Non-Coding RNA Search

Ss1.1-Utr1-UTR010022E09.5

Sequence:


               
               TTGTGTGGCTGGACTCGGCCGCCACTGCGGTGTGAGGCGCGTGTCCGGGCTTTTGCCGTC
CCCGCACCCGCACCGCGGCTTCTGCCTTGCGGTTCGTCGTTCGACAGCCAGCCCTCGGGC
CCCTCGCCCGCCACGGACATGCCGCGCGTCTACATAGGACGCCTGAGCTACAACGTCCGG
GAGAAGGACATCCAGCGCTTTTTCAGCGGCTATGGCCGCCTTCTCGAAATTGACCTTAAA
AATGGGTACGGCTTCGTGGAGTTCGAGGACTCCCGCGACGCCGACGACGCCGTTTACGAG
CTGAACGGCAAGGAGCTCTGCGGCGAGCGCGTGATCGTGGAGCACGCCCGGGGCCCGCGC
CGCGATCGCGACGGCTACAGCTACGGAAGCCGCAGTGGTGGAGGTGGATACAGCAGTCGG
AGAACCTCTGGCAGAGACAAATACGGACCACCTGTACGCACAGAATTCAGGCTTATTGTA
GAAAATCTTTCTAGTCGTTGCAGTTGGCAGGATTTAAAGGATTTCATGAGGCAAGCAGGT
GAAGTAACCTATGCGGATGCTCACAAAGAACGCACAAACGAAGGCGTCATTGAGTTTCGC
TCCTACTCTGACATGAAGCGTGCTTTAGATAAGCTGGATGGTACAGAAATCAATGGGAGA
AATATCAGACTCATTGAAGATAAACCGCGAACAAGCCATAGGCGGTCTTACTCTGGAAGC
AGATCAAGGTCACGATCTAGAAGAAGGTCACGAAGTAGGAGTCGTAGGAGTAGCCGCAGT
AGATCTCGAAGTATCTCGAAAAGTCGCTCCCGATCCAGGTCTCGGAGCAAAGGTCGATCA
CGTTCCCGTTCAAAGGGCAGAAAATCTAGATCAAAAAGCAAGTCTAAGGCCAAGTCTGAT
CGGGGATCCCGTTCACGCTCTCGAAGCAGATCAAAGGATGAGTATGAGAAATCTCGAAGC
AGGTCTCGTTCTCGATCTCGTTCCCCCAAAGAAAATGGAAAAGGTGATGTAAAGTCAAAA
TCTAGATCAAGGAGCCAGTCTCGTTCCCATTCACCCCTACCTGCTCCACCCTCAAAGGCC
CGTTCTGTGTCTCCTCCACCAAAAAGAGCTTCAAGATCCCGTTCTCGATCTCGTTCAAAG
TCAAGGTCACGATCCAGATCGAGTTCCAGGGATTAACCCAGAACTTTTGGTTCTTTGCAC
ACTATAACGGAACACTTTTCCTACTTGCTTAGGCAGTTACTCTTCCATGTTTATATTTGG
CCTCTTCTGCGAGTGGAATCTCCTGAAAAGAGGGGCACACAAAAATTTGATTTGTGGCCA
AATTCGATGAAAAAGATGAGGTTCTAAAGAAATGCCATGAAGTCAAAGATCCTCTCCCTT
CTTTGTAGAATTAAGATAACTTTTGATTTTATAGCTTTTGAGCTAAAACAACTTTTGTAA
AGATTAAGCTCATTTAGATTTTTTTTTTTTTTTTTTAAGTATTTCAGCAGGATCTGCTGC
AGGGGTTTTGTTGTCGTTATATTTGTTTGCTTTTAAATTAACCGTTTCAAGCTTTGAATA
CTTAAGGCTTTAGAGGGAGAACCCAATTTTTAATTATGTTGGCTTTTTATAAAGCTTGAG
TTATGTAAGATTTCAATAAAAATTGCTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGTGGCTGGACTCGGCCGCCACTGCGGTGTGAGGCGCGTGTCCGGGCTTTTGCCGTC
CCCGCACCCGCACCGCGGCTTCTGCCTTGCGGTTCGTCGTTCGACAGCCAGCCCTCGGGC
