Ss1.1-Utr1-UTR010022G04.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCACCCCCCGCGCAGCCTTGTTCTGGCGTGAGAGCCGGAGGCAGTCCTTCCCCGCTCA GCTTTGTGGTGTTTGTGATCCTTATCCTTTAAGATGCCTGAGGAAGTGCACCATGGCGAG GAGGAAGTGGAGACTTTTGCCTTCCAGGCAGAAATCGCCCAGCTCATGTCTCTCATCATC AATACCTTTTATTCCAACAAGGAGATTTTTCTTCGGGAGTTGATCAGTAATGCTTCTGAT GCCTTGGACAAGATTCGCTATGAGAGCCTGACAGACCCTTCCAAATTGGACAGTGGTAAA GAGCTGAAAATTGACATCATCCCCAACCCCCAGGAGCGCACCCTGACTCTGGTAGACACA GGCATTGGCATGACCAAAGCTGATCTCATAAATAATTTGGGAACCATTGCCAAGTCTGGT ACTAAAGCATTTATGGAGGCTCTTCAGGCTGGTGCAGACATCTCCATGATTGGACAGTTT GGTGTTGGCTTCTATTCTGCCTACCTGGTGGCAGAGAAAGTGGTTGTGATCACAAAGCAC AATGATGATGAACAGTATGCCTGGGAGTCTTCTGCTGGGGGCTCCTTCACAGTTCGTGCT GACCATGGTGAGCCCATTGGCCGAGGTACCAAGGTCATTCTGCATCTTAAGGAGGACCAG ACAGAATACTTAGAAGAGAGACGGGTGAAAGAGGTGGTAAAGAAGCACTCACAGTTCATA GGTTATCCCATCACACTTTATCTGGAGAAGGAACGTGAGAAAGAAATCAGTGATGATGAG GCAGAGGAAGAGAAAGGTGATAAAGAGGAGGAAGATAAAGATGATGAGGAGAAGCCCAAG ATTGAAGATGTGGGCTCAGATGAGGAGGATGATAGTGGCAAAGATAAGAAAAAGAAGACA AAAAAGATCAAGGAGAAGTATATTGATCAGGAAGAACTGAACAAGACCAAGCCCATCTGG ACCAGGAACCCTGATGACATCACCCAGGAGGAATATGGAGAGTTCTACAAAAGCCTGACC AATGACTGGGAAGATCACCTGGCAGTCAAGCACTTCTCTGTAGAAGGTCAGTTGGAATTC AGAGCATTGCTGTTCATCCCCCGTCGGGCTCCTTTTGACCTCTTTGAGAACAAAAAGAAA AAGAACAACATCAAACTTTACGTTCGCCGTGTGTTCATCATGGACAGCTGCGATGAGCTG ATACCAGAGTACCTCAACTTCATCCGCGGTGTGGTTGACTCTGAAGACCTTCCCCTGAAC ATCTCCCGAGAAATGCTCCAGCAGAGCAAGATTTTGAAGGTCATTCGTAAAAACATTGTT AAGAAGTGCCTGGAGCTCTTCTCTGAGCTGGCAGAAGACAAGGAGAACTACAAGAAATTC TACGAGGCTTTCTCAAAAAATCTAAAGCTTGGAATCCATGAGGACTCCACTAATCGGCGG CGCCTTTCTGAGCTGCTGCGCTACCATACCTCCCAGTCTGGCGATGAGATGACTTCTCTC TCAGAGTACGTCTCACGCATGAAGGAGACCCAGAAGTCCATCTACTATATCACTGGTGAG AGCAAGGAGCAGGTTGCCAACTCTGCGTTTGTGGAGCGTGTGCGGAAGCGGGGTTTCGAG GTGGTGTACATGACAGAGCCCATCGACGAGTACTGTGTGCAACAGCTCAAGGAGTTTGAT GGGAAGAGCCTGGTCTCAGTTACCAAGGAGGGCCTGGAGCTGCCTGAGGATGAGGAGGAG AAGAAAAAGATGGAGGAGAGCAAGGCCAAGTTTGAGAACCTCTGCAAACTCATGAAAGAG ATCTTGGATAAGAAAGTAGAGAAGGTGACCATCTCCAACAGGCTTGTGTCTTCACCCTGT TGCATTGTGACCAGCACCTATGGCTGGACAGCCAACATGGAGCGCATCATGAAAGCTCAG GCACTTCGGGACAACTCGACCATGGGCTACATGATGGCCAAAAAGCACCTGGAGATCAAC CCTGACCACCCCATTGTGGAGACGCTGCGACAGAAGGCAGAGGCGGACAAGAATGACAAG GCTGTCAAGGACCTAGTGGTGCTGCTGTTTGAAACGGCACTGCTGTCTTCTGGCTTCTCG CTGGAAGATCCCCAGACCCATTCCAACCGCATCTACCGCATGATCAAGCTTGGCCTGGGC ATTGATGAGGACGAAGTGACAGCAGAGGAGCCCAGTGCTGCTGTTCCTGATGAGATCCCC CCGCTCGAGGGTGATGAGGATGCATCTCGCATGGAAGAAGTAGATTAGGAGTTGCTACCT