (0.177588) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) | |
| spc (0.113366) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| eru (0.240096) | |
| jca (0.22792) | |
| nep (0.183925) | |
| gul (0.177588) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) | |
| spc (0.113366) |