CCCTCGCCCGCCACGGACATGCCGCGCGTCTACATAGGACGCCTGAGCTACAACGTCCGG
GAGAAGGACATCCAGCGCTTTTTCAGCGGCTATGGCCGCCTTCTCGAAATTGACCTTAAA
AATGGGTACGGCTTCGTGGAGTTCGAGGACTCCCGCGACGCCGACGACGCCGTTTACGAG
CTGAACGGCAAGGAGCTCTGCGGCGAGCGCGTGATCGTGGAGCACGCCCGGGGCCCGCGC
CGCGATCGCGACGGCTACAGCTACGGAAGCCGCAGTGGTGGAGGTGGATACAGCAGTCGG
AGAACCTCTGGCAGAGACAAATACGGACCACCTGTACGCACAGAATTCAGGCTTATTGTA
GAAAATCTTTCTAGTCGTTGCAGTTGGCAGGATTTAAAGGATTTCATGAGGCAAGCAGGT
GAAGTAACCTATGCGGATGCTCACAAAGAACGCACAAACGAAGGCGTCATTGAGTTTCGC
TCCTACTCTGACATGAAGCGTGCTTTAGATAAGCTGGATGGTACAGAAATCAATGGGAGA
AATATCAGACTCATTGAAGATAAACCGCGAACAAGCCATAGGCGGTCTTACTCTGGAAGC
AGATCAAGGTCACGATCTAGAAGAAGGTCACGAAGTAGGAGTCGTAGGAGTAGCCGCAGT
AGATCTCGAAGTATCTCGAAAAGTCGCTCCCGATCCAGGTCTCGGAGCAAAGGTCGATCA
CGTTCCCGTTCAAAGGGCAGAAAATCTAGATCAAAAAGCAAGTCTAAGGCCAAGTCTGAT
CGGGGATCCCGTTCACGCTCTCGAAGCAGATCAAAGGATGAGTATGAGAAATCTCGAAGC
AGGTCTCGTTCTCGATCTCGTTCCCCCAAAGAAAATGGAAAAGGTGATGTAAAGTCAAAA
TCTAGATCAAGGAGCCAGTCTCGTTCCCATTCACCCCTACCTGCTCCACCCTCAAAGGCC
CGTTCTGTGTCTCCTCCACCAAAAAGAGCTTCAAGATCCCGTTCTCGATCTCGTTCAAAG
TCAAGGTCACGATCCAGATCGAGTTCCAGGGATTAACCCAGAACTTTTGGTTCTTTGCAC
ACTATAACGGAACACTTTTCCTACTTGCTTAGGCAGTTACTCTTCCATGTTTATATTTGG
CCTCTTCTGCGAGTGGAATCTCCTGAAAAGAGGGGCACACAAAAATTTGATTTGTGGCCA
AATTCGATGAAAAAGATGAGGTTCTAAAGAAATGCCATGAAGTCAAAGATCCTCTCCCTT
CTTTGTAGAATTAAGATAACTTTTGATTTTATAGCTTTTGAGCTAAAACAACTTTTGTAA
AGATTAAGCTCATTTAGATTTTTTTTTTTTTTTTTTAAGTATTTCAGCAGGATCTGCTGC
AGGGGTTTTGTTGTCGTTATATTTGTTTGCTTTTAAATTAACCGTTTCAAGCTTTGAATA
CTTAAGGCTTTAGAGGGAGAACCCAATTTTTAATTATGTTGGCTTTTTATAAAGCTTGAG
TTATGTAAGATTTCAATAAAAATTGCTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SFRS6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               SFRS6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               625-743, + strand, RNAz p=0.612201

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               625-743, + strand, RNAz p=0.612201