GCAAACTTTGTTCCCTCTGTATAGTGTCCCCATTGGCTCCCCTGGCAGCAGCCCCCAGTG GCCCTAGCCCACCTGGTCTCCTCTGCTGATGTCTAGTGGTTTTATTTGTTTTTCTGTCTA AGGCAGGCTACAGGGGCCGCAAGCCCTAATAACCCTTCCCACATTTGACACTGGGTTTGG GTGTCGTGTACTGTGCTCGTTTATTTTGTTCTGAGATTAAAGTATGCAAAATAAAGAAGA TGCAGTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCACCCCCCGCGCAGCCTTGTTCTGGCGTGAGAGCCGGAGGCAGTCCTTCCCCGCTCA GCTTTGTGGTGTTTGTGATCCTTATCCTTTAAGATGCCTGAGGAAGTGCACCATGGCGAG GAGGAAGTGGAGACTTTTGCCTTCCAGGCAGAAATCGCCCAGCTCATGTCTCTCATCATC AATACCTTTTATTCCAACAAGGAGATTTTTCTTCGGGAGTTGATCAGTAATGCTTCTGAT GCCTTGGACAAGATTCGCTATGAGAGCCTGACAGACCCTTCCAAATTGGACAGTGGTAAA GAGCTGAAAATTGACATCATCCCCAACCCCCAGGAGCGCACCCTGACTCTGGTAGACACA GGCATTGGCATGACCAAAGCTGATCTCATAAATAATTTGGGAACCATTGCCAAGTCTGGT ACTAAAGCATTTATGGAGGCTCTTCAGGCTGGTGCAGACATCTCCATGATTGGACAGTTT GGTGTTGGCTTCTATTCTGCCTACCTGGTGGCAGAGAAAGTGGTTGTGATCACAAAGCAC AATGATGATGAACAGTATGCCTGGGAGTCTTCTGCTGGGGGCTCCTTCACAGTTCGTGCT GACCATGGTGAGCCCATTGGCCGAGGTACCAAGGTCATTCTGCATCTTAAGGAGGACCAG ACAGAATACTTAGAAGAGAGACGGGTGAAAGAGGTGGTAAAGAAGCACTCACAGTTCATA GGTTATCCCATCACACTTTATCTGGAGAAGGAACGTGAGAAAGAAATCAGTGATGATGAG GCAGAGGAAGAGAAAGGTGATAAAGAGGAGGAAGATAAAGATGATGAGGAGAAGCCCAAG ATTGAAGATGTGGGCTCAGATGAGGAGGATGATAGTGGCAAAGATAAGAAAAAGAAGACA AAAAAGATCAAGGAGAAGTATATTGATCAGGAAGAACTGAACAAGACCAAGCCCATCTGG ACCAGGAACCCTGATGACATCACCCAGGAGGAATATGGAGAGTTCTACAAAAGCCTGACC AATGACTGGGAAGATCACCTGGCAGTCAAGCACTTCTCTGTAGAAGGTCAGTTGGAATTC AGAGCATTGCTGTTCATCCCCCGTCGGGCTCCTTTTGACCTCTTTGAGAACAAAAAGAAA AAGAACAACATCAAACTTTACGTTCGCCGTGTGTTCATCATGGACAGCTGCGATGAGCTG ATACCAGAGTACCTCAACTTCATCCGCGGTGTGGTTGACTCTGAAGACCTTCCCCTGAAC ATCTCCCGAGAAATGCTCCAGCAGAGCAAGATTTTGAAGGTCATTCGTAAAAACATTGTT AAGAAGTGCCTGGAGCTCTTCTCTGAGCTGGCAGAAGACAAGGAGAACTACAAGAAATTC TACGAGGCTTTCTCAAAAAATCTAAAGCTTGGAATCCATGAGGACTCCACTAATCGGCGG CGCCTTTCTGAGCTGCTGCGCTACCATACCTCCCAGTCTGGCGATGAGATGACTTCTCTC TCAGAGTACGTCTCACGCATGAAGGAGACCCAGAAGTCCATCTACTATATCACTGGTGAG AGCAAGGAGCAGGTTGCCAACTCTGCGTTTGTGGAGCGTGTGCGGAAGCGGGGTTTCGAG GTGGTGTACATGACAGAGCCCATCGACGAGTACTGTGTGCAACAGCTCAAGGAGTTTGAT GGGAAGAGCCTGGTCTCAGTTACCAAGGAGGGCCTGGAGCTGCCTGAGGATGAGGAGGAG AAGAAAAAGATGGAGGAGAGCAAGGCCAAGTTTGAGAACCTCTGCAAACTCATGAAAGAG ATCTTGGATAAGAAAGTAGAGAAGGTGACCATCTCCAACAGGCTTGTGTCTTCACCCTGT TGCATTGTGACCAGCACCTATGGCTGGACAGCCAACATGGAGCGCATCATGAAAGCTCAG GCACTTCGGGACAACTCGACCATGGGCTACATGATGGCCAAAAAGCACCTGGAGATCAAC CCTGACCACCCCATTGTGGAGACGCTGCGACAGAAGGCAGAGGCGGACAAGAATGACAAG