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of U30828, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of U30828, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-247, gnl|bosTau2|chr13 (52824286-52824040)
               

               
               1-247, gnl|Hg17|chr20 (41519951-41520196)
               

               
               1-247, gnl|Mm7|chr2 (162672422-162672669)
               


               
               518-743, gnl|bosTau2|chr13 (52822098-52821874)
               

               
               518-743, gnl|Hg17|chr20 (41522085-41522309)
               

               
               518-743, gnl|Mm7|chr2 (162674542-162674760)
               


               
               1566-1670, gnl|bosTau2|chr10 (1012872-1012977)
               

               
               1566-1670, gnl|Hg17|chr20 (41523518-41523606)
               

               
               1566-1670, gnl|Mm7|chr2 (162676012-162676102)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-247, gnl|bosTau2|chr13 (52824286-52824040)
               

               
               1-247, gnl|Hg17|chr20 (41519951-41520196)
               

               
               1-247, gnl|Mm7|chr2 (162672422-162672669)
               


               
               518-743, gnl|bosTau2|chr13 (52822098-52821874)
               

               
               518-743, gnl|Hg17|chr20 (41522085-41522309)
               

               
               518-743, gnl|Mm7|chr2 (162674542-162674760)
               


               
               1566-1670, gnl|bosTau2|chr10 (1012872-1012977)
               

               
               1566-1670, gnl|Hg17|chr20 (41523518-41523606)
               

               
               1566-1670, gnl|Mm7|chr2 (162676012-162676102)

Expressed library(ies): 43 entry(ies)

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Expressed library(ies): 43 entry(ies)

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               spl (0.715922)
               

               
               kid (0.648677)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               bla (0.497389)
               

               
               mgp (0.461361)
               

               
               cag (0.453583)
               

               
               hea (0.408998)
               

               
               jej (0.395687)
               

               
               ova (0.387397)
               

               
               thg (0.380373)
               

               
               ton (0.351)
               

               
               cbl (0.344392)
               

               
               eye (0.341006)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.715922)
               

               
               kid (0.648677)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               bla (0.497389)
               

               
               mgp (0.461361)
               

               
               cag (0.453583)
               

               
               hea (0.408998)
               

               
               jej (0.395687)
               

               
               ova (0.387397)
               

               
               thg (0.380373)
               

               
               ton (0.351)
               

               
               cbl (0.344392)
               

               
               eye (0.341006)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-247, gnl\|bosTau2\|chr13 (52824286-52824040)
	1-247, gnl\|Hg17\|chr20 (41519951-41520196)
	1-247, gnl\|Mm7\|chr2 (162672422-162672669)

	518-743, gnl\|bosTau2\|chr13 (52822098-52821874)
	518-743, gnl\|Hg17\|chr20 (41522085-41522309)
	518-743, gnl\|Mm7\|chr2 (162674542-162674760)

	1566-1670, gnl\|bosTau2\|chr10 (1012872-1012977)
	1566-1670, gnl\|Hg17\|chr20 (41523518-41523606)
	1566-1670, gnl\|Mm7\|chr2 (162676012-162676102)

	spl (0.715922)
	kid (0.648677)
	pro (0.512033)
	sug (0.509165)
	bla (0.497389)
	mgp (0.461361)
	cag (0.453583)
	hea (0.408998)
	jej (0.395687)
	ova (0.387397)
	thg (0.380373)
	ton (0.351)
	cbl (0.344392)
	eye (0.341006)
	lun (0.300978)
	ski (0.29347)
	pty (0.285429)
	csk (0.281492)
	eep (0.245128)
	ebs (0.236602)
	ece (0.229305)
	spc (0.226732)
	cty (0.20816)
	tes (0.207814)
	fcc (0.197785)
	eje (0.197668)
	cmu (0.186393)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	nje (0.16592)
	cki (0.165235)
	tbr (0.154178)
	cli (0.152812)
	isp (0.150376)
	liv (0.146284)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	lyg (0.133103)
	med (0.116252)
	ecc (0.115035)