GCTGTCAAGGACCTAGTGGTGCTGCTGTTTGAAACGGCACTGCTGTCTTCTGGCTTCTCG CTGGAAGATCCCCAGACCCATTCCAACCGCATCTACCGCATGATCAAGCTTGGCCTGGGC ATTGATGAGGACGAAGTGACAGCAGAGGAGCCCAGTGCTGCTGTTCCTGATGAGATCCCC CCGCTCGAGGGTGATGAGGATGCATCTCGCATGGAAGAAGTAGATTAGGAGTTGCTACCT GCAAACTTTGTTCCCTCTGTATAGTGTCCCCATTGGCTCCCCTGGCAGCAGCCCCCAGTG GCCCTAGCCCACCTGGTCTCCTCTGCTGATGTCTAGTGGTTTTATTTGTTTTTCTGTCTA AGGCAGGCTACAGGGGCCGCAAGCCCTAATAACCCTTCCCACATTTGACACTGGGTTTGG GTGTCGTGTACTGTGCTCGTTTATTTTGTTCTGAGATTAAAGTATGCAAAATAAAGAAGA TGCAGTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1635-1754, + strand, RNAz p=0.624154 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1635-1754, + strand, RNAz p=0.624154 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 118-224, gnl|bosTau2|chr21 (46565467-46565361) | |
| 118-224, gnl|canFam2|chr23 (5743643-5743457) | |
| 118-224, gnl|danRer3|chr20 (55715735-55715924) | |
| 118-224, gnl|dasNov1|scaffold_31442 (736-578) | |
| 118-224, gnl|echTel1|scaffold_275962 (14555-14402) | |
| 118-224, gnl|fr1|chrUn (85014922-85015089) | |
| 118-224, gnl|galGal2|chr5 (46297541-46297732) | |
| 118-224, gnl|hg17|chr14 (101622291-101622491) | |
| 118-224, gnl|Hg17|chr14 (101622429-101622323) | |
| 118-224, gnl|loxAfr1|scaffold_65546 (3966-3800) | |
| 118-224, gnl|mm7|chr12 (108213779-108213962) | |
| 118-224, gnl|Mm7|chr12 (108213901-108213795) | |
| 118-224, gnl|monDom2|scaffold_6 (85301913-85302096) | |
| 118-224, gnl|oryCun1|scaffold_133999 (13317-13464) | |
| 118-224, gnl|panTro1|chr15 (102231945-102232129) | |
| 118-224, gnl|rheMac2|chr7 (165375016-165375200) | |
| 118-224, gnl|rn3|chr6 (135424532-135424714) | |
| 118-224, gnl|tetNig1|chr14 (6875263-6875436) | |
| 118-224, gnl|xenTro1|scaffold_178 (1729797-1729974) | |
| 241-603, gnl|bosTau2|chr21 (46565255-46564893) | |
| 241-603, gnl|Hg17|chr14 (101622214-101621852) | |
| 241-603, gnl|Mm7|chr12 (108213678-108213316) | |
| 743-1050, gnl|bosTau2|chr21 (46564158-46563839) | |
| 743-1050, gnl|Hg17|chr14 (101621087-101620771) | |
| 743-1050, gnl|Mm7|chr12 (108212602-108212283) | |
| 1219-1412, gnl|bosTau2|chr21 (46563323-46563130) | |
| 1219-1412, gnl|Hg17|chr14 (101620071-101619878) | |
| 1219-1412, gnl|Mm7|chr12 (108211760-108211567) | |
| 1555-1827, gnl|bosTau2|chr21 (46562717-46562445) | |
| 1555-1827, gnl|Hg17|chr14 (101619393-101619121) | |
| 1555-1827, gnl|Mm7|chr12 (108211133-108210861) | |
| 2102-2536, gnl|bosTau2|chr11 (9705872-9705444) | |
| 2102-2536, gnl|Hg17|chr4 (89172187-89172615) | |
| 2102-2536, gnl|Mm7|chrX (136646479-136646915) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 118-224, gnl|bosTau2|chr21 (46565467-46565361) | |
| 118-224, gnl|canFam2|chr23 (5743643-5743457) | |
| 118-224, gnl|danRer3|chr20 (55715735-55715924) | |
| 118-224, gnl|dasNov1|scaffold_31442 (736-578) | |
| 118-224, gnl|echTel1|scaffold_275962 (14555-14402) | |
| 118-224, gnl|fr1|chrUn (85014922-85015089) | |
| 118-224, gnl|galGal2|chr5 (46297541-46297732) | |
| 118-224, gnl|hg17|chr14 (101622291-101622491) | |
| 118-224, gnl|Hg17|chr14 (101622429-101622323) | |
| 118-224, gnl|loxAfr1|scaffold_65546 (3966-3800) | |
| 118-224, gnl|mm7|chr12 (108213779-108213962) | |
| 118-224, gnl|Mm7|chr12 (108213901-108213795) | |
| 118-224, gnl|monDom2|scaffold_6 (85301913-85302096) | |
| 118-224, gnl|oryCun1|scaffold_133999 (13317-13464) | |
| 118-224, gnl|panTro1|chr15 (102231945-102232129) | |
| 118-224, gnl|rheMac2|chr7 (165375016-165375200) | |
| 118-224, gnl|rn3|chr6 (135424532-135424714) | |
| 118-224, gnl|tetNig1|chr14 (6875263-6875436) | |
| 118-224, gnl|xenTro1|scaffold_178 (1729797-1729974) | |
| 241-603, gnl|bosTau2|chr21 (46565255-46564893) | |
| 241-603, gnl|Hg17|chr14 (101622214-101621852) | |
| 241-603, gnl|Mm7|chr12 (108213678-108213316) | |
| 743-1050, gnl|bosTau2|chr21 (46564158-46563839) | |
| 743-1050, gnl|Hg17|chr14 (101621087-101620771) | |
| 743-1050, gnl|Mm7|chr12 (108212602-108212283) | |
| 1219-1412, gnl|bosTau2|chr21 (46563323-46563130) | |
| 1219-1412, gnl|Hg17|chr14 (101620071-101619878) | |
| 1219-1412, gnl|Mm7|chr12 (108211760-108211567) | |
| 1555-1827, gnl|bosTau2|chr21 (46562717-46562445) | |
| 1555-1827, gnl|Hg17|chr14 (101619393-101619121) | |
| 1555-1827, gnl|Mm7|chr12 (108211133-108210861) | |
| 2102-2536, gnl|bosTau2|chr11 (9705872-9705444) | |
| 2102-2536, gnl|Hg17|chr4 (89172187-89172615) | |
| 2102-2536, gnl|Mm7|chrX (136646479-136646915) |
| Expressed library(ies): 69 entry(ies) | More info |
| Expressed library(ies): 69 entry(ies) | Help | Less info |
| ecc (2.07063) | |
| fcc (1.97785) | |
| clu (1.67504) | |
| elu (1.54143) | |
| hyp (1.42837) | |
| ece (1.37583) | |
| fhi (1.35662) | |
| nca (1.23186) | |
| ebs (1.18301) | |
| med (1.16252) | |
| fce (1.08637) | |
| pro (1.02407) | |
| mcp (1.02389) | |
| eye (1.02302) | |
| cut (1.01954) | |
| ese (1.01202) | |
| eep (0.980512) | |
| nco (0.970403) | |
| sme (0.91631) | |
| nbm (0.893921) | |
| eje (0.889504) | |
| fbs (0.876732) | |
| cst (0.840218) | |
| col (0.780031) | |
| cty (0.72856) | |
| cly (0.723851) | |
| lnt (0.711541) | |
| pgl (0.7109) | |
| ssp (0.677599) | |
| cki (0.660939) | |
| csp (0.644745) | |
| fli (0.608643) | |
| spl (0.572738) | |
| nep (0.551775) | |
| cov (0.528611) | |
| fty (0.527519) | |
| ill (0.526778) | |
| ton (0.526501) | |
| sin (0.524843) | |
| nje (0.49776) | |
| bla (0.497389) | |
| ldo (0.485013) | |
| cag (0.453583) | |
| nms (0.427716) | |
| che (0.408942) | |
| pla (0.401016) | |
| ova (0.387397) | |
| nlu (0.383362) | |
| eru (0.360144) | |
| cje (0.330469) | |
| cli (0.305623) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| sug (0.254582) | |
| jca (0.22792) | |
| spc (0.226732) | |
| mas (0.210305) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cbl (0.114797) | |
| jej (0.0989218) |
| Expressed library(ies): 69 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (2.07063) | |
| fcc (1.97785) | |
| clu (1.67504) | |
| elu (1.54143) | |
| hyp (1.42837) | |
| ece (1.37583) | |
| fhi (1.35662) | |
| nca (1.23186) | |
| ebs (1.18301) | |
| med (1.16252) | |
| fce (1.08637) | |
| pro (1.02407) | |
| mcp (1.02389) | |
| eye (1.02302) | |
| cut (1.01954) | |
| ese (1.01202) | |
| eep (0.980512) | |
| nco (0.970403) | |
| sme (0.91631) | |
| nbm (0.893921) | |
| eje (0.889504) | |
| fbs (0.876732) | |
| cst (0.840218) | |
| col (0.780031) | |
| cty (0.72856) | |
| cly (0.723851) | |
| lnt (0.711541) | |
| pgl (0.7109) | |
| ssp (0.677599) | |
| cki (0.660939) | |
| csp (0.644745) | |
| fli (0.608643) | |
| spl (0.572738) | |
| nep (0.551775) | |
| cov (0.528611) | |
| fty (0.527519) | |
| ill (0.526778) | |
| ton (0.526501) | |
| sin (0.524843) | |
| nje (0.49776) | |
| bla (0.497389) | |
| ldo (0.485013) | |
| cag (0.453583) | |
| nms (0.427716) | |
| che (0.408942) | |
| pla (0.401016) | |
| ova (0.387397) | |
| nlu (0.383362) | |
| eru (0.360144) | |
| cje (0.330469) | |
| cli (0.305623) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| sug (0.254582) | |
| jca (0.22792) | |
| spc (0.226732) | |
| mas (0.210305) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cbl (0.114797) | |
| jej (0.0989